Clone Sequence Records
BO07875.3prime Sequence
923 bp (810 high quality bases) assembled on 2006-01-06
> BO07875.3prime
ATGGTCTAGAAAGCTTGCGTGCTCCCTTGAGGCATTCAGCTCGGCGATCT
CATCCTGACGCAGTGCCTCCGACGGCGAAAGTCCGATCCTTCCGCCCAAG
GGTATTATGTCGATGTTCTGGACATGGGCACGCACACTTTGACCAGGCGG
CAGGCCCACGTACCATTTACCCACGTTCTTGATGACGGTGGAGTCGCGGT
GTCGCTGCACCCACTCCCGATCCCTGTCGATCTCTAGAATTCGGTGGTTG
GCGGTGACCAGAGGAGGCAGTGAACTGCCCACATCGTCATCGTTGAGGTG
GTAATTGTCCCCGGGTCCGCTCATGGCACTGGTGCCCGATCCACCTGTGG
GCGGCAGGTAGCCCAGGCCGGAGTCGCCTTCCCTGGAGGCTCCAGCTCCA
CCTCCTCGACGACTGCTTCCACCACCGGCAGCACCTCCCCTTCCTGCTCC
CCGCTCAGAGGAGACACTTACTCCACCAACGCCGCCGAATCGGTTTCTGT
TTCGGGACCCACTAACATTGTTTCTCGTGGAGCTACCTGAACCACCTCTC
TGAGAGCTGTCACCTCCGGCATCGTATCTAGTACTGCCCCGTTGCGGACT
ACCCGCAGGGAACCCTCTTCTGTCTTCTTTGCCATTAAAGTTGGTGGAAC
CAGAGGAGCTGCTGCCAAGCCCAATGTCATCCCCTTGGTCATCAGCATGG
TGTCCCAGATTTTCATCAGCTGCCCCAGCATCACCATCTCCACGATTCCT
ATCTCTTGCTCCATCAGCCGGCTTTAGGTAATCTTTGCCTCCGGGTCTGC
TTGGAGTACGGCCCCTTCCCGCTCCACCTGCACCACCACTTGGCCCCGAA
GCTCCTACCGAAACACTTCCCCCACCTGATCCACCCACACCTCCCTTCNG
ACCTAAGCCACCACCAGCACCCC
BO07875.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9665-PA | 1494 | CG9665-RA | 587..1491 | 923..19 | 4456 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:47:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr73D-RC | 2676 | CG9665-RC | 1631..2535 | 923..19 | 4484 | 99.7 | Minus |
| Cpr73D-RB | 2158 | CG9665-RB | 1113..2017 | 923..19 | 4484 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:47:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16939241..16940145 | 19..923 | 4484 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:47:42 has no hits.
BO07875.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:36 Download gff for
BO07875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9665-PA | 587..1494 | 15..923 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:18 Download gff for
BO07875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9665-PA | 587..1494 | 15..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:11:11 Download gff for
BO07875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr73D-RB | 1113..2022 | 13..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:21:50 Download gff for
BO07875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr73D-RB | 1113..2022 | 13..923 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:21:50 Download gff for
BO07875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16939236..16940145 | 13..923 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:11:11 Download gff for
BO07875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16932336..16933245 | 13..923 | 99 | | Plus |
BO07875.5prime Sequence
784 bp (749 high quality bases) assembled on 2006-01-06
> BO07875.5prime
GAAGTTATCAGTCGACATGGACCTGGCTCAGTATCCGGTACTGCCGCGGG
GAAGTCCGGACGATCCGCTGGCCGATCCCTTCGACGATCCATCCTACAGC
TTTAGTTTTCGCACTCCGGATCAGTCGCGCAGCGAGGAGAATGATTCCGG
GAATAGGATAAGAGGTCTGTACTCCTATTTGGACGACGTGGGCGAGCGGC
ACAGTGTTCGTTATGCAGCTGGAGCCGGAACCGGATTCGAGATCTCCAAC
GCTGTGCCGGACAGCCCATCTGTTGTGGCGTACTCCAGTCCTCTGTACAC
GTCCCATCCCAAAGCACGCGGCAAGATGTCTGTGCAAAGGGGGCCGGCTG
GAAGCTATAAGCTGATCGCCTCAGGTTCGGATCACCGACGGGCAGAAAGT
CGAGCACCCGATGGCCTGGTGCGAGGAACCTACTCCTTCCTGGACGACAA
GGGCGTGCAGCGGACAGTGGAGTATATAGCTGGAGCAGGAATTGGCTACC
GGGTGGTGCAAAATCGGATTGGTCCTGGAACCCATAACAATCCCTCTGTG
GCTGATTTTCGTTTGACAGATCCAGATTTCCGACTGGCTAATGATTTTGG
CAGGGGTGCTGGTGGTGGCTTAGGTCCGAAGGGAGGTGGTGGTGGATCAG
TGGGGGGGAGGTGTTTCGGTAGGAGCTTCGGGGCCNAGTGGTGGTGCAGG
TGGAGCGGGAAGGGGCCGTACTCCAAGCAGACCCGGAGGCAAAGATTACC
TAAAGCCGGCTGATGGAGCAAGAGATAGGAATCG
BO07875.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9665-PA | 1494 | CG9665-RA | 1..634 | 17..650 | 3170 | 100 | Plus |
| CG9665-PA | 1494 | CG9665-RA | 637..767 | 654..784 | 611 | 98.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:47:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr73D-RC | 2676 | CG9665-RC | 1045..1811 | 17..784 | 3774 | 99.5 | Plus |
| Cpr73D-RB | 2158 | CG9665-RB | 527..1293 | 17..784 | 3774 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:47:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16939965..16940585 | 784..163 | 3019 | 99.4 | Minus |
| 3L | 28110227 | 3L | 16940635..16940783 | 165..17 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:47:55 has no hits.
BO07875.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:37 Download gff for
BO07875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9665-PA | 1..767 | 17..784 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:19 Download gff for
BO07875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9665-PA | 1..767 | 17..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:11:14 Download gff for
BO07875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr73D-RB | 518..1293 | 9..784 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:21:52 Download gff for
BO07875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr73D-RB | 518..1293 | 9..784 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:21:52 Download gff for
BO07875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16939965..16940583 | 165..784 | 99 | <- | Minus |
| 3L | 16940636..16940792 | 9..164 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:11:14 Download gff for
BO07875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16933065..16933683 | 165..784 | 99 | <- | Minus |
| arm_3L | 16933736..16933892 | 9..164 | 97 | | Minus |
BO07875.complete Sequence
1525 bp (1525 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630975
> BO07875.complete
GAAGTTATCAGTCGACATGGACCTGGCTCAGTATCCGGTACTGCCGCGGG
GAAGTCCGGACGATCCGCTGGCCGATCCCTTCGACGATCCATCCTACAGC
TTTAGTTTTCGCACTCCGGATCAGTCGCGCAGCGAGGAGAATGATTCCGG
GAATAGGATAAGAGGTCTGTACTCCTATTTGGACGACGTGGGCGAGCGGC
ACAGTGTTCGTTATGCAGCTGGAGCCGGAACCGGATTCGAGATCTCCAAC
GCTGTGCCGGACAGCCCATCTGTTGTGGCGTACTCCAGTCCTCTGTACAC
GTCCCATCCCAAAGCACGCGGCAAGATGTCTGTGCAAAGGGGGCCGGCTG
GAAGCTATAAGCTGATCGCCTCAGGTTCGGATCACCGACGGGCAGAAAGT
CGAGCACCCGATGGCCTGGTGCGAGGAACCTACTCCTTCCTGGACGACAA
GGGCGTGCAGCGGACAGTGGAGTATATAGCTGGAGCAGGAATTGGCTACC
GGGTGGTGCAAAATCGGATTGGTCCTGGAACCCATAACAATCCCTCTGTG
GCTGATTTTCGTTTGACAGATCCAGATTTCCGACTGGCTAATGATTTTGG
CAGGGGTGCTGGTGGTGGCTTAGGTCCGAAGGGAGGTGGTGGTGGATCAG
GTGGGGGAAGTGTTTCGGTAGGAGCTTCGGGGCCAAGTGGTGGTGCAGGT
GGAGCGGGAAGGGGCCGTACTCCAAGCAGACCCGGAGGCAAAGATTACCT
AAAGCCGGCTGATGGAGCAAGAGATAGGAATCGTGGAGATGGTGATGCTG
GGGCAGCTGATGAAAATCTGGGACACCATGCTGATGACCAAGGGGATGAC
ATTGGGCTTGGCAGCAGCTCCTCTGGTTCCACCAACTTTAATGGCAAAGA
AGACAGAAGAGGGTTCCCTGCGGGTAGTCCGCAACGGGGCAGTACTAGAT
ACGATGCCGGAGGTGACAGCTCTCAGAGAGGTGGTTCAGGTAGCTCCACG
AGAAACAATGTTAGTGGGTCCCGAAACAGAAACCGATTCGGCGGCGTTGG
TGGAGTAAGTGTCTCCTCTGAGCGGGGAGCAGGAAGGGGAGGTGCTGCCG
GTGGTGGAAGCAGTCGTCGAGGAGGTGGAGCTGGAGCCTCCAGGGAAGGC
GACTCCGGCCTGGGCTACCTGCCGCCCACAGGTGGATCGGGCACCAGTGC
CATGAGCGGACCCGGGGACAATTACCACCTCAACGATGACGATGTGGGCA
GTTCACTGCCTCCTCTGGTCACCGCCAACCACCGAATTCTAGAGATCGAC
AGGGATCGGGAGTGGGTGCAGCGACACCGCGACTCCACCGTCATCAAGAA
CGTGGGTAAATGGTACGTGGGCCTGCCGCCTGGTCAAAGTGTGCGTGCCC
ATGTCCAGAACATCGACATAATACCCTTGGGCGGAAGGATCGGACTTTCG
CCGTCGGAGGCACTGCGTCAGGATGAGATCGCCGAGCTGAATGCCTCAAG
GGAGCACGCAAGCTTTCTAGACCAT
BO07875.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:32:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr73D-RC | 1494 | CG9665-PC | 1..1491 | 17..1507 | 7455 | 100 | Plus |
| Cpr73D-RB | 1794 | CG9665-PB | 301..1791 | 17..1507 | 7455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:32:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr73D-RC | 2676 | CG9665-RC | 1045..2535 | 17..1507 | 7455 | 100 | Plus |
| Cpr73D-RB | 2158 | CG9665-RB | 527..2017 | 17..1507 | 7455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:32:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16939241..16940585 | 1507..163 | 6725 | 100 | Minus |
| 3L | 28110227 | 3L | 16940635..16940783 | 165..17 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:32:34 has no hits.
BO07875.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:51 Download gff for
BO07875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr73D-RB | 292..1794 | 9..1511 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:29 Download gff for
BO07875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr73D-RB | 292..1796 | 9..1513 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:25 Download gff for
BO07875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr73D-RB | 527..2017 | 17..1509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:51 Download gff for
BO07875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr73D-RB | 292..1796 | 9..1513 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:27:30 Download gff for
BO07875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr73D-RB | 527..2017 | 17..1509 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:27:30 Download gff for
BO07875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16939239..16940583 | 165..1509 | 99 | <- | Minus |
| 3L | 16940636..16940783 | 17..164 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:25 Download gff for
BO07875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16932339..16933683 | 165..1509 | 99 | <- | Minus |
| arm_3L | 16933736..16933883 | 17..164 | 100 | | Minus |
BO07875.pep Sequence
Translation from 16 to 1525
> BO07875.pep
MDLAQYPVLPRGSPDDPLADPFDDPSYSFSFRTPDQSRSEENDSGNRIRG
LYSYLDDVGERHSVRYAAGAGTGFEISNAVPDSPSVVAYSSPLYTSHPKA
RGKMSVQRGPAGSYKLIASGSDHRRAESRAPDGLVRGTYSFLDDKGVQRT
VEYIAGAGIGYRVVQNRIGPGTHNNPSVADFRLTDPDFRLANDFGRGAGG
GLGPKGGGGGSGGGSVSVGASGPSGGAGGAGRGRTPSRPGGKDYLKPADG
ARDRNRGDGDAGAADENLGHHADDQGDDIGLGSSSSGSTNFNGKEDRRGF
PAGSPQRGSTRYDAGGDSSQRGGSGSSTRNNVSGSRNRNRFGGVGGVSVS
SERGAGRGGAAGGGSSRRGGGAGASREGDSGLGYLPPTGGSGTSAMSGPG
DNYHLNDDDVGSSLPPLVTANHRILEIDRDREWVQRHRDSTVIKNVGKWY
VGLPPGQSVRAHVQNIDIIPLGGRIGLSPSEALRQDEIAELNASREHASF
LDH
BO07875.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:37:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr73D-PC | 497 | CG9665-PC | 1..497 | 1..497 | 2626 | 100 | Plus |
| Cpr73D-PB | 597 | CG9665-PB | 101..597 | 1..497 | 2626 | 100 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 256..432 | 195..400 | 226 | 35.9 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 256..432 | 195..400 | 226 | 35.9 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 146..498 | 24..398 | 216 | 27.6 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 146..528 | 24..400 | 212 | 27.8 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 346..565 | 197..400 | 209 | 34.1 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 346..576 | 197..400 | 203 | 34.7 | Plus |
| caz-PD | 355 | CG3606-PD | 175..342 | 195..371 | 195 | 34.3 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 369..583 | 195..391 | 178 | 31.1 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 63..315 | 195..400 | 173 | 29.2 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 63..315 | 195..400 | 173 | 29.2 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 411..600 | 156..391 | 160 | 30.4 | Plus |
