Clone Sequence Records
BO07877.3prime Sequence
953 bp (856 high quality bases) assembled on 2006-01-06
> BO07877.3prime
ATGGTCTAGAAAGCTTGCAACGATCTGCACGGCGGCATGTGGTTTCTCGA
TGAGGCTACTCTGTGCCTCCTTGTCCTTCTCCGCATTCCGGCCGATTGAG
ACGTGCTCCGGTTTTAGATAGTAATGCGGCGGCGGAGGCTGCGATGTGGC
TTGAAGGCCCGCCTTCTTCCGACGCTCGCGGAGGAAGTGCAGTCGCACAT
AGTTAATGGGTATATCGACGCTATCGGCGCCCACGCCCTCGGCGTCGATG
AACACGCCGCGCACCAGGATGGAATTGGAGCACTTGAGGGCAGCGAGGAG
CAGGAAAGGAACGATATGTGTCAGCCAGAAGCTCAGCAGCTTGTTATCTG
GATACAGATACACATCCAGCAGATTCCAGATGCCGCGCCAGGCGTTCACA
GCTCCAAAGAAAGTCATTAGATAGTAGATGTCGCATATGATCAGCTTGAG
GATTCCGCTGATCCGACGACAAACGTACCTCATCAGTGGGTGAATAAGGA
AGGTCACAAAAACCGTCAGATATCCAATGAGCAGCGATCCCCAGGCCGAT
TTGGCCTTGTCCGCCGGGAACAGCAGCAGGTCAAAGATTCCCCAGACGCC
GCGCCAAGCGATGACCACCAGGCTGCCGATCACAAAGACCGAGAAGAGGG
TGTCCAAAATGTAAAGGCCAGGTTGATGAAAACCGGGTATTTTGAACATG
GTGTCCACCTCAAAGTAGTCACTCTTGTGATCCATGGTAACGGTGTAGGG
AGCTGCTCCGAGGTTCCGCAGAGTGCGTGTGGCTACCAGAAAGATGAGCG
CGATGGCCGTGACCACGGACACAATGATCAGAGAGTCCACACTGGTCAGC
CAATCGCAGAGCAGCCAGGCACCACGCCACATATTCACGCAAACGATGCC
GAATACGGCCGTATAGAGACGCGATACGGCGTAGTATGTGAGTCGCCTCC
GGT
BO07877.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14021-PB | 1362 | CG14021-RB | 425..1359 | 953..19 | 4675 | 100 | Minus |
CG14021-PA | 1362 | CG14021-RA | 425..1359 | 953..19 | 4675 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:37:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fusl-RF | 2908 | CG14021-RF | 1573..2507 | 953..19 | 4675 | 100 | Minus |
fusl-RE | 2754 | CG14021-RE | 1419..2353 | 953..19 | 4675 | 100 | Minus |
fusl-RD | 2703 | CG14021-RD | 1368..2302 | 953..19 | 4675 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:37:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5330871..5331202 | 19..350 | 1660 | 100 | Plus |
2L | 23513712 | 2L | 5331721..5331990 | 684..953 | 1350 | 100 | Plus |
2L | 23513712 | 2L | 5331259..5331447 | 344..532 | 930 | 99.5 | Plus |
2L | 23513712 | 2L | 5331508..5331660 | 532..684 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:37:34 has no hits.
BO07877.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:38 Download gff for
BO07877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14021-PA | 425..1362 | 18..953 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:20 Download gff for
BO07877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14021-PA | 425..1362 | 18..953 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:05:25 Download gff for
BO07877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fusl-RD | 1368..2302 | 19..953 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:52:15 Download gff for
BO07877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fusl-RD | 1368..2302 | 19..953 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:52:15 Download gff for
BO07877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5330871..5331199 | 19..347 | 100 | <- | Plus |
2L | 5331263..5331446 | 348..531 | 100 | <- | Plus |
2L | 5331508..5331660 | 532..684 | 100 | <- | Plus |
2L | 5331722..5331990 | 685..953 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:05:25 Download gff for
BO07877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5330871..5331199 | 19..347 | 100 | <- | Plus |
arm_2L | 5331263..5331446 | 348..531 | 100 | <- | Plus |
arm_2L | 5331508..5331660 | 532..684 | 100 | <- | Plus |
arm_2L | 5331722..5331990 | 685..953 | 100 | | Plus |
BO07877.5prime Sequence
887 bp (799 high quality bases) assembled on 2006-01-06
> BO07877.5prime
GAAGTTATCAGTCGACATGTTGCCCACGGACAAGGGCAGTTTGACGGCCG
GCAGGCCGCAAAAATCTCATTGCCATGGATCGGTATCCGTGTCGGATCAG
CAGCTCCTGCAGCACCTCCATCCACACACGCATCCGCGTCCAGTGCACCT
GCCACCCGCACATGCCACACACTCACCCGCCTGCGAGAAGCGCTTGGAGG
CGGAGACGCCGCGCCGGGATCTCCACGAGCTGCTGCTCGAGCTGCTGGAC
ATGATGATGTCCTGCCTGGTGGTGGCTCCCTGTGTGATCGCCTACTGGCG
TGGCACCTGGGAACTGATGTTCGTCTACCTGTTTCCCGGCAGCTTGCCGC
TGTCTGCGATGGCCAGCTTTCTGATCGGCGGACTGGGGCACTTCTTCTTC
ACAGTCACACAGAACTTCTTCAAGGAGCACATCCATCCGGACCGGAGGCG
ACTCACATACTACGCCGTATCGCGTCTCTATACGGCCGTATTCGGCATCG
TTTGCGTGAATATGTGGCGTGGTGCCTGGCTGCTCTGCGATTGGCTGACC
AGTGTGGACTCTCTGATCATTGTGTCCGTGGTCACGGCCATCGCGCTCAT
CTTTCTGGTAGCCACACGCACTCTGCGGAACCTCGGAGCAGCTCCCTACA
CCGTTACCATGGATCACAAGAGTGACTACTTTGAGGTGGACACCATGTTC
AAAATACCCGGTTTTCATCAACCTGGCCTTTACATTTTGGACACCCTCTT
CTCGGTCTTTGTGATCGGCAGCCTGGTGGTCATCGCTTGGCGCGGCGTCT
GGGGAATCTTTGACCTGCTGCTGTTCCCGGCGGACAAAGCCAAATCGGCC
TGGGGATCGCTGCTCATTGGATATCTGACGGTTTTTG
BO07877.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14021-PB | 1362 | CG14021-RB | 1..871 | 17..887 | 4330 | 99.8 | Plus |
CG14021-PA | 1362 | CG14021-RA | 1..871 | 17..887 | 4330 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:37:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fusl-RF | 2908 | CG14021-RF | 1145..2019 | 13..887 | 4345 | 99.8 | Plus |
fusl-RE | 2754 | CG14021-RE | 991..1865 | 13..887 | 4345 | 99.8 | Plus |
fusl-RD | 2703 | CG14021-RD | 940..1814 | 13..887 | 4345 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:37:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5331721..5332418 | 710..13 | 3475 | 99.9 | Minus |
2L | 23513712 | 2L | 5331508..5331660 | 862..710 | 750 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:37:44 has no hits.
BO07877.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:38 Download gff for
BO07877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14021-PA | 1..871 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:21 Download gff for
BO07877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14021-PA | 1..871 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:05:26 Download gff for
BO07877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fusl-RD | 934..1814 | 6..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:52:25 Download gff for
BO07877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fusl-RD | 934..1814 | 6..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:52:25 Download gff for
BO07877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5331422..5331446 | 863..887 | 100 | <- | Minus |
2L | 5331508..5331660 | 710..862 | 99 | <- | Minus |
2L | 5331722..5332424 | 6..709 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:05:26 Download gff for
BO07877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5331422..5331446 | 863..887 | 100 | <- | Minus |
arm_2L | 5331508..5331660 | 710..862 | 99 | <- | Minus |
arm_2L | 5331722..5332424 | 6..709 | 99 | | Minus |
BO07877.complete Sequence
1393 bp (1393 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630976
> BO07877.complete
GAAGTTATCAGTCGACATGTTGCCCACGGACAAGGGCAGTTTGACGGCCG
GCAGGCCGCAAAAATCTCATTGCCATGGATCGGTATCCGTGTCGGATCAG
CAGCTCCTGCAGCACCTCCATCCACACACGCATCCGCGTCCAGTGCACCT
GCCACCCGCACATGCCACACACTCACCCGCCTGCGAGAAGCGCTTGGAGG
CGGAGACGCCGCGCCGGGATCTCCACGAGCTGCTGCTCGAGCTGCTGGAC
ATGATGATGTCCTGCCTGGTGGTGGCTCCCTGTGTGATCGCCTACTGGCG
TGGCACCTGGGAACTGATGTTCGTCTACCTGTTTCCCGGCAGCTTGCCGC
TGTCTGCGATGGCCAGCTTTCTGATCGGCGGACTGGGGCACTTCTTCTTC
ACAGTCACACAGAACTTCTTCAAGGAGCACATCCATCCGGACCGGAGGCG
ACTCACATACTACGCCGTATCGCGTCTCTATACGGCCGTATTCGGCATCG
TTTGCGTGAATATGTGGCGTGGTGCCTGGCTGCTCTGCGATTGGCTGACC
AGTGTGGACTCTCTGATCATTGTGTCCGTGGTCACGGCCATCGCGCTCAT
CTTTCTGGTAGCCACACGCACTCTGCGGAACCTCGGAGCAGCTCCCTACA
CCGTTACCATGGATCACAAGAGTGACTACTTTGAGGTGGACACCATGTTC
AAAATACCCGGTTTTCATCAACCTGGCCTTTACATTTTGGACACCCTCTT
CTCGGTCTTTGTGATCGGCAGCCTGGTGGTCATCGCTTGGCGCGGCGTCT
GGGGAATCTTTGACCTGCTGCTGTTCCCGGCGGACAAGGCCAAATCGGCC
TGGGGATCGCTGCTCATTGGATATCTGACGGTTTTTGTGACCTTCCTTAT
TCACCCACTGATGAGGTACGTTTGTCGTCGGATCAGCGGAATCCTCAAGC
TGATCATATGCGACATCTACTATCTAATGACTTTCTTTGGAGCTGTGAAC
GCCTGGCGCGGCATCTGGAATCTGCTGGATGTGTATCTGTATCCAGATAA
CAAGCTGCTGAGCTTCTGGCTGACACATATCGTTCCTTTCCTGCTCCTCG
CTGCCCTCAAGTGCTCCAATTCCATCCTGGTGCGCGGCGTGTTCATCGAC
GCCGAGGGCGTGGGCGCCGATAGCGTCGATATACCCATTAACTATGTGCG
ACTGCACTTCCTCCGCGAGCGTCGGAAGAAGGCGGGCCTTCAAGCCACAT
CGCAGCCTCCGCCGCCGCATTACTATCTAAAACCGGAGCACGTCTCAATC
GGCCGGAATGCGGAGAAGGACAAGGAGGCACAGAGTAGCCTCATCGAGAA
ACCACATGCCGCCGTGCAGATCGTTGCAAGCTTTCTAGACCAT
BO07877.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:45:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fusl-RF | 1362 | CG14021-PF | 1..1359 | 17..1375 | 6795 | 100 | Plus |
fusl-RE | 1362 | CG14021-PE | 1..1359 | 17..1375 | 6795 | 100 | Plus |
fusl-RD | 1362 | CG14021-PD | 1..1359 | 17..1375 | 6795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:46:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fusl-RF | 2908 | CG14021-RF | 1145..2507 | 13..1375 | 6800 | 99.9 | Plus |
fusl-RE | 2754 | CG14021-RE | 991..2353 | 13..1375 | 6800 | 99.9 | Plus |
fusl-RD | 2703 | CG14021-RD | 940..2302 | 13..1375 | 6800 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:45:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5331721..5332418 | 710..13 | 3475 | 99.9 | Minus |
2L | 23513712 | 2L | 5330871..5331202 | 1375..1044 | 1660 | 100 | Minus |
2L | 23513712 | 2L | 5331259..5331447 | 1050..862 | 930 | 99.5 | Minus |
2L | 23513712 | 2L | 5331508..5331660 | 862..710 | 765 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:45:58 has no hits.
BO07877.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:16 Download gff for
BO07877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14021-RA | 1..1362 | 17..1376 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:41 Download gff for
BO07877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14021-RA | 847..2215 | 6..1375 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:16 Download gff for
BO07877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fusl-RD | 949..2302 | 22..1377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:16 Download gff for
BO07877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14021-RA | 847..2215 | 6..1375 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:25 Download gff for
BO07877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fusl-RD | 949..2302 | 22..1377 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:25 Download gff for
BO07877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5331263..5331446 | 863..1046 | 100 | <- | Minus |
2L | 5331508..5331660 | 710..862 | 100 | <- | Minus |
2L | 5330869..5331199 | 1047..1377 | 99 | <- | Minus |
2L | 5331722..5332409 | 22..709 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:16 Download gff for
BO07877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5330869..5331199 | 1047..1377 | 99 | <- | Minus |
arm_2L | 5331263..5331446 | 863..1046 | 100 | <- | Minus |
arm_2L | 5331508..5331660 | 710..862 | 100 | <- | Minus |
arm_2L | 5331722..5332409 | 22..709 | 100 | | Minus |
BO07877.pep Sequence
Translation from 16 to 1393
> BO07877.pep
MLPTDKGSLTAGRPQKSHCHGSVSVSDQQLLQHLHPHTHPRPVHLPPAHA
THSPACEKRLEAETPRRDLHELLLELLDMMMSCLVVAPCVIAYWRGTWEL
MFVYLFPGSLPLSAMASFLIGGLGHFFFTVTQNFFKEHIHPDRRRLTYYA
VSRLYTAVFGIVCVNMWRGAWLLCDWLTSVDSLIIVSVVTAIALIFLVAT
RTLRNLGAAPYTVTMDHKSDYFEVDTMFKIPGFHQPGLYILDTLFSVFVI
GSLVVIAWRGVWGIFDLLLFPADKAKSAWGSLLIGYLTVFVTFLIHPLMR
YVCRRISGILKLIICDIYYLMTFFGAVNAWRGIWNLLDVYLYPDNKLLSF
WLTHIVPFLLLAALKCSNSILVRGVFIDAEGVGADSVDIPINYVRLHFLR
ERRKKAGLQATSQPPPPHYYLKPEHVSIGRNAEKDKEAQSSLIEKPHAAV
QIVASFLDH
BO07877.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fusl-PF | 453 | CG14021-PF | 1..453 | 1..453 | 2409 | 100 | Plus |
fusl-PE | 453 | CG14021-PE | 1..453 | 1..453 | 2409 | 100 | Plus |
fusl-PD | 453 | CG14021-PD | 1..453 | 1..453 | 2409 | 100 | Plus |
fusl-PC | 453 | CG14021-PC | 1..453 | 1..453 | 2409 | 100 | Plus |
fusl-PA | 453 | CG14021-PA | 1..453 | 1..453 | 2409 | 100 | Plus |