Clone BO07877 Report

Search the DGRC for BO07877

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:78
Well:77
Vector:pDNR-Dual
Associated Gene/Transcriptfusl-RA
Protein status:BO07877.pep: validated full length
Sequenced Size:1393

Clone Sequence Records

BO07877.3prime Sequence

953 bp (856 high quality bases) assembled on 2006-01-06

> BO07877.3prime
ATGGTCTAGAAAGCTTGCAACGATCTGCACGGCGGCATGTGGTTTCTCGA
TGAGGCTACTCTGTGCCTCCTTGTCCTTCTCCGCATTCCGGCCGATTGAG
ACGTGCTCCGGTTTTAGATAGTAATGCGGCGGCGGAGGCTGCGATGTGGC
TTGAAGGCCCGCCTTCTTCCGACGCTCGCGGAGGAAGTGCAGTCGCACAT
AGTTAATGGGTATATCGACGCTATCGGCGCCCACGCCCTCGGCGTCGATG
AACACGCCGCGCACCAGGATGGAATTGGAGCACTTGAGGGCAGCGAGGAG
CAGGAAAGGAACGATATGTGTCAGCCAGAAGCTCAGCAGCTTGTTATCTG
GATACAGATACACATCCAGCAGATTCCAGATGCCGCGCCAGGCGTTCACA
GCTCCAAAGAAAGTCATTAGATAGTAGATGTCGCATATGATCAGCTTGAG
GATTCCGCTGATCCGACGACAAACGTACCTCATCAGTGGGTGAATAAGGA
AGGTCACAAAAACCGTCAGATATCCAATGAGCAGCGATCCCCAGGCCGAT
TTGGCCTTGTCCGCCGGGAACAGCAGCAGGTCAAAGATTCCCCAGACGCC
GCGCCAAGCGATGACCACCAGGCTGCCGATCACAAAGACCGAGAAGAGGG
TGTCCAAAATGTAAAGGCCAGGTTGATGAAAACCGGGTATTTTGAACATG
GTGTCCACCTCAAAGTAGTCACTCTTGTGATCCATGGTAACGGTGTAGGG
AGCTGCTCCGAGGTTCCGCAGAGTGCGTGTGGCTACCAGAAAGATGAGCG
CGATGGCCGTGACCACGGACACAATGATCAGAGAGTCCACACTGGTCAGC
CAATCGCAGAGCAGCCAGGCACCACGCCACATATTCACGCAAACGATGCC
GAATACGGCCGTATAGAGACGCGATACGGCGTAGTATGTGAGTCGCCTCC
GGT

BO07877.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG14021-PB 1362 CG14021-RB 425..1359 953..19 4675 100 Minus
CG14021-PA 1362 CG14021-RA 425..1359 953..19 4675 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:37:35
Subject Length Description Subject Range Query Range Score Percent Strand
fusl-RF 2908 CG14021-RF 1573..2507 953..19 4675 100 Minus
fusl-RE 2754 CG14021-RE 1419..2353 953..19 4675 100 Minus
fusl-RD 2703 CG14021-RD 1368..2302 953..19 4675 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5330871..5331202 19..350 1660 100 Plus
2L 23513712 2L 5331721..5331990 684..953 1350 100 Plus
2L 23513712 2L 5331259..5331447 344..532 930 99.5 Plus
2L 23513712 2L 5331508..5331660 532..684 765 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:37:34 has no hits.

BO07877.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:38 Download gff for BO07877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14021-PA 425..1362 18..953 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:20 Download gff for BO07877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14021-PA 425..1362 18..953 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:05:25 Download gff for BO07877.3prime
Subject Subject Range Query Range Percent Splice Strand
fusl-RD 1368..2302 19..953 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:52:15 Download gff for BO07877.3prime
Subject Subject Range Query Range Percent Splice Strand
fusl-RD 1368..2302 19..953 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:52:15 Download gff for BO07877.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5330871..5331199 19..347 100 <- Plus
2L 5331263..5331446 348..531 100 <- Plus
2L 5331508..5331660 532..684 100 <- Plus
2L 5331722..5331990 685..953 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:05:25 Download gff for BO07877.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5330871..5331199 19..347 100 <- Plus
arm_2L 5331263..5331446 348..531 100 <- Plus
arm_2L 5331508..5331660 532..684 100 <- Plus
arm_2L 5331722..5331990 685..953 100   Plus

BO07877.5prime Sequence

887 bp (799 high quality bases) assembled on 2006-01-06

> BO07877.5prime
GAAGTTATCAGTCGACATGTTGCCCACGGACAAGGGCAGTTTGACGGCCG
GCAGGCCGCAAAAATCTCATTGCCATGGATCGGTATCCGTGTCGGATCAG
CAGCTCCTGCAGCACCTCCATCCACACACGCATCCGCGTCCAGTGCACCT
GCCACCCGCACATGCCACACACTCACCCGCCTGCGAGAAGCGCTTGGAGG
CGGAGACGCCGCGCCGGGATCTCCACGAGCTGCTGCTCGAGCTGCTGGAC
ATGATGATGTCCTGCCTGGTGGTGGCTCCCTGTGTGATCGCCTACTGGCG
TGGCACCTGGGAACTGATGTTCGTCTACCTGTTTCCCGGCAGCTTGCCGC
TGTCTGCGATGGCCAGCTTTCTGATCGGCGGACTGGGGCACTTCTTCTTC
ACAGTCACACAGAACTTCTTCAAGGAGCACATCCATCCGGACCGGAGGCG
ACTCACATACTACGCCGTATCGCGTCTCTATACGGCCGTATTCGGCATCG
TTTGCGTGAATATGTGGCGTGGTGCCTGGCTGCTCTGCGATTGGCTGACC
AGTGTGGACTCTCTGATCATTGTGTCCGTGGTCACGGCCATCGCGCTCAT
CTTTCTGGTAGCCACACGCACTCTGCGGAACCTCGGAGCAGCTCCCTACA
CCGTTACCATGGATCACAAGAGTGACTACTTTGAGGTGGACACCATGTTC
AAAATACCCGGTTTTCATCAACCTGGCCTTTACATTTTGGACACCCTCTT
CTCGGTCTTTGTGATCGGCAGCCTGGTGGTCATCGCTTGGCGCGGCGTCT
GGGGAATCTTTGACCTGCTGCTGTTCCCGGCGGACAAAGCCAAATCGGCC
TGGGGATCGCTGCTCATTGGATATCTGACGGTTTTTG

BO07877.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG14021-PB 1362 CG14021-RB 1..871 17..887 4330 99.8 Plus
CG14021-PA 1362 CG14021-RA 1..871 17..887 4330 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:37:45
Subject Length Description Subject Range Query Range Score Percent Strand
fusl-RF 2908 CG14021-RF 1145..2019 13..887 4345 99.8 Plus
fusl-RE 2754 CG14021-RE 991..1865 13..887 4345 99.8 Plus
fusl-RD 2703 CG14021-RD 940..1814 13..887 4345 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5331721..5332418 710..13 3475 99.9 Minus
2L 23513712 2L 5331508..5331660 862..710 750 99.3 Minus
Blast to na_te.dros performed on 2015-02-13 05:37:44 has no hits.

BO07877.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:38 Download gff for BO07877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14021-PA 1..871 17..887 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:21 Download gff for BO07877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14021-PA 1..871 17..887 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:05:26 Download gff for BO07877.5prime
Subject Subject Range Query Range Percent Splice Strand
fusl-RD 934..1814 6..887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:52:25 Download gff for BO07877.5prime
Subject Subject Range Query Range Percent Splice Strand
fusl-RD 934..1814 6..887 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:52:25 Download gff for BO07877.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5331422..5331446 863..887 100 <- Minus
2L 5331508..5331660 710..862 99 <- Minus
2L 5331722..5332424 6..709 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:05:26 Download gff for BO07877.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5331422..5331446 863..887 100 <- Minus
arm_2L 5331508..5331660 710..862 99 <- Minus
arm_2L 5331722..5332424 6..709 99   Minus

BO07877.complete Sequence

1393 bp (1393 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630976

> BO07877.complete
GAAGTTATCAGTCGACATGTTGCCCACGGACAAGGGCAGTTTGACGGCCG
GCAGGCCGCAAAAATCTCATTGCCATGGATCGGTATCCGTGTCGGATCAG
CAGCTCCTGCAGCACCTCCATCCACACACGCATCCGCGTCCAGTGCACCT
GCCACCCGCACATGCCACACACTCACCCGCCTGCGAGAAGCGCTTGGAGG
CGGAGACGCCGCGCCGGGATCTCCACGAGCTGCTGCTCGAGCTGCTGGAC
ATGATGATGTCCTGCCTGGTGGTGGCTCCCTGTGTGATCGCCTACTGGCG
TGGCACCTGGGAACTGATGTTCGTCTACCTGTTTCCCGGCAGCTTGCCGC
TGTCTGCGATGGCCAGCTTTCTGATCGGCGGACTGGGGCACTTCTTCTTC
ACAGTCACACAGAACTTCTTCAAGGAGCACATCCATCCGGACCGGAGGCG
ACTCACATACTACGCCGTATCGCGTCTCTATACGGCCGTATTCGGCATCG
TTTGCGTGAATATGTGGCGTGGTGCCTGGCTGCTCTGCGATTGGCTGACC
AGTGTGGACTCTCTGATCATTGTGTCCGTGGTCACGGCCATCGCGCTCAT
CTTTCTGGTAGCCACACGCACTCTGCGGAACCTCGGAGCAGCTCCCTACA
CCGTTACCATGGATCACAAGAGTGACTACTTTGAGGTGGACACCATGTTC
AAAATACCCGGTTTTCATCAACCTGGCCTTTACATTTTGGACACCCTCTT
CTCGGTCTTTGTGATCGGCAGCCTGGTGGTCATCGCTTGGCGCGGCGTCT
GGGGAATCTTTGACCTGCTGCTGTTCCCGGCGGACAAGGCCAAATCGGCC
TGGGGATCGCTGCTCATTGGATATCTGACGGTTTTTGTGACCTTCCTTAT
TCACCCACTGATGAGGTACGTTTGTCGTCGGATCAGCGGAATCCTCAAGC
TGATCATATGCGACATCTACTATCTAATGACTTTCTTTGGAGCTGTGAAC
GCCTGGCGCGGCATCTGGAATCTGCTGGATGTGTATCTGTATCCAGATAA
CAAGCTGCTGAGCTTCTGGCTGACACATATCGTTCCTTTCCTGCTCCTCG
CTGCCCTCAAGTGCTCCAATTCCATCCTGGTGCGCGGCGTGTTCATCGAC
GCCGAGGGCGTGGGCGCCGATAGCGTCGATATACCCATTAACTATGTGCG
ACTGCACTTCCTCCGCGAGCGTCGGAAGAAGGCGGGCCTTCAAGCCACAT
CGCAGCCTCCGCCGCCGCATTACTATCTAAAACCGGAGCACGTCTCAATC
GGCCGGAATGCGGAGAAGGACAAGGAGGCACAGAGTAGCCTCATCGAGAA
ACCACATGCCGCCGTGCAGATCGTTGCAAGCTTTCTAGACCAT

BO07877.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:45:59
Subject Length Description Subject Range Query Range Score Percent Strand
fusl-RF 1362 CG14021-PF 1..1359 17..1375 6795 100 Plus
fusl-RE 1362 CG14021-PE 1..1359 17..1375 6795 100 Plus
fusl-RD 1362 CG14021-PD 1..1359 17..1375 6795 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
fusl-RF 2908 CG14021-RF 1145..2507 13..1375 6800 99.9 Plus
fusl-RE 2754 CG14021-RE 991..2353 13..1375 6800 99.9 Plus
fusl-RD 2703 CG14021-RD 940..2302 13..1375 6800 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5331721..5332418 710..13 3475 99.9 Minus
2L 23513712 2L 5330871..5331202 1375..1044 1660 100 Minus
2L 23513712 2L 5331259..5331447 1050..862 930 99.5 Minus
2L 23513712 2L 5331508..5331660 862..710 765 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:45:58 has no hits.

BO07877.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:16 Download gff for BO07877.complete
Subject Subject Range Query Range Percent Splice Strand
CG14021-RA 1..1362 17..1376 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:41 Download gff for BO07877.complete
Subject Subject Range Query Range Percent Splice Strand
CG14021-RA 847..2215 6..1375 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:16 Download gff for BO07877.complete
Subject Subject Range Query Range Percent Splice Strand
fusl-RD 949..2302 22..1377 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:16 Download gff for BO07877.complete
Subject Subject Range Query Range Percent Splice Strand
CG14021-RA 847..2215 6..1375 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:25 Download gff for BO07877.complete
Subject Subject Range Query Range Percent Splice Strand
fusl-RD 949..2302 22..1377 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:25 Download gff for BO07877.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5331263..5331446 863..1046 100 <- Minus
2L 5331508..5331660 710..862 100 <- Minus
2L 5330869..5331199 1047..1377 99 <- Minus
2L 5331722..5332409 22..709 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:16 Download gff for BO07877.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5330869..5331199 1047..1377 99 <- Minus
arm_2L 5331263..5331446 863..1046 100 <- Minus
arm_2L 5331508..5331660 710..862 100 <- Minus
arm_2L 5331722..5332409 22..709 100   Minus

BO07877.pep Sequence

Translation from 16 to 1393

> BO07877.pep
MLPTDKGSLTAGRPQKSHCHGSVSVSDQQLLQHLHPHTHPRPVHLPPAHA
THSPACEKRLEAETPRRDLHELLLELLDMMMSCLVVAPCVIAYWRGTWEL
MFVYLFPGSLPLSAMASFLIGGLGHFFFTVTQNFFKEHIHPDRRRLTYYA
VSRLYTAVFGIVCVNMWRGAWLLCDWLTSVDSLIIVSVVTAIALIFLVAT
RTLRNLGAAPYTVTMDHKSDYFEVDTMFKIPGFHQPGLYILDTLFSVFVI
GSLVVIAWRGVWGIFDLLLFPADKAKSAWGSLLIGYLTVFVTFLIHPLMR
YVCRRISGILKLIICDIYYLMTFFGAVNAWRGIWNLLDVYLYPDNKLLSF
WLTHIVPFLLLAALKCSNSILVRGVFIDAEGVGADSVDIPINYVRLHFLR
ERRKKAGLQATSQPPPPHYYLKPEHVSIGRNAEKDKEAQSSLIEKPHAAV
QIVASFLDH

BO07877.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
fusl-PF 453 CG14021-PF 1..453 1..453 2409 100 Plus
fusl-PE 453 CG14021-PE 1..453 1..453 2409 100 Plus
fusl-PD 453 CG14021-PD 1..453 1..453 2409 100 Plus
fusl-PC 453 CG14021-PC 1..453 1..453 2409 100 Plus
fusl-PA 453 CG14021-PA 1..453 1..453 2409 100 Plus