Clone Sequence Records
BO07879.3prime Sequence
920 bp (905 high quality bases) assembled on 2006-01-06
> BO07879.3prime
ATGGTCTAGAAAGCTTGCGAAGAGCGACTCCCTGGGATAAAATGTATCCC
AAACGGCTAGGCAATCGGACTCCGGCAAATCTCGCATCTCAAGATCGTGG
CTAATGTTGAAGCACTTCTCCACGGCATTTTCTTTAAGCTGGACGGCTTC
CCATTTGGCAGATCCCAGTTCTGGGCAATTTGGATTCCCACTGGAGGCAA
ACGACGTCCACATGCCAACCATTCTCTCAATGGTTTTGTATTCCATCGAT
GACTTATCCAGTTTGGAGGCTATGATGTTGTAGAACAGGTATGATAGTTC
ATCCGCATGGGCTACTCCGCGAATCCGATCGCCGCACACCAGTCGGCGAA
ATTGATTGAAGTGCGGGGAGTCGAAGTCAAAACGATATAGATAGGTGGGC
GTTTTGGGGGCATAAGATTGACGGGCGAGAATAAAGCGATGCGTATCGTG
CCAAATCTGGCGATGCGAAAATATATTCAGGGCCTCGAACATCTCCATCG
ATTCCTGCATCTCGTTGTTGAAGTAGAGTTGCTTTAGTCGCCGCACCAGT
AGATCCTGCCCTTCCAGACTGCTCGTTTCTCTAACCTCCCTTGGCAGGAT
GTTGTGAAAGTTTTTCAAGGCCCAAGGATCTTTTCTTACTAGTTGGTAGG
AAAACAAGCCCTCGAAAGAATTTCCACCGACAATAACGGGAATGTCGTTG
CCCCACGCTTCGGACAACAGATCCTTGTGCCTTTTGGGCACCACACAGTG
GTCGGTTTCGTAGGGTTCTATCACAGGACCAAATGCGAATAGTAGGAAGC
TTCGCACCTCGTCCAAATTGATAACGTCCTGATCAATAGCCGCTATCTGG
CGTGCGCAAACCTTACTAAGAAAGCTTAGTACATCCGCATCCTTCTCGTC
GCCCTTGTAGCCCAGATTCT
BO07879.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2505-PA | 1701 | alpha-Est2-RA | 797..1698 | 920..19 | 4510 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:24:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est2-RB | 2141 | CG2505-RB | 1085..1986 | 920..19 | 4510 | 100 | Minus |
alpha-Est2-RA | 1958 | CG2505-RA | 902..1803 | 920..19 | 4510 | 100 | Minus |
alpha-Est1-RA | 2123 | CG1031-RA | 1495..1698 | 411..208 | 240 | 75.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:24:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7544174..7545075 | 920..19 | 4510 | 100 | Minus |
3R | 32079331 | 3R | 7546158..7546361 | 208..411 | 240 | 74.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:24:32 has no hits.
BO07879.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:42 Download gff for
BO07879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2505-PA | 797..1701 | 18..920 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:25 Download gff for
BO07879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2505-PA | 797..1701 | 18..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:49:37 Download gff for
BO07879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est2-RA | 902..1808 | 11..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:48 Download gff for
BO07879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est2-RA | 902..1808 | 11..920 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:48 Download gff for
BO07879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7544174..7545080 | 11..920 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:49:37 Download gff for
BO07879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3369896..3370802 | 11..920 | 99 | | Minus |
BO07879.5prime Sequence
931 bp (710 high quality bases) assembled on 2006-01-06
> BO07879.5prime
GAAGTTATCAGTCGACATGGAGGTGCAAGTGGGATGGCCAAAGCTGATCA
AGATGGGAGCCCAGTTGGTTGGCCACAAGGTGCAACAGTACCGGCTCTCC
ACGGGTCACACAGTGATTTTGGACACCAAGTACGGACAGGTGCGCGGACT
CCAAAGGAAGACGGTCTACGACAAGGAGCCGTACTTTGCCTTCGAGGGCA
TTCCGTACGCCAAGCCCCCCGTGGGTGACCTCCGATTCAGGGCTCCTCAG
CCACCGGAACCCTGGCAAGGAGTGCTCAACTGCACTACCAATCGATCCAA
GCCCATGCAGAGGAACATGCTCCTGGGAATTGTCGAGGGCAGTGAGGATT
GTTTGCATTTGAACGTTTATGTCAAAGCCTTGAAGTCGGAAAAACCGCTG
CCCGTAATTGTGTGGATTTACGGAGGTGGTTTCCAAAAGGGTGAGGCCTC
CAGGGATATTTACAGTCCGGATTACTTCATGAAGAAGCCAGTGGTATTCG
TCGCTATCAACTACAGGTTGGCAGCACTAGGATTTCTCAGTCTAAAGGAC
CCGAAGCTGGATGTTCCTGGCAATGCGGGACTTAAGGACCAAGTAATGGC
TCTGCGTTGGATAAGTCAGAACATCGCCCACTTCAATGGCGACCCCAACA
ACATCACATTGATGGGAGAAAGTGCAGGATCGGCTTCTGTCCACGTCATG
ATGACCACAGAGCAAACACGTGGTCTCTTCCATAAGGCTATCATGCAATC
GGGATGTGCCCTCAGCGAATGGGTGGAGAGTCCGGATAACAATTGGGCAT
TCCGGCTGGCCCAGAATCTGGGCTACAAGGGCGACGAGAAGGATGCGGAT
GTACTAAGCTTTCTTAGTAAGGTTTGCGCACGCCAGATAGCGGCTATTGA
TCAGGACGTTATCAATTTGGACGAGGTGCGA
BO07879.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2505-PA | 1701 | alpha-Est2-RA | 1..915 | 17..931 | 4575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:38:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est2-RB | 2141 | CG2505-RB | 288..1203 | 16..931 | 4580 | 100 | Plus |
alpha-Est2-RA | 1958 | CG2505-RA | 105..1020 | 16..931 | 4580 | 100 | Plus |
alpha-Est1-RA | 2123 | CG1031-RA | 294..925 | 124..755 | 550 | 73.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:38:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7543037..7543504 | 64..531 | 2340 | 100 | Plus |
3R | 32079331 | 3R | 7543890..7544292 | 529..931 | 2015 | 100 | Plus |
3R | 32079331 | 3R | 7546931..7547128 | 755..558 | 405 | 80.3 | Minus |
3R | 32079331 | 3R | 7542849..7542898 | 16..65 | 250 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 15:38:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 586..635 | 611..660 | 115 | 70 | Plus |
BO07879.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:43 Download gff for
BO07879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2505-PA | 1..914 | 17..930 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:27 Download gff for
BO07879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2505-PA | 1..914 | 17..930 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:08:11 Download gff for
BO07879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est2-RA | 105..1019 | 16..930 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:20:06 Download gff for
BO07879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est2-RA | 105..1019 | 16..930 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:20:06 Download gff for
BO07879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7542849..7542896 | 16..63 | 100 | -> | Plus |
3R | 7543037..7543503 | 64..530 | 100 | -> | Plus |
3R | 7543892..7544291 | 531..930 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:08:11 Download gff for
BO07879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3368571..3368618 | 16..63 | 100 | -> | Plus |
arm_3R | 3368759..3369225 | 64..530 | 100 | -> | Plus |
arm_3R | 3369614..3370013 | 531..930 | 100 | | Plus |
BO07879.complete Sequence
1732 bp (1732 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630977
> BO07879.complete
GAAGTTATCAGTCGACATGGAGGTGCAAGTGGGATGGCCAAAGCTGATCA
AGATGGGAGCCCAGTTGGTTGGCCACAAGGTGCAACAGTACCGGCTCTCC
ACGGGTCACACAGTGATTTTGGACACCAAGTACGGACAGGTGCGCGGACT
CCAAAGGAAGACGGTCTACGACAAGGAGCCGTACTTTGCCTTCGAGGGCA
TTCCGTACGCCAAGCCCCCCGTGGGTGACCTCCGATTCAGGGCTCCTCAG
CCACCGGAACCCTGGCAAGGAGTGCTCAACTGCACTACCAATCGATCCAA
GCCCATGCAGAGGAACATGCTCCTGGGAATTGTCGAGGGCAGTGAGGATT
GTTTGCATTTGAACGTTTATGTCAAAGCCTTGAAGTCGGAAAAACCGCTG
CCCGTAATTGTGTGGATTTACGGAGGTGGTTTCCAAAAGGGTGAGGCCTC
CAGGGATATTTACAGTCCGGATTACTTCATGAAGAAGCCAGTGGTATTCG
TCGCTATCAACTACAGGTTGGCAGCACTAGGATTTCTCAGTCTAAAGGAC
CCGAAGCTGGATGTTCCTGGCAATGCGGGACTTAAGGACCAAGTAATGGC
TCTGCGTTGGATAAGTCAGAACATCGCCCACTTCAATGGCGACCCCAACA
ACATCACATTGATGGGAGAAAGTGCAGGATCGGCTTCTGTCCACGTCATG
ATGACCACAGAGCAAACACGTGGTCTCTTCCATAAGGCTATCATGCAATC
GGGATGTGCCCTCAGCGAATGGGTGGAGAGTCCGGATAACAATTGGGCAT
TCCGGCTGGCCCAGAATCTGGGCTACAAGGGCGACGAGAAGGATGCGGAT
GTACTAAGCTTTCTTAGTAAGGTTTGCGCACGCCAGATAGCGGCTATTGA
TCAGGACGTTATCAATTTGGACGAGGTGCGAAGCTTCCTACTATTCGCAT
TTGGTCCTGTGATAGAACCCTACGAAACCGACCACTGTGTGGTGCCCAAA
AGGCACAAGGATCTGTTGTCCGAAGCGTGGGGCAACGACATTCCCGTTAT
TGTCGGTGGAAATTCTTTCGAGGGCTTGTTTTCCTACCAACTAGTAAGAA
AAGATCCTTGGGCCTTGAAAAACTTTCACAACATCCTGCCAAGGGAGGTT
AGAGAAACGAGCAGTCTGGAAGGGCAGGATCTACTGGTGCGGCGACTAAA
GCAACTCTACTTCAACAACGAGATGCAGGAATCGATGGAGATGTTCGAGG
CCCTGAATATATTTTCGCATCGCCAGATTTGGCACGATACGCATCGCTTT
ATTCTCGCCCGTCAATCTTATGCCCCCAAAACGCCCACCTATCTATATCG
TTTTGACTTCGACTCCCCGCACTTCAATCAATTTCGCCGACTGGTGTGCG
GCGATCGGATTCGCGGAGTAGCCCATGCGGATGAACTATCATACCTGTTC
TACAACATCATAGCCTCCAAACTGGATAAGTCATCGATGGAATACAAAAC
CATTGAGAGAATGGTTGGCATGTGGACGTCGTTTGCCTCCAGTGGGAATC
CAAATTGCCCAGAACTGGGATCTGCCAAATGGGAAGCCGTCCAGCTTAAA
GAAAATGCCGTGGAGAAGTGCTTCAACATTAGCCACGATCTTGAGATGCG
AGATTTGCCGGAGTCCGATTGCCTAGCCGTTTGGGATACATTTTATCCCA
GGGAGTCGCTCTTCGCAAGCTTTCTAGACCAT
BO07879.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:29:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est2-RB | 1701 | CG2505-PB | 1..1698 | 17..1714 | 8490 | 100 | Plus |
alpha-Est2-RA | 1701 | CG2505-PA | 1..1698 | 17..1714 | 8490 | 100 | Plus |
alpha-Est1-RA | 1698 | CG1031-PA | 108..739 | 124..755 | 505 | 72 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:29:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est2-RB | 2141 | CG2505-RB | 288..1986 | 16..1714 | 8495 | 100 | Plus |
alpha-Est2-RA | 1958 | CG2505-RA | 105..1803 | 16..1714 | 8495 | 100 | Plus |
alpha-Est1-RA | 2123 | CG1031-RA | 294..925 | 124..755 | 505 | 72 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:29:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7543890..7545075 | 529..1714 | 5930 | 100 | Plus |
3R | 32079331 | 3R | 7543037..7543504 | 64..531 | 2340 | 100 | Plus |
3R | 32079331 | 3R | 7546931..7547128 | 755..558 | 405 | 80.3 | Minus |
3R | 32079331 | 3R | 7542849..7542898 | 16..65 | 250 | 100 | Plus |
3R | 32079331 | 3R | 7546158..7546361 | 1525..1322 | 240 | 74.5 | Minus |
Blast to na_te.dros performed 2014-11-27 13:29:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 586..635 | 611..660 | 115 | 70 | Plus |
BO07879.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:53 Download gff for
BO07879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est2-RA | 1..1701 | 17..1715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:31 Download gff for
BO07879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est2-RA | 106..1809 | 16..1722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:50:04 Download gff for
BO07879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est2-RA | 106..1803 | 17..1716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:53 Download gff for
BO07879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est2-RA | 106..1809 | 16..1722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:32 Download gff for
BO07879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est2-RA | 106..1803 | 17..1716 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:32 Download gff for
BO07879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7542850..7542896 | 17..63 | 100 | -> | Plus |
3R | 7543037..7543503 | 64..530 | 100 | -> | Plus |
3R | 7543892..7545075 | 531..1716 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:50:04 Download gff for
BO07879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3368572..3368618 | 17..63 | 100 | -> | Plus |
arm_3R | 3368759..3369225 | 64..530 | 100 | -> | Plus |
arm_3R | 3369614..3370797 | 531..1716 | 99 | | Plus |
BO07879.pep Sequence
Translation from 16 to 1732
> BO07879.pep
MEVQVGWPKLIKMGAQLVGHKVQQYRLSTGHTVILDTKYGQVRGLQRKTV
YDKEPYFAFEGIPYAKPPVGDLRFRAPQPPEPWQGVLNCTTNRSKPMQRN
MLLGIVEGSEDCLHLNVYVKALKSEKPLPVIVWIYGGGFQKGEASRDIYS
PDYFMKKPVVFVAINYRLAALGFLSLKDPKLDVPGNAGLKDQVMALRWIS
QNIAHFNGDPNNITLMGESAGSASVHVMMTTEQTRGLFHKAIMQSGCALS
EWVESPDNNWAFRLAQNLGYKGDEKDADVLSFLSKVCARQIAAIDQDVIN
LDEVRSFLLFAFGPVIEPYETDHCVVPKRHKDLLSEAWGNDIPVIVGGNS
FEGLFSYQLVRKDPWALKNFHNILPREVRETSSLEGQDLLVRRLKQLYFN
NEMQESMEMFEALNIFSHRQIWHDTHRFILARQSYAPKTPTYLYRFDFDS
PHFNQFRRLVCGDRIRGVAHADELSYLFYNIIASKLDKSSMEYKTIERMV
GMWTSFASSGNPNCPELGSAKWEAVQLKENAVEKCFNISHDLEMRDLPES
DCLAVWDTFYPRESLFASFLDH
BO07879.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:37:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est2-PB | 566 | CG2505-PB | 1..566 | 1..566 | 3018 | 100 | Plus |
alpha-Est2-PA | 566 | CG2505-PA | 1..566 | 1..566 | 3018 | 100 | Plus |
alpha-Est1-PA | 565 | CG1031-PA | 1..565 | 1..566 | 1816 | 59.6 | Plus |
CG6018-PA | 566 | CG6018-PA | 1..566 | 1..566 | 1761 | 56.2 | Plus |
alpha-Est8-PA | 574 | CG1121-PA | 11..574 | 11..566 | 1446 | 48.8 | Plus |