Clone BO07879 Report

Search the DGRC for BO07879

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:78
Well:79
Vector:pDNR-Dual
Associated Gene/Transcriptalpha-Est2-RA
Protein status:BO07879.pep: validated full length
Sequenced Size:1732

Clone Sequence Records

BO07879.3prime Sequence

920 bp (905 high quality bases) assembled on 2006-01-06

> BO07879.3prime
ATGGTCTAGAAAGCTTGCGAAGAGCGACTCCCTGGGATAAAATGTATCCC
AAACGGCTAGGCAATCGGACTCCGGCAAATCTCGCATCTCAAGATCGTGG
CTAATGTTGAAGCACTTCTCCACGGCATTTTCTTTAAGCTGGACGGCTTC
CCATTTGGCAGATCCCAGTTCTGGGCAATTTGGATTCCCACTGGAGGCAA
ACGACGTCCACATGCCAACCATTCTCTCAATGGTTTTGTATTCCATCGAT
GACTTATCCAGTTTGGAGGCTATGATGTTGTAGAACAGGTATGATAGTTC
ATCCGCATGGGCTACTCCGCGAATCCGATCGCCGCACACCAGTCGGCGAA
ATTGATTGAAGTGCGGGGAGTCGAAGTCAAAACGATATAGATAGGTGGGC
GTTTTGGGGGCATAAGATTGACGGGCGAGAATAAAGCGATGCGTATCGTG
CCAAATCTGGCGATGCGAAAATATATTCAGGGCCTCGAACATCTCCATCG
ATTCCTGCATCTCGTTGTTGAAGTAGAGTTGCTTTAGTCGCCGCACCAGT
AGATCCTGCCCTTCCAGACTGCTCGTTTCTCTAACCTCCCTTGGCAGGAT
GTTGTGAAAGTTTTTCAAGGCCCAAGGATCTTTTCTTACTAGTTGGTAGG
AAAACAAGCCCTCGAAAGAATTTCCACCGACAATAACGGGAATGTCGTTG
CCCCACGCTTCGGACAACAGATCCTTGTGCCTTTTGGGCACCACACAGTG
GTCGGTTTCGTAGGGTTCTATCACAGGACCAAATGCGAATAGTAGGAAGC
TTCGCACCTCGTCCAAATTGATAACGTCCTGATCAATAGCCGCTATCTGG
CGTGCGCAAACCTTACTAAGAAAGCTTAGTACATCCGCATCCTTCTCGTC
GCCCTTGTAGCCCAGATTCT

BO07879.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG2505-PA 1701 alpha-Est2-RA 797..1698 920..19 4510 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:24:36
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est2-RB 2141 CG2505-RB 1085..1986 920..19 4510 100 Minus
alpha-Est2-RA 1958 CG2505-RA 902..1803 920..19 4510 100 Minus
alpha-Est1-RA 2123 CG1031-RA 1495..1698 411..208 240 75.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:24:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7544174..7545075 920..19 4510 100 Minus
3R 32079331 3R 7546158..7546361 208..411 240 74.5 Plus
Blast to na_te.dros performed on 2015-02-12 00:24:32 has no hits.

BO07879.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:42 Download gff for BO07879.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2505-PA 797..1701 18..920 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:25 Download gff for BO07879.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2505-PA 797..1701 18..920 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:49:37 Download gff for BO07879.3prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est2-RA 902..1808 11..920 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:48 Download gff for BO07879.3prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est2-RA 902..1808 11..920 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:48 Download gff for BO07879.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7544174..7545080 11..920 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:49:37 Download gff for BO07879.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3369896..3370802 11..920 99   Minus

BO07879.5prime Sequence

931 bp (710 high quality bases) assembled on 2006-01-06

> BO07879.5prime
GAAGTTATCAGTCGACATGGAGGTGCAAGTGGGATGGCCAAAGCTGATCA
AGATGGGAGCCCAGTTGGTTGGCCACAAGGTGCAACAGTACCGGCTCTCC
ACGGGTCACACAGTGATTTTGGACACCAAGTACGGACAGGTGCGCGGACT
CCAAAGGAAGACGGTCTACGACAAGGAGCCGTACTTTGCCTTCGAGGGCA
TTCCGTACGCCAAGCCCCCCGTGGGTGACCTCCGATTCAGGGCTCCTCAG
CCACCGGAACCCTGGCAAGGAGTGCTCAACTGCACTACCAATCGATCCAA
GCCCATGCAGAGGAACATGCTCCTGGGAATTGTCGAGGGCAGTGAGGATT
GTTTGCATTTGAACGTTTATGTCAAAGCCTTGAAGTCGGAAAAACCGCTG
CCCGTAATTGTGTGGATTTACGGAGGTGGTTTCCAAAAGGGTGAGGCCTC
CAGGGATATTTACAGTCCGGATTACTTCATGAAGAAGCCAGTGGTATTCG
TCGCTATCAACTACAGGTTGGCAGCACTAGGATTTCTCAGTCTAAAGGAC
CCGAAGCTGGATGTTCCTGGCAATGCGGGACTTAAGGACCAAGTAATGGC
TCTGCGTTGGATAAGTCAGAACATCGCCCACTTCAATGGCGACCCCAACA
ACATCACATTGATGGGAGAAAGTGCAGGATCGGCTTCTGTCCACGTCATG
ATGACCACAGAGCAAACACGTGGTCTCTTCCATAAGGCTATCATGCAATC
GGGATGTGCCCTCAGCGAATGGGTGGAGAGTCCGGATAACAATTGGGCAT
TCCGGCTGGCCCAGAATCTGGGCTACAAGGGCGACGAGAAGGATGCGGAT
GTACTAAGCTTTCTTAGTAAGGTTTGCGCACGCCAGATAGCGGCTATTGA
TCAGGACGTTATCAATTTGGACGAGGTGCGA

BO07879.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG2505-PA 1701 alpha-Est2-RA 1..915 17..931 4575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est2-RB 2141 CG2505-RB 288..1203 16..931 4580 100 Plus
alpha-Est2-RA 1958 CG2505-RA 105..1020 16..931 4580 100 Plus
alpha-Est1-RA 2123 CG1031-RA 294..925 124..755 550 73.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7543037..7543504 64..531 2340 100 Plus
3R 32079331 3R 7543890..7544292 529..931 2015 100 Plus
3R 32079331 3R 7546931..7547128 755..558 405 80.3 Minus
3R 32079331 3R 7542849..7542898 16..65 250 100 Plus
Blast to na_te.dros performed 2015-02-12 15:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 586..635 611..660 115 70 Plus

BO07879.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:43 Download gff for BO07879.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2505-PA 1..914 17..930 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:27 Download gff for BO07879.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2505-PA 1..914 17..930 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:08:11 Download gff for BO07879.5prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est2-RA 105..1019 16..930 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:20:06 Download gff for BO07879.5prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est2-RA 105..1019 16..930 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:20:06 Download gff for BO07879.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7542849..7542896 16..63 100 -> Plus
3R 7543037..7543503 64..530 100 -> Plus
3R 7543892..7544291 531..930 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:08:11 Download gff for BO07879.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3368571..3368618 16..63 100 -> Plus
arm_3R 3368759..3369225 64..530 100 -> Plus
arm_3R 3369614..3370013 531..930 100   Plus

BO07879.complete Sequence

1732 bp (1732 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ630977

> BO07879.complete
GAAGTTATCAGTCGACATGGAGGTGCAAGTGGGATGGCCAAAGCTGATCA
AGATGGGAGCCCAGTTGGTTGGCCACAAGGTGCAACAGTACCGGCTCTCC
ACGGGTCACACAGTGATTTTGGACACCAAGTACGGACAGGTGCGCGGACT
CCAAAGGAAGACGGTCTACGACAAGGAGCCGTACTTTGCCTTCGAGGGCA
TTCCGTACGCCAAGCCCCCCGTGGGTGACCTCCGATTCAGGGCTCCTCAG
CCACCGGAACCCTGGCAAGGAGTGCTCAACTGCACTACCAATCGATCCAA
GCCCATGCAGAGGAACATGCTCCTGGGAATTGTCGAGGGCAGTGAGGATT
GTTTGCATTTGAACGTTTATGTCAAAGCCTTGAAGTCGGAAAAACCGCTG
CCCGTAATTGTGTGGATTTACGGAGGTGGTTTCCAAAAGGGTGAGGCCTC
CAGGGATATTTACAGTCCGGATTACTTCATGAAGAAGCCAGTGGTATTCG
TCGCTATCAACTACAGGTTGGCAGCACTAGGATTTCTCAGTCTAAAGGAC
CCGAAGCTGGATGTTCCTGGCAATGCGGGACTTAAGGACCAAGTAATGGC
TCTGCGTTGGATAAGTCAGAACATCGCCCACTTCAATGGCGACCCCAACA
ACATCACATTGATGGGAGAAAGTGCAGGATCGGCTTCTGTCCACGTCATG
ATGACCACAGAGCAAACACGTGGTCTCTTCCATAAGGCTATCATGCAATC
GGGATGTGCCCTCAGCGAATGGGTGGAGAGTCCGGATAACAATTGGGCAT
TCCGGCTGGCCCAGAATCTGGGCTACAAGGGCGACGAGAAGGATGCGGAT
GTACTAAGCTTTCTTAGTAAGGTTTGCGCACGCCAGATAGCGGCTATTGA
TCAGGACGTTATCAATTTGGACGAGGTGCGAAGCTTCCTACTATTCGCAT
TTGGTCCTGTGATAGAACCCTACGAAACCGACCACTGTGTGGTGCCCAAA
AGGCACAAGGATCTGTTGTCCGAAGCGTGGGGCAACGACATTCCCGTTAT
TGTCGGTGGAAATTCTTTCGAGGGCTTGTTTTCCTACCAACTAGTAAGAA
AAGATCCTTGGGCCTTGAAAAACTTTCACAACATCCTGCCAAGGGAGGTT
AGAGAAACGAGCAGTCTGGAAGGGCAGGATCTACTGGTGCGGCGACTAAA
GCAACTCTACTTCAACAACGAGATGCAGGAATCGATGGAGATGTTCGAGG
CCCTGAATATATTTTCGCATCGCCAGATTTGGCACGATACGCATCGCTTT
ATTCTCGCCCGTCAATCTTATGCCCCCAAAACGCCCACCTATCTATATCG
TTTTGACTTCGACTCCCCGCACTTCAATCAATTTCGCCGACTGGTGTGCG
GCGATCGGATTCGCGGAGTAGCCCATGCGGATGAACTATCATACCTGTTC
TACAACATCATAGCCTCCAAACTGGATAAGTCATCGATGGAATACAAAAC
CATTGAGAGAATGGTTGGCATGTGGACGTCGTTTGCCTCCAGTGGGAATC
CAAATTGCCCAGAACTGGGATCTGCCAAATGGGAAGCCGTCCAGCTTAAA
GAAAATGCCGTGGAGAAGTGCTTCAACATTAGCCACGATCTTGAGATGCG
AGATTTGCCGGAGTCCGATTGCCTAGCCGTTTGGGATACATTTTATCCCA
GGGAGTCGCTCTTCGCAAGCTTTCTAGACCAT

BO07879.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:29:17
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est2-RB 1701 CG2505-PB 1..1698 17..1714 8490 100 Plus
alpha-Est2-RA 1701 CG2505-PA 1..1698 17..1714 8490 100 Plus
alpha-Est1-RA 1698 CG1031-PA 108..739 124..755 505 72 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est2-RB 2141 CG2505-RB 288..1986 16..1714 8495 100 Plus
alpha-Est2-RA 1958 CG2505-RA 105..1803 16..1714 8495 100 Plus
alpha-Est1-RA 2123 CG1031-RA 294..925 124..755 505 72 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:29:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7543890..7545075 529..1714 5930 100 Plus
3R 32079331 3R 7543037..7543504 64..531 2340 100 Plus
3R 32079331 3R 7546931..7547128 755..558 405 80.3 Minus
3R 32079331 3R 7542849..7542898 16..65 250 100 Plus
3R 32079331 3R 7546158..7546361 1525..1322 240 74.5 Minus
Blast to na_te.dros performed 2014-11-27 13:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 586..635 611..660 115 70 Plus

BO07879.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:53 Download gff for BO07879.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est2-RA 1..1701 17..1715 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:31 Download gff for BO07879.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est2-RA 106..1809 16..1722 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:50:04 Download gff for BO07879.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est2-RA 106..1803 17..1716 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:53 Download gff for BO07879.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est2-RA 106..1809 16..1722 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:32 Download gff for BO07879.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est2-RA 106..1803 17..1716 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:32 Download gff for BO07879.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7542850..7542896 17..63 100 -> Plus
3R 7543037..7543503 64..530 100 -> Plus
3R 7543892..7545075 531..1716 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:50:04 Download gff for BO07879.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3368572..3368618 17..63 100 -> Plus
arm_3R 3368759..3369225 64..530 100 -> Plus
arm_3R 3369614..3370797 531..1716 99   Plus

BO07879.pep Sequence

Translation from 16 to 1732

> BO07879.pep
MEVQVGWPKLIKMGAQLVGHKVQQYRLSTGHTVILDTKYGQVRGLQRKTV
YDKEPYFAFEGIPYAKPPVGDLRFRAPQPPEPWQGVLNCTTNRSKPMQRN
MLLGIVEGSEDCLHLNVYVKALKSEKPLPVIVWIYGGGFQKGEASRDIYS
PDYFMKKPVVFVAINYRLAALGFLSLKDPKLDVPGNAGLKDQVMALRWIS
QNIAHFNGDPNNITLMGESAGSASVHVMMTTEQTRGLFHKAIMQSGCALS
EWVESPDNNWAFRLAQNLGYKGDEKDADVLSFLSKVCARQIAAIDQDVIN
LDEVRSFLLFAFGPVIEPYETDHCVVPKRHKDLLSEAWGNDIPVIVGGNS
FEGLFSYQLVRKDPWALKNFHNILPREVRETSSLEGQDLLVRRLKQLYFN
NEMQESMEMFEALNIFSHRQIWHDTHRFILARQSYAPKTPTYLYRFDFDS
PHFNQFRRLVCGDRIRGVAHADELSYLFYNIIASKLDKSSMEYKTIERMV
GMWTSFASSGNPNCPELGSAKWEAVQLKENAVEKCFNISHDLEMRDLPES
DCLAVWDTFYPRESLFASFLDH

BO07879.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est2-PB 566 CG2505-PB 1..566 1..566 3018 100 Plus
alpha-Est2-PA 566 CG2505-PA 1..566 1..566 3018 100 Plus
alpha-Est1-PA 565 CG1031-PA 1..565 1..566 1816 59.6 Plus
CG6018-PA 566 CG6018-PA 1..566 1..566 1761 56.2 Plus
alpha-Est8-PA 574 CG1121-PA 11..574 11..566 1446 48.8 Plus