Clone Sequence Records
BO07882.3prime Sequence
924 bp (739 high quality bases) assembled on 2006-01-06
> BO07882.3prime
ATGGTCTAGAAAGCTTGCAGAGAGTCCCAGCTGCGGCTTCTCCTTGAAGA
AGTACACCTCGTCACAATCGCAGGCGTGATCCGCTTCCCATTCAAGCAGC
GCTCGCTTAACAATGGGCAGGATGTGCTTTCTGGTGGCCTGGACGTTGTG
TTGGCGCAAGAAGCAGCCGCCCATAAAGCGGGTGTCCACCTCGTGAGGTC
GCAACTCCAATTTTGGATCGTTAGACTCCATCAGTGCTTGCTGGACGCGT
TGAACGAATTGGCCTTGGCCGGAGAGAGAGATCAAGGCCAGGTCACGCTG
CACCTGGCCATCGGCAGGTGATACATACATTCCCAGGATAACCAAAAGGT
TACTCTCCACGCCAAACTCGCGAACGGCTTTTTCGGCGCCGCTTTTCTCC
ACAAAATCTCTGACTAGGATGGGCATTCCAGCTAAGGGAACCACCTGACG
ATCGGTTTGCAAGACCTTCATATCCTTGCGCAAAACTTCGGTGAGAGTTA
GCTTACTAATATCAGCCCTTGCAGCCACTAGCTCATCAAAAAGGCTACTT
CTTTGAGCGTCCTTACGGTTAAGCTCGCTCTCCAACTTCTGTACCATGGC
TTCGTCCTTTGGCCCGTAGCGCTTGGCCGCGGGTGCAAAATTAATTGTGT
CCAGCACGATGGTGGCGTGCAGCAGCTGGGCCACGCTAGTGGATCGGGGT
TGGTCCTCTGCCAAATACCGCTGGGCCACCAGAGTGGCGCANGAACCCAC
CGAGGCATCTATGTCCAGTTGGCAGAGTGTTGGCAGCTGCTTGAAGGATG
GACTGCTGTCCTCCAAGGGCCTGTGATCCAAATTTCAGTAACATTTGGCG
CCAGCGGGCTTACATGGTGGTCCACGAGAATAACGTTCACATCCTGGACC
ACTTCCGGGGAATATCGTCTCGAA
BO07882.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3461-PA | 1218 | pn-RA | 402..1215 | 832..19 | 4026 | 99.7 | Minus |
| CG3461-PA | 1218 | pn-RA | 327..403 | 906..830 | 385 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:48:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pn-RA | 1638 | CG3461-RA | 399..1304 | 922..19 | 4454 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:48:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2181677..2182582 | 922..19 | 4404 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:48:09 has no hits.
BO07882.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 03:31:46 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:31 Download gff for
BO07882.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3461-PA | 310..1218 | 15..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:11:16 Download gff for
BO07882.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pn-RA | 396..1308 | 14..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:21:53 Download gff for
BO07882.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pn-RA | 396..1308 | 14..924 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:21:53 Download gff for
BO07882.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2181674..2182586 | 14..924 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:11:16 Download gff for
BO07882.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2075707..2076619 | 14..924 | 99 | | Minus |
BO07882.5prime Sequence
895 bp (788 high quality bases) assembled on 2006-01-06
> BO07882.5prime
GAAGTTATCAGTCGACATGTGCTTTCTACGATTTTTGGCCCAGGCCAGGG
GCACCTTGGGACGGCATCTGGCGGAGGCCTCACCAGTTGCCTGGGCTGCT
GCTCCCGACGTTTCCGGCCGGAAATTACATCTGGTAATGGGCAACGAATC
GTGTGACTTGGACTCCGCCGTTTCGGCCGTCACTTTGGCTTTTGTCTACG
CGCAGCGTCATCGGGAGCACGACTATGTACCTATACTGAACATTCCTCGC
CGGGACTACCCGTTGAAAACCGAGGTGGGCCACTTGTTTGTGAAATGTGG
GATTGCCGAGCCCGTGTTGCTCTTCCGAGACGATATTCCCCGGGAAGTGG
TCCAGGATGTGAACGTTATTCTCGTGGACCACCATGTAAGCCCGCTGGCG
CCAAATGTTACTGAAATTTTGGATCACAGGCCCTTGGAGGACAGCAGTCC
ATCCTTCAAGCAGCTGCCAACACTCTGCCAACTGGACATAGATGCCTCGG
TGGGTTCCTGCGCCACTCTGGTGGCCCAGCGGTATTTGGCAGAGGACCAA
CCCCGATCCACTAGCGTGGCCCAGCTGCTGCACGCCACCATCGTGCTGGA
CACAATTAATTTTGCACCCGCGGCCAAGCGCTACGGGCCAAAGGACGAAG
CCATGGTACAGAAGTTGGAGAGCGAGCTTAACCGTAAGGACGCTCANAGA
AGTAGCCTTTTTGATGAGCTAGTGGCTGCAAGGGCTGATATTAGTAAGCT
AACTCTCACCGAAGTTTTGCGCAAGGATATGAAGGTCTTGCNAACCGATC
GTCAGGTGGTTCCCTTAGCTGGAATGCCCATCCTAGTCAGAGATTTTGTG
GAGAAAAGCGGCGCCGAAAAAGCCGTTCGCGAGTTTGGCGTGGAG
BO07882.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3461-PA | 1218 | pn-RA | 1..879 | 17..895 | 4332 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:04:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pn-RA | 1638 | CG3461-RA | 90..968 | 17..895 | 4358 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:03:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2181415..2182246 | 64..895 | 4123 | 99.6 | Plus |
| X | 23542271 | X | 2181300..2181347 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:04:02 has no hits.
BO07882.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 03:31:47 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:32 Download gff for
BO07882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3461-PA | 1..879 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:57:29 Download gff for
BO07882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pn-RA | 90..968 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:52:45 Download gff for
BO07882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pn-RA | 90..968 | 17..895 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:52:45 Download gff for
BO07882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2181300..2181347 | 17..64 | 100 | -> | Plus |
| X | 2181416..2182246 | 65..895 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:57:29 Download gff for
BO07882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2075333..2075380 | 17..64 | 100 | -> | Plus |
| arm_X | 2075449..2076279 | 65..895 | 99 | | Plus |
BO07882.complete Sequence
1249 bp (1249 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630978
> BO07882.complete
GAAGTTATCAGTCGACATGTGCTTTCTACGATTTTTGGCCCAGGCCAGGG
GCACCTTGGGACGGCATCTGGCGGAGGCCTCACCAGTTGCCTGGGCTGCT
GCTCCCGACGTTTCCGGCCGGAAATTACATCTGGTAATGGGCAACGAATC
GTGTGACTTGGACTCCGCCGTTTCGGCCGTCACTTTGGCTTTTGTCTACG
CGCAGCGTCATCGGGAGCACGACTATGTACCTATACTGAACATTCCTCGC
CGGGACTACCCGTTGAAAACCGAGGTGGGCCACTTGTTTGTGAAATGTGG
GATTGCCGAGCCCGTGTTGCTCTTCCGAGACGATATTCCCCGGGAAGTGG
TCCAGGATGTGAACGTTATTCTCGTGGACCACCATGTAAGCCCGCTGGCG
CCAAATGTTACTGAAATTTTGGATCACAGGCCCTTGGAGGACAGCAGTCC
ATCCTTCAAGCAGCTGCCAACACTCTGCCAACTGGACATAGATGCCTCGG
TGGGTTCCTGCGCCACTCTGGTGGCCCAGCGGTATTTGGCAGAGGACCAA
CCCCGATCCACTAGCGTGGCCCAGCTGCTGCACGCCACCATCGTGCTGGA
CACAATTAATTTTGCACCCGCGGCCAAGCGCTACGGGCCAAAGGACGAAG
CCATGGTACAGAAGTTGGAGAGCGAGCTTAACCGTAAGGACGCTCAAAGA
AGTAGCCTTTTTGATGAGCTAGTGGCTGCAAGGGCTGATATTAGTAAGCT
AACTCTCACCGAAGTTTTGCGCAAGGATATGAAGGTCTTGCAAACCGATC
GTCAGGTGGTTCCCTTAGCTGGAATGCCCATCCTAGTCAGAGATTTTGTG
GAGAAAAGCGGCGCCGAAAAAGCCGTTCGCGAGTTTGGCGTGGAGAGTAA
CCTTTTGGTTATCCTGGGAATGTATGTATCACCTGCCGATGGCCAGGTGC
AGCGTGACCTGGCCTTGATCTCTCTCTCCGGCCAAGGCCAATTCGTTCAA
CGCGTCCAGCAAGCACTGATGGAGTCTAACGATCCAAAATTGGAGTTGCG
ACCTCACGAGGTGGACACCCGCTTTATGGGCGGCTGCTTCTTGCGCCAAC
ACAACGTCCAGGCCACCAGAAAGCACATCCTGCCCATTGTTAAGCGAGCG
CTGCTTGAATGGGAAGCGGATCACGCCTGCGATTGTGACGAGGTGTACTT
CTTCAAGGAGAAGCCGCAGCTGGGACTCTCTGCAAGCTTTCTAGACCAT
BO07882.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:56:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pn-RA | 1218 | CG3461-PA | 1..1215 | 17..1231 | 6060 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:56:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pn-RA | 1638 | CG3461-RA | 90..1304 | 17..1231 | 6060 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:56:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2181415..2182582 | 64..1231 | 5825 | 99.9 | Plus |
| X | 23542271 | X | 2181300..2181347 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:56:39 has no hits.
BO07882.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:17 Download gff for
BO07882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pn-RA | 1..1218 | 17..1235 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:44 Download gff for
BO07882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pn-RA | 207..1425 | 17..1236 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:42 Download gff for
BO07882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pn-RA | 90..1304 | 17..1233 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:17 Download gff for
BO07882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pn-RA | 207..1425 | 17..1236 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:45 Download gff for
BO07882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pn-RA | 90..1304 | 17..1233 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:45 Download gff for
BO07882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2181300..2181347 | 17..64 | 100 | -> | Plus |
| X | 2181416..2182582 | 65..1233 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:42 Download gff for
BO07882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2075333..2075380 | 17..64 | 100 | -> | Plus |
| arm_X | 2075449..2076615 | 65..1233 | 99 | | Plus |
BO07882.pep Sequence
Translation from 16 to 1249
> BO07882.pep
MCFLRFLAQARGTLGRHLAEASPVAWAAAPDVSGRKLHLVMGNESCDLDS
AVSAVTLAFVYAQRHREHDYVPILNIPRRDYPLKTEVGHLFVKCGIAEPV
LLFRDDIPREVVQDVNVILVDHHVSPLAPNVTEILDHRPLEDSSPSFKQL
PTLCQLDIDASVGSCATLVAQRYLAEDQPRSTSVAQLLHATIVLDTINFA
PAAKRYGPKDEAMVQKLESELNRKDAQRSSLFDELVAARADISKLTLTEV
LRKDMKVLQTDRQVVPLAGMPILVRDFVEKSGAEKAVREFGVESNLLVIL
GMYVSPADGQVQRDLALISLSGQGQFVQRVQQALMESNDPKLELRPHEVD
TRFMGGCFLRQHNVQATRKHILPIVKRALLEWEADHACDCDEVYFFKEKP
QLGLSASFLDH
BO07882.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pn-PA | 405 | CG3461-PA | 1..405 | 1..405 | 2070 | 100 | Plus |
