Clone Sequence Records
BO07883.3prime Sequence
955 bp (863 high quality bases) assembled on 2006-01-06
> BO07883.3prime
ATGGTCTAGAAAGCTTGCGTCTTGTGAATTCTGCCCAAGACTAATCTCCC
CCATTTCGGTACTGGAAAGGCTTGGCGACAAGGTCGTGGACCTGGAGTTG
CAAGCATTCTCATCCAGATTATAGTAATTCACTATTCGCTGTGGTGGTCG
GTTGGAGATGACCTCTACGATTTGATTCACAACCCATTTGGTCAATTTGA
TGACGGCCACGTGTGCCGCAAACTGCAGGATCATGGCTCCAAAGCCCTTG
TAGAGGCCACTAACTCCCTCGGAGACAATCGTTGTCTGATAGCAATCGAC
GACTCCTTGATAGTTTGTTAGAATGGGTACGACATCGTAGCCATTGTCGA
GGTTGTCGATTATAGTTCGTGTTCCCTGCAATTGCAGACGGTGTAGAATC
GTTTCGAACGGGAAGAACATGACCTCAGTGGTTATGATAGCAATAAGGCT
GGCATAGATGTCCGCATTCTGTTGTTCCAGCGTGGTGTCCTGATACTTTC
CACCCTGGCCGTCCTGGGAATTCTTTATACGAAGCCGCATTATGCGTGAG
GACACGCCCCGTATCACGAGATTAAACAGATACTTGGTGATGCCAAAGGA
GACACTTGGCCCGATTAGAGCCCAGGCTGGTAGCATACGGCCCTTTTGCG
GAGAGCTCCAATAAAACAAGCGCAGACTTCCCTCCCGGAATACATCGAAT
AGACCGGGTTTCTCGCTGGCAATATCACTCTGCACCGTTTCGACGAGAGA
AGCTGCATAGAAGGGCACCACCAGGCCGATACTTATGCATTTGAGCAGGA
GATGCTGTCCGAAACGCTTTAGCGTGGTGCGACTATTCACATCCTTGGGC
CAGCTGGTCACCTTCGAGATAAAGTCGTCGATGGCCAGCGTCATGCCGCG
CACCAGTAGGCAGCTGCCCACGCCCTTCCACAGGGTCGTCAGTCCCTGCC
CTCTG
BO07883.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8931-PA | 1266 | CG8931-RA | 332..1263 | 950..19 | 4660 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:48:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8931-RA | 1454 | CG8931-RA | 475..1411 | 955..19 | 4670 | 99.9 | Minus |
CG5755-RA | 1553 | CG5755-RA | 544..1306 | 955..184 | 320 | 70.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:48:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15984593..15985362 | 788..19 | 3850 | 100 | Minus |
X | 23542271 | X | 15984371..15984538 | 955..788 | 825 | 99.4 | Minus |
2L | 23513712 | 2L | 18097111..18097529 | 955..537 | 280 | 71.1 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:48:22 has no hits.
BO07883.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:48 Download gff for
BO07883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8931-PA | 327..1266 | 18..955 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:33 Download gff for
BO07883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8931-PA | 327..1266 | 18..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:11:18 Download gff for
BO07883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8931-RA | 475..1416 | 11..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:21:54 Download gff for
BO07883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8931-RA | 475..1416 | 11..955 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:21:54 Download gff for
BO07883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15984371..15984538 | 788..955 | 99 | -> | Minus |
X | 15984594..15985367 | 11..787 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:11:18 Download gff for
BO07883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15878404..15878571 | 788..955 | 99 | -> | Minus |
arm_X | 15878627..15879400 | 11..787 | 99 | | Minus |
BO07883.5prime Sequence
920 bp (790 high quality bases) assembled on 2006-01-06
> BO07883.5prime
GAAGTTATCAGTCGACATGGCGGGAATGAATGAGTACTCTAGCCTAAAAT
TTCAAGCGGAGTATGAAACGCACGATGATCACCTGGGCAAGGAGCATCGG
ACTGGGGACCGGGATCAACATTTACCCGTGACCTATGGCCCTAGCAAACA
CTTGGGAAGCAGCCTTGAAGAGCGCGAGAAGGCGATTGTGGACGTCGTCG
GCGTACAGTGGGTCTCCCTGGTCACCGAGAACCTGCTTAGCCATCCGTTT
GTGGTGCTGCGCCGCCAGTGCCAGGTGTACAATGCCTCGAGACGCTATCA
TTTGCATCCCTTTCAGCTTCTGCCCAGCATCGTCCACCTGCACAGAAGGC
AGGGACTGACGACCCTGTGGAAGGGCGTGGGCAGCTGCCTACTGGTGCGC
GGCATGACGCTGGCCATCGACGACTTTATCTCGAAGGTGACCAGCTGGCC
CAAGGATGTGAATAGTCGCACCACGCTAAAGCGTTTCGGACAGCATCTCC
TGCTCAAATGCATAAGTATCGGCCTGGTGGTGCCCTTCTATGCAGCTTCT
CTCGTCGAAACGGTGCAGAGTGATATTGCCAGCGAGAAACCCGGTCTATT
CGATGTATTCCGGGAGGGAAGTCTGCGCTTGTTTTATTGGAGCTCTCCGC
AAAAGGGCCGTATGCTACCAGCCTGGGCTCTAATCGGGCCAAGTGTCTCC
TTTGGCATCACCAAGTATCTGTTTAATCTCGTGATACGGGGCGTGTCCTC
ACGCATAATGCGGCTTCGTATAAAGAATTCCCAGGACGGCCAGGGTGGAA
AGTATCAGGACACCACGCTGGAACAACAGAATGCGGACATCTATGCCAGC
CTTATTGCTATCATAACCACTGAGGTCATGTTCTTTCCCGTCGAAACGAT
TCTACACCGTCTGCAATTGC
BO07883.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8931-PA | 1266 | CG8931-RA | 1..904 | 17..920 | 4445 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:03:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8931-RA | 1454 | CG8931-RA | 149..1052 | 17..920 | 4475 | 99.8 | Plus |
CG5755-RA | 1553 | CG5755-RA | 395..962 | 194..761 | 440 | 72.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:03:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15984593..15985003 | 510..920 | 2010 | 99.3 | Plus |
X | 23542271 | X | 15984188..15984538 | 160..510 | 1755 | 100 | Plus |
X | 23542271 | X | 15984014..15984127 | 49..162 | 570 | 100 | Plus |
2L | 23513712 | 2L | 18096962..18097529 | 194..761 | 425 | 71.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:03:31 has no hits.
BO07883.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:48 Download gff for
BO07883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8931-PA | 1..904 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:34 Download gff for
BO07883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8931-PA | 1..904 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:46:46 Download gff for
BO07883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8931-RA | 145..1052 | 10..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:55:11 Download gff for
BO07883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8931-RA | 145..1052 | 10..920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:55:11 Download gff for
BO07883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15984014..15984127 | 49..162 | 100 | -> | Plus |
X | 15984191..15984538 | 163..510 | 100 | -> | Plus |
X | 15984594..15985003 | 511..920 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:46:46 Download gff for
BO07883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15878047..15878160 | 49..162 | 100 | -> | Plus |
arm_X | 15878224..15878571 | 163..510 | 100 | -> | Plus |
arm_X | 15878627..15879036 | 511..920 | 99 | | Plus |
BO07883.complete Sequence
1297 bp (1297 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ638655
> BO07883.complete
GAAGTTATCAGTCGACATGGCGGGAATGAATGAGTACTCTAGCCTAAAAT
TTCAAGCGGAGTATGAAACGCACGATGATCACCTGGGCAAGGAGCATCGG
ACTGGGGACCGGGATCAACATTTACCCGTGACCTATGGCCCTAGCAAACA
CTTGGGAAGCAGCCTTGAAGAGCGCGAGAAGGCGATTGTGGACGTCGTCG
GCGTACAGTGGGTCTCCCTGGTCACCGAGAACCTGCTTAGCCATCCGTTT
GTGGTGCTGCGCCGCCAGTGCCAGGTGTACAATGCCTCGAGACGCTATCA
TTTGCATCCCTTTCAGCTTCTGCCCAGCATCGTCCACCTGCACAGAAGGC
AGGGACTGACGACCCTGTGGAAGGGCGTGGGCAGCTGCCTACTGGTGCGC
GGCATGACGCTGGCCATCGACGACTTTATCTCGAAGGTGACCAGCTGGCC
CAAGGATGTGAATAGTCGCACCACGCTAAAGCGTTTCGGACAGCATCTCC
TGCTCAAATGCATAAGTATCGGCCTGGTGGTGCCCTTCTATGCAGCTTCT
CTCGTCGAAACGGTGCAGAGTGATATTGCCAGCGAGAAACCCGGTCTATT
CGATGTATTCCGGGAGGGAAGTCTGCGCTTGTTTTATTGGAGCTCTCCGC
AAAAGGGCCGTATGCTACCAGCCTGGGCTCTAATCGGGCCAAGTGTCTCC
TTTGGCATCACCAAGTATCTGTTTAATCTCGTGATACGGGGCGTGTCCTC
ACGCATAATGCGGCTTCGTATAAAGAATTCCCAGGACGGCCAGGGTGGAA
AGTATCAGGACACCACGCTGGAACAACAGAATGCGGACATCTATGCCAGC
CTTATTGCTATCATAACCACTGAGGTCATGTTCTTCCCGTTCGAAACGAT
TCTACACCGTCTGCAATTGCAGGGAACACGAACTATAATCGACAACCTCG
ACAATGGCTACGATGTCGTACCCATTCTAACAAACTATCAAGGAGTCGTC
GATTGCTATCAGACAACGATTGTCTCCGAGGGAGTTAGTGGCCTCTACAA
GGGCTTTGGAGCCATGATCCTGCAGTTTGCGGCACACGTGGCCGTCATCA
AATTGACCAAATGGGTTGTGAATCAAATCGTAGAGGTCATCTCCAACCGA
CCACCACAGCGAATAGTGAATTACTATAATCTGGATGAGAATGCTTGCAA
CTCCAGGTCCACGACCTTGTCGCCAAGCCTTTCCAGTACCGAAATGGGGG
AGATTAGTCTTGGGCAGAATTCACAAGACGCAAGCTTTCTAGACCAT
BO07883.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:52:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8931-RA | 1266 | CG8931-PA | 1..1263 | 17..1279 | 6315 | 100 | Plus |
CG5755-RA | 1353 | CG5755-PA | 271..838 | 194..761 | 425 | 71.7 | Plus |
CG5755-RA | 1353 | CG5755-PA | 885..1182 | 817..1114 | 230 | 71.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:52:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8931-RA | 1454 | CG8931-RA | 149..1411 | 17..1279 | 6315 | 100 | Plus |
CG5755-RA | 1553 | CG5755-RA | 395..962 | 194..761 | 425 | 71.7 | Plus |
CG5755-RA | 1553 | CG5755-RA | 1009..1306 | 817..1114 | 230 | 71.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:52:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15984593..15985362 | 510..1279 | 3850 | 100 | Plus |
X | 23542271 | X | 15984188..15984538 | 160..510 | 1755 | 100 | Plus |
X | 23542271 | X | 15984014..15984127 | 49..162 | 570 | 100 | Plus |
2L | 23513712 | 2L | 18096962..18097529 | 194..761 | 425 | 71.7 | Plus |
2L | 23513712 | 2L | 18097576..18097873 | 817..1114 | 230 | 71.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:52:35 has no hits.
BO07883.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:04 Download gff for
BO07883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8931-RA | 1..1266 | 17..1280 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:25 Download gff for
BO07883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8931-RA | 143..1414 | 10..1287 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:46:40 Download gff for
BO07883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8931-RA | 149..1411 | 17..1281 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:04 Download gff for
BO07883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8931-RA | 143..1414 | 10..1287 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:38 Download gff for
BO07883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8931-RA | 149..1411 | 17..1281 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:38 Download gff for
BO07883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15983920..15983951 | 17..48 | 100 | -> | Plus |
X | 15984014..15984127 | 49..162 | 100 | -> | Plus |
X | 15984191..15984538 | 163..510 | 100 | -> | Plus |
X | 15984594..15985362 | 511..1281 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:46:40 Download gff for
BO07883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15877953..15877984 | 17..48 | 100 | -> | Plus |
arm_X | 15878047..15878160 | 49..162 | 100 | -> | Plus |
arm_X | 15878224..15878571 | 163..510 | 100 | -> | Plus |
arm_X | 15878627..15879395 | 511..1281 | 99 | | Plus |
BO07883.pep Sequence
Translation from 16 to 1297
> BO07883.pep
MAGMNEYSSLKFQAEYETHDDHLGKEHRTGDRDQHLPVTYGPSKHLGSSL
EEREKAIVDVVGVQWVSLVTENLLSHPFVVLRRQCQVYNASRRYHLHPFQ
LLPSIVHLHRRQGLTTLWKGVGSCLLVRGMTLAIDDFISKVTSWPKDVNS
RTTLKRFGQHLLLKCISIGLVVPFYAASLVETVQSDIASEKPGLFDVFRE
GSLRLFYWSSPQKGRMLPAWALIGPSVSFGITKYLFNLVIRGVSSRIMRL
RIKNSQDGQGGKYQDTTLEQQNADIYASLIAIITTEVMFFPFETILHRLQ
LQGTRTIIDNLDNGYDVVPILTNYQGVVDCYQTTIVSEGVSGLYKGFGAM
ILQFAAHVAVIKLTKWVVNQIVEVISNRPPQRIVNYYNLDENACNSRSTT
LSPSLSSTEMGEISLGQNSQDASFLDH
BO07883.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8931-PA | 421 | CG8931-PA | 1..421 | 1..421 | 2181 | 100 | Plus |
CG5755-PA | 450 | CG5755-PA | 2..449 | 6..421 | 1285 | 57.8 | Plus |