Clone BO07883 Report

Search the DGRC for BO07883

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:78
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptCG8931-RA
Protein status:BO07883.pep: validated full length
Sequenced Size:1297

Clone Sequence Records

BO07883.3prime Sequence

955 bp (863 high quality bases) assembled on 2006-01-06

> BO07883.3prime
ATGGTCTAGAAAGCTTGCGTCTTGTGAATTCTGCCCAAGACTAATCTCCC
CCATTTCGGTACTGGAAAGGCTTGGCGACAAGGTCGTGGACCTGGAGTTG
CAAGCATTCTCATCCAGATTATAGTAATTCACTATTCGCTGTGGTGGTCG
GTTGGAGATGACCTCTACGATTTGATTCACAACCCATTTGGTCAATTTGA
TGACGGCCACGTGTGCCGCAAACTGCAGGATCATGGCTCCAAAGCCCTTG
TAGAGGCCACTAACTCCCTCGGAGACAATCGTTGTCTGATAGCAATCGAC
GACTCCTTGATAGTTTGTTAGAATGGGTACGACATCGTAGCCATTGTCGA
GGTTGTCGATTATAGTTCGTGTTCCCTGCAATTGCAGACGGTGTAGAATC
GTTTCGAACGGGAAGAACATGACCTCAGTGGTTATGATAGCAATAAGGCT
GGCATAGATGTCCGCATTCTGTTGTTCCAGCGTGGTGTCCTGATACTTTC
CACCCTGGCCGTCCTGGGAATTCTTTATACGAAGCCGCATTATGCGTGAG
GACACGCCCCGTATCACGAGATTAAACAGATACTTGGTGATGCCAAAGGA
GACACTTGGCCCGATTAGAGCCCAGGCTGGTAGCATACGGCCCTTTTGCG
GAGAGCTCCAATAAAACAAGCGCAGACTTCCCTCCCGGAATACATCGAAT
AGACCGGGTTTCTCGCTGGCAATATCACTCTGCACCGTTTCGACGAGAGA
AGCTGCATAGAAGGGCACCACCAGGCCGATACTTATGCATTTGAGCAGGA
GATGCTGTCCGAAACGCTTTAGCGTGGTGCGACTATTCACATCCTTGGGC
CAGCTGGTCACCTTCGAGATAAAGTCGTCGATGGCCAGCGTCATGCCGCG
CACCAGTAGGCAGCTGCCCACGCCCTTCCACAGGGTCGTCAGTCCCTGCC
CTCTG

BO07883.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG8931-PA 1266 CG8931-RA 332..1263 950..19 4660 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:48:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG8931-RA 1454 CG8931-RA 475..1411 955..19 4670 99.9 Minus
CG5755-RA 1553 CG5755-RA 544..1306 955..184 320 70.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:48:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15984593..15985362 788..19 3850 100 Minus
X 23542271 X 15984371..15984538 955..788 825 99.4 Minus
2L 23513712 2L 18097111..18097529 955..537 280 71.1 Minus
Blast to na_te.dros performed on 2015-02-09 19:48:22 has no hits.

BO07883.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:48 Download gff for BO07883.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8931-PA 327..1266 18..955 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:33 Download gff for BO07883.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8931-PA 327..1266 18..955 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:11:18 Download gff for BO07883.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8931-RA 475..1416 11..955 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:21:54 Download gff for BO07883.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8931-RA 475..1416 11..955 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:21:54 Download gff for BO07883.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15984371..15984538 788..955 99 -> Minus
X 15984594..15985367 11..787 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:11:18 Download gff for BO07883.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15878404..15878571 788..955 99 -> Minus
arm_X 15878627..15879400 11..787 99   Minus

BO07883.5prime Sequence

920 bp (790 high quality bases) assembled on 2006-01-06

> BO07883.5prime
GAAGTTATCAGTCGACATGGCGGGAATGAATGAGTACTCTAGCCTAAAAT
TTCAAGCGGAGTATGAAACGCACGATGATCACCTGGGCAAGGAGCATCGG
ACTGGGGACCGGGATCAACATTTACCCGTGACCTATGGCCCTAGCAAACA
CTTGGGAAGCAGCCTTGAAGAGCGCGAGAAGGCGATTGTGGACGTCGTCG
GCGTACAGTGGGTCTCCCTGGTCACCGAGAACCTGCTTAGCCATCCGTTT
GTGGTGCTGCGCCGCCAGTGCCAGGTGTACAATGCCTCGAGACGCTATCA
TTTGCATCCCTTTCAGCTTCTGCCCAGCATCGTCCACCTGCACAGAAGGC
AGGGACTGACGACCCTGTGGAAGGGCGTGGGCAGCTGCCTACTGGTGCGC
GGCATGACGCTGGCCATCGACGACTTTATCTCGAAGGTGACCAGCTGGCC
CAAGGATGTGAATAGTCGCACCACGCTAAAGCGTTTCGGACAGCATCTCC
TGCTCAAATGCATAAGTATCGGCCTGGTGGTGCCCTTCTATGCAGCTTCT
CTCGTCGAAACGGTGCAGAGTGATATTGCCAGCGAGAAACCCGGTCTATT
CGATGTATTCCGGGAGGGAAGTCTGCGCTTGTTTTATTGGAGCTCTCCGC
AAAAGGGCCGTATGCTACCAGCCTGGGCTCTAATCGGGCCAAGTGTCTCC
TTTGGCATCACCAAGTATCTGTTTAATCTCGTGATACGGGGCGTGTCCTC
ACGCATAATGCGGCTTCGTATAAAGAATTCCCAGGACGGCCAGGGTGGAA
AGTATCAGGACACCACGCTGGAACAACAGAATGCGGACATCTATGCCAGC
CTTATTGCTATCATAACCACTGAGGTCATGTTCTTTCCCGTCGAAACGAT
TCTACACCGTCTGCAATTGC

BO07883.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8931-PA 1266 CG8931-RA 1..904 17..920 4445 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG8931-RA 1454 CG8931-RA 149..1052 17..920 4475 99.8 Plus
CG5755-RA 1553 CG5755-RA 395..962 194..761 440 72.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:03:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15984593..15985003 510..920 2010 99.3 Plus
X 23542271 X 15984188..15984538 160..510 1755 100 Plus
X 23542271 X 15984014..15984127 49..162 570 100 Plus
2L 23513712 2L 18096962..18097529 194..761 425 71.7 Plus
Blast to na_te.dros performed on 2015-02-11 22:03:31 has no hits.

BO07883.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:48 Download gff for BO07883.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8931-PA 1..904 17..920 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:34 Download gff for BO07883.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8931-PA 1..904 17..920 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:46:46 Download gff for BO07883.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8931-RA 145..1052 10..920 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:55:11 Download gff for BO07883.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8931-RA 145..1052 10..920 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:55:11 Download gff for BO07883.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15984014..15984127 49..162 100 -> Plus
X 15984191..15984538 163..510 100 -> Plus
X 15984594..15985003 511..920 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:46:46 Download gff for BO07883.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15878047..15878160 49..162 100 -> Plus
arm_X 15878224..15878571 163..510 100 -> Plus
arm_X 15878627..15879036 511..920 99   Plus

BO07883.complete Sequence

1297 bp (1297 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ638655

> BO07883.complete
GAAGTTATCAGTCGACATGGCGGGAATGAATGAGTACTCTAGCCTAAAAT
TTCAAGCGGAGTATGAAACGCACGATGATCACCTGGGCAAGGAGCATCGG
ACTGGGGACCGGGATCAACATTTACCCGTGACCTATGGCCCTAGCAAACA
CTTGGGAAGCAGCCTTGAAGAGCGCGAGAAGGCGATTGTGGACGTCGTCG
GCGTACAGTGGGTCTCCCTGGTCACCGAGAACCTGCTTAGCCATCCGTTT
GTGGTGCTGCGCCGCCAGTGCCAGGTGTACAATGCCTCGAGACGCTATCA
TTTGCATCCCTTTCAGCTTCTGCCCAGCATCGTCCACCTGCACAGAAGGC
AGGGACTGACGACCCTGTGGAAGGGCGTGGGCAGCTGCCTACTGGTGCGC
GGCATGACGCTGGCCATCGACGACTTTATCTCGAAGGTGACCAGCTGGCC
CAAGGATGTGAATAGTCGCACCACGCTAAAGCGTTTCGGACAGCATCTCC
TGCTCAAATGCATAAGTATCGGCCTGGTGGTGCCCTTCTATGCAGCTTCT
CTCGTCGAAACGGTGCAGAGTGATATTGCCAGCGAGAAACCCGGTCTATT
CGATGTATTCCGGGAGGGAAGTCTGCGCTTGTTTTATTGGAGCTCTCCGC
AAAAGGGCCGTATGCTACCAGCCTGGGCTCTAATCGGGCCAAGTGTCTCC
TTTGGCATCACCAAGTATCTGTTTAATCTCGTGATACGGGGCGTGTCCTC
ACGCATAATGCGGCTTCGTATAAAGAATTCCCAGGACGGCCAGGGTGGAA
AGTATCAGGACACCACGCTGGAACAACAGAATGCGGACATCTATGCCAGC
CTTATTGCTATCATAACCACTGAGGTCATGTTCTTCCCGTTCGAAACGAT
TCTACACCGTCTGCAATTGCAGGGAACACGAACTATAATCGACAACCTCG
ACAATGGCTACGATGTCGTACCCATTCTAACAAACTATCAAGGAGTCGTC
GATTGCTATCAGACAACGATTGTCTCCGAGGGAGTTAGTGGCCTCTACAA
GGGCTTTGGAGCCATGATCCTGCAGTTTGCGGCACACGTGGCCGTCATCA
AATTGACCAAATGGGTTGTGAATCAAATCGTAGAGGTCATCTCCAACCGA
CCACCACAGCGAATAGTGAATTACTATAATCTGGATGAGAATGCTTGCAA
CTCCAGGTCCACGACCTTGTCGCCAAGCCTTTCCAGTACCGAAATGGGGG
AGATTAGTCTTGGGCAGAATTCACAAGACGCAAGCTTTCTAGACCAT

BO07883.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8931-RA 1266 CG8931-PA 1..1263 17..1279 6315 100 Plus
CG5755-RA 1353 CG5755-PA 271..838 194..761 425 71.7 Plus
CG5755-RA 1353 CG5755-PA 885..1182 817..1114 230 71.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:52:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG8931-RA 1454 CG8931-RA 149..1411 17..1279 6315 100 Plus
CG5755-RA 1553 CG5755-RA 395..962 194..761 425 71.7 Plus
CG5755-RA 1553 CG5755-RA 1009..1306 817..1114 230 71.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:52:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15984593..15985362 510..1279 3850 100 Plus
X 23542271 X 15984188..15984538 160..510 1755 100 Plus
X 23542271 X 15984014..15984127 49..162 570 100 Plus
2L 23513712 2L 18096962..18097529 194..761 425 71.7 Plus
2L 23513712 2L 18097576..18097873 817..1114 230 71.8 Plus
Blast to na_te.dros performed on 2014-11-26 15:52:35 has no hits.

BO07883.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:04 Download gff for BO07883.complete
Subject Subject Range Query Range Percent Splice Strand
CG8931-RA 1..1266 17..1280 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:25 Download gff for BO07883.complete
Subject Subject Range Query Range Percent Splice Strand
CG8931-RA 143..1414 10..1287 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:46:40 Download gff for BO07883.complete
Subject Subject Range Query Range Percent Splice Strand
CG8931-RA 149..1411 17..1281 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:04 Download gff for BO07883.complete
Subject Subject Range Query Range Percent Splice Strand
CG8931-RA 143..1414 10..1287 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:38 Download gff for BO07883.complete
Subject Subject Range Query Range Percent Splice Strand
CG8931-RA 149..1411 17..1281 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:38 Download gff for BO07883.complete
Subject Subject Range Query Range Percent Splice Strand
X 15983920..15983951 17..48 100 -> Plus
X 15984014..15984127 49..162 100 -> Plus
X 15984191..15984538 163..510 100 -> Plus
X 15984594..15985362 511..1281 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:46:40 Download gff for BO07883.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15877953..15877984 17..48 100 -> Plus
arm_X 15878047..15878160 49..162 100 -> Plus
arm_X 15878224..15878571 163..510 100 -> Plus
arm_X 15878627..15879395 511..1281 99   Plus

BO07883.pep Sequence

Translation from 16 to 1297

> BO07883.pep
MAGMNEYSSLKFQAEYETHDDHLGKEHRTGDRDQHLPVTYGPSKHLGSSL
EEREKAIVDVVGVQWVSLVTENLLSHPFVVLRRQCQVYNASRRYHLHPFQ
LLPSIVHLHRRQGLTTLWKGVGSCLLVRGMTLAIDDFISKVTSWPKDVNS
RTTLKRFGQHLLLKCISIGLVVPFYAASLVETVQSDIASEKPGLFDVFRE
GSLRLFYWSSPQKGRMLPAWALIGPSVSFGITKYLFNLVIRGVSSRIMRL
RIKNSQDGQGGKYQDTTLEQQNADIYASLIAIITTEVMFFPFETILHRLQ
LQGTRTIIDNLDNGYDVVPILTNYQGVVDCYQTTIVSEGVSGLYKGFGAM
ILQFAAHVAVIKLTKWVVNQIVEVISNRPPQRIVNYYNLDENACNSRSTT
LSPSLSSTEMGEISLGQNSQDASFLDH

BO07883.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG8931-PA 421 CG8931-PA 1..421 1..421 2181 100 Plus
CG5755-PA 450 CG5755-PA 2..449 6..421 1285 57.8 Plus