Clone BO07886 Report

Search the DGRC for BO07886

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:78
Well:86
Vector:pDNR-Dual
Associated Gene/Transcriptsxe2-RA
Protein status:BO07886.pep: validated full length
Sequenced Size:1195

Clone Sequence Records

BO07886.3prime Sequence

998 bp (903 high quality bases) assembled on 2006-01-06

> BO07886.3prime
ATGGTCTAGAAAGCTTGCGCCAATTGAACGCCGGTTTGCTGTCTCCCGAA
TAGTGGACGGCCGGGGTCGTTTAATGTGGACCAGCCCATCGCTGGTGCCA
TACGGAGACTGCGGCCGTGTGCTCAGATAAAAGATACCTCTTTTGGGGAC
TGCCGGTTCACCGCCCATGAACTCGTTGCCGGTGCATGTATTGACTGCAT
ATTTTTCGCTGCCTCCGACGTTGCAGTTGCAGGTGGCCGATAGCACCGAT
TTCGCTGAGCTGCAGCGCAATGCGGCAAATGATTTCGGTTGCCGGACTGA
CTCGGCAAAGTAGAACATGGCCGCGAAGTGGTCGCAGACAAAATCAAACT
CCGTGGCCGTGGCGTTGGGACAATGTGGCTGCCCGAGGCCCCAGTTGGCA
AAGAAGGAGGCATGACTGAGCTTAGTACTCGGATTGCCGAGCAGCGTTAG
ATCCGTGTGAATTGACTCCACATACAGGGCATCGTTGACGTCCAGCCTCT
CTTCGGGTCCCAGGCTGAGTTGAGTGAGACCAGCGGGATCCAAGGCGAAA
ATAGCACCAAGGCGATGCGGCCTTAACAGCTTTCCAGTCAATCCAGAGAT
GTGACTGCCGGCGCTGTGCCCAATCATATAGATTTGCTCGTAGGGAACTC
CTGTGTTGTCATGAAGAAACCGCAACATTTTGGCCACATTGGCAGCTATC
GACGGAAGCTGCTTAGACACACGTGGATAGCTGATGTCCAACGACTGGCG
ACTCCAGTCCAGAATTATGACGTTGTAATTGCCCCGGGACAGGTAGGCAT
CCTTGATGGCAGCATTCGAGCANGTGACACTCTTTCCCGCCCAGCCATGA
ATGGAGACCCTAACTGGCCATTTCGGATTGAAGTGCGAGTTCCTTAGCAT
GGTCAGATCTCCTGGTCGCAGCAGTTGACGCTCCTCCGGATTGAGGGGCG
TATAAAGATCGTACCGCAGCACCTTTGTTTGCGAAAGACGGGGGCCTC

BO07886.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4979-PA 1164 sxe2-RA 187..1161 993..19 4806 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
sxe2-RB 1627 CG4979-RB 459..1433 993..19 4834 99.7 Minus
sxe2-RA 1583 CG4979-RA 415..1389 993..19 4834 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16086184..16087028 863..19 4214 99.9 Minus
3R 32079331 3R 16085988..16086122 993..859 645 98.5 Minus
Blast to na_te.dros performed on 2015-02-04 20:32:35 has no hits.

BO07886.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:51 Download gff for BO07886.3prime
Subject Subject Range Query Range Percent Splice Strand
sxe2-PA 182..1164 18..998 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:40 Download gff for BO07886.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4979-PA 182..1164 18..998 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:26:41 Download gff for BO07886.3prime
Subject Subject Range Query Range Percent Splice Strand
sxe2-RA 410..1389 19..998 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:51:12 Download gff for BO07886.3prime
Subject Subject Range Query Range Percent Splice Strand
sxe2-RA 410..1389 19..998 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:51:12 Download gff for BO07886.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16085983..16086121 860..998 97 -> Minus
3R 16086188..16087028 19..859 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:26:41 Download gff for BO07886.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11911705..11911843 860..998 97 -> Minus
arm_3R 11911910..11912750 19..859 99   Minus

BO07886.5prime Sequence

934 bp (820 high quality bases) assembled on 2006-01-06

> BO07886.5prime
GAAGTTATCAGTCGACATGGGCTCGTTAACGGGAATGCATATATCACACT
GGTTGCTGTGGACGTGCCTGCTGCTCCTTGGCGCAGCGGGAACGGATGCG
TCAGTTGACTACTTTGCCTATGCTCCCGGTAAGTGCGAAGTGTCCATTTC
GGATGTAATCCAAGGCATGATTACCACTGAGGCTGGCGTCATCCTCGGAA
GGCCCCGTCCTTCGCAAACAAAGCTGCTGCGGTACGATCTTTATACGCCC
CTCAATCCGGAGGAGCGTCAACTGCTGCGACCAGGAGATCTGACCATGCT
AAGGAACTCGCACTTCAATCCGAAATGGCCAGTTAGGGTCTCCATTCATG
GCTGGGCGGGAAAGAGTGTCACCTGCTCGAATGCTGCCATCAAGGATGCC
TACCTGTCCCGGGGCAATTACAACGTCATAATTCTGGACTGGAGTCGCCA
GTCGTTGGACATCAGCTATCCACGTGTGTCTAAGCAGCTTCCGTCGATAG
CTGCCAATGTGGCCAAAATGTTGCGGTTTCTTCATGACAACACAGGAGTT
CCCTACGAGCAAATCTATATGATTGGGCACAGCGCCGGCAGTCACATCTC
TGGATTGACTGGAAAGCTGTTAAGGCCGCATCGCCTTGGTGCTATTTTCG
CCTTGGATCCCGCTGGTCTCACTCAACTCAGCCTGGGACCCGAAGAGAGG
CTGGACGTCAACGATGCCCTGTATGTGGAGTCAATTCACACGGATCTAAC
GCTGCTCGGCAATCCGAGTACTAAGCTCAGTCATGCCTCCTTCTTTGCCA
ACTGGGGCCTCGGGCAGCCACATTTGTCCAACGCCACGGCCACGGAGTTT
GATTTTGTCTGCGACCACTTTCGCGCCATGTTCTACTTTGCCGAGTCAGT
CCGGCAACCGAAATCATTTGCCGCATTGCGCTGC

BO07886.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4979-PA 1164 sxe2-RA 1..808 17..824 4040 100 Plus
CG4979-PA 1164 sxe2-RA 859..918 875..934 300 100 Plus
CG4979-PA 1164 sxe2-RA 812..854 828..870 215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
sxe2-RB 1627 CG4979-RB 273..1190 17..934 4500 99.6 Plus
sxe2-RA 1583 CG4979-RA 229..1146 17..934 4500 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16086184..16086785 333..934 2905 98.8 Plus
3R 32079331 3R 16085878..16086122 93..337 1225 100 Plus
3R 32079331 3R 16085733..16085808 17..92 380 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:43:51 has no hits.

BO07886.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:52 Download gff for BO07886.5prime
Subject Subject Range Query Range Percent Splice Strand
sxe2-PA 1..918 17..934 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:41 Download gff for BO07886.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4979-PA 1..918 17..934 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:44:59 Download gff for BO07886.5prime
Subject Subject Range Query Range Percent Splice Strand
sxe2-RA 225..1146 11..934 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:25:15 Download gff for BO07886.5prime
Subject Subject Range Query Range Percent Splice Strand
sxe2-RA 225..1146 11..934 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:25:15 Download gff for BO07886.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16085729..16085808 11..92 95 -> Plus
3R 16085878..16086121 93..336 100 -> Plus
3R 16086188..16086785 337..934 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:44:59 Download gff for BO07886.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11911451..11911530 11..92 95 -> Plus
arm_3R 11911600..11911843 93..336 100 -> Plus
arm_3R 11911910..11912507 337..934 99   Plus

BO07886.complete Sequence

1195 bp (1195 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630979

> BO07886.complete
GAAGTTATCAGTCGACATGGGCTCGTTAACGGGAATGCATATATCACACT
GGTTGCTGTGGACGTGCCTGCTGCTCCTTGGCGCAGCGGGAACGGATGCG
TCAGTTGACTACTTTGCCTATGCTCCCGGTAAGTGCGAAGTGTCCATTTC
GGATGTAATCCAAGGCATGATTACCACTGAGGCTGGCGTCATCCTCGGAA
GGCCCCGTCCTTCGCAAACAAAGCTGCTGCGGTACGATCTTTATACGCCC
CTCAATCCGGAGGAGCGTCAACTGCTGCGACCAGGAGATCTGACCATGCT
AAGGAACTCGCACTTCAATCCGAAATGGCCAGTTAGGGTCTCCATTCATG
GCTGGGCGGGAAAGAGTGTCACCTGCTCGAATGCTGCCATCAAGGATGCC
TACCTGTCCCGGGGCAATTACAACGTCATAATTCTGGACTGGAGTCGCCA
GTCGTTGGACATCAGCTATCCACGTGTGTCTAAGCAGCTTCCGTCGATAG
CTGCCAATGTGGCCAAAATGTTGCGGTTTCTTCATGACAACACAGGAGTT
CCCTACGAGCAAATCTATATGATTGGGCACAGCGCCGGCAGTCACATCTC
TGGATTGACTGGAAAGCTGTTAAGGCCGCATCGCCTTGGTGCTATTTTCG
CCTTGGATCCCGCTGGTCTCACTCAACTCAGCCTGGGACCCGAAGAGAGG
CTGGACGTCAACGATGCCCTGTATGTGGAGTCAATTCACACGGATCTAAC
GCTGCTCGGCAATCCGAGTACTAAGCTCAGTCATGCCTCCTTCTTTGCCA
ACTGGGGCCTCGGGCAGCCACATTGTCCCAACGCCACGGCCACGGAGTTT
GATTTTGTCTGCGACCACTTCGCGGCCATGTTCTACTTTGCCGAGTCAGT
CCGGCAACCGAAATCATTTGCCGCATTGCGCTGCAGCTCAGCGAAATCGG
TGCTATCGGCCACCTGCAACTGCAACGTCGGAGGCAGCGAAAAATATGCA
GTCAATACATGCACCGGCAACGAGTTCATGGGCGGTGAACCGGCAGTCCC
CAAAAGAGGTATCTTTTATCTGAGCACACGGCCGCAGTCTCCGTATGGCA
CCAGCGATGGGCTGGTCCACATTAAACGACCCCGGCCGTCCACTATTCGG
GAGACAGCAAACCGGCGTTCAATTGGCGCAAGCTTTCTAGACCAT

BO07886.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:58:09
Subject Length Description Subject Range Query Range Score Percent Strand
sxe2-RB 1164 CG4979-PB 1..1161 17..1177 5805 100 Plus
sxe2-RA 1164 CG4979-PA 1..1161 17..1177 5805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:58:11
Subject Length Description Subject Range Query Range Score Percent Strand
sxe2-RB 1627 CG4979-RB 273..1433 17..1177 5805 100 Plus
sxe2-RA 1583 CG4979-RA 229..1389 17..1177 5805 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16086184..16087028 333..1177 4225 100 Plus
3R 32079331 3R 16085878..16086122 93..337 1225 100 Plus
3R 32079331 3R 16085733..16085808 17..92 380 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:58:08 has no hits.

BO07886.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:05 Download gff for BO07886.complete
Subject Subject Range Query Range Percent Splice Strand
sxe2-RA 1..1164 17..1178 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:42 Download gff for BO07886.complete
Subject Subject Range Query Range Percent Splice Strand
sxe2-RA 225..1389 11..1177 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:10 Download gff for BO07886.complete
Subject Subject Range Query Range Percent Splice Strand
sxe2-RA 229..1389 17..1179 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:05 Download gff for BO07886.complete
Subject Subject Range Query Range Percent Splice Strand
sxe2-RA 225..1389 11..1177 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:35:11 Download gff for BO07886.complete
Subject Subject Range Query Range Percent Splice Strand
sxe2-RA 229..1389 17..1179 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:35:11 Download gff for BO07886.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16085733..16085808 17..92 100 -> Plus
3R 16085878..16086121 93..336 100 -> Plus
3R 16086188..16087028 337..1179 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:10 Download gff for BO07886.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11911455..11911530 17..92 100 -> Plus
arm_3R 11911600..11911843 93..336 100 -> Plus
arm_3R 11911910..11912750 337..1179 99   Plus

BO07886.pep Sequence

Translation from 16 to 1195

> BO07886.pep
MGSLTGMHISHWLLWTCLLLLGAAGTDASVDYFAYAPGKCEVSISDVIQG
MITTEAGVILGRPRPSQTKLLRYDLYTPLNPEERQLLRPGDLTMLRNSHF
NPKWPVRVSIHGWAGKSVTCSNAAIKDAYLSRGNYNVIILDWSRQSLDIS
YPRVSKQLPSIAANVAKMLRFLHDNTGVPYEQIYMIGHSAGSHISGLTGK
LLRPHRLGAIFALDPAGLTQLSLGPEERLDVNDALYVESIHTDLTLLGNP
STKLSHASFFANWGLGQPHCPNATATEFDFVCDHFAAMFYFAESVRQPKS
FAALRCSSAKSVLSATCNCNVGGSEKYAVNTCTGNEFMGGEPAVPKRGIF
YLSTRPQSPYGTSDGLVHIKRPRPSTIRETANRRSIGASFLDH

BO07886.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:03
Subject Length Description Subject Range Query Range Score Percent Strand
sxe2-PB 387 CG4979-PB 1..387 1..387 2052 100 Plus
sxe2-PA 387 CG4979-PA 1..387 1..387 2052 100 Plus
CG4267-PB 374 CG4267-PB 91..351 90..360 414 33.2 Plus
CG4267-PA 374 CG4267-PA 91..351 90..360 414 33.2 Plus
CG6675-PC 386 CG6675-PC 139..381 96..360 406 35.5 Plus