Clone Sequence Records
BO07886.3prime Sequence
998 bp (903 high quality bases) assembled on 2006-01-06
> BO07886.3prime
ATGGTCTAGAAAGCTTGCGCCAATTGAACGCCGGTTTGCTGTCTCCCGAA
TAGTGGACGGCCGGGGTCGTTTAATGTGGACCAGCCCATCGCTGGTGCCA
TACGGAGACTGCGGCCGTGTGCTCAGATAAAAGATACCTCTTTTGGGGAC
TGCCGGTTCACCGCCCATGAACTCGTTGCCGGTGCATGTATTGACTGCAT
ATTTTTCGCTGCCTCCGACGTTGCAGTTGCAGGTGGCCGATAGCACCGAT
TTCGCTGAGCTGCAGCGCAATGCGGCAAATGATTTCGGTTGCCGGACTGA
CTCGGCAAAGTAGAACATGGCCGCGAAGTGGTCGCAGACAAAATCAAACT
CCGTGGCCGTGGCGTTGGGACAATGTGGCTGCCCGAGGCCCCAGTTGGCA
AAGAAGGAGGCATGACTGAGCTTAGTACTCGGATTGCCGAGCAGCGTTAG
ATCCGTGTGAATTGACTCCACATACAGGGCATCGTTGACGTCCAGCCTCT
CTTCGGGTCCCAGGCTGAGTTGAGTGAGACCAGCGGGATCCAAGGCGAAA
ATAGCACCAAGGCGATGCGGCCTTAACAGCTTTCCAGTCAATCCAGAGAT
GTGACTGCCGGCGCTGTGCCCAATCATATAGATTTGCTCGTAGGGAACTC
CTGTGTTGTCATGAAGAAACCGCAACATTTTGGCCACATTGGCAGCTATC
GACGGAAGCTGCTTAGACACACGTGGATAGCTGATGTCCAACGACTGGCG
ACTCCAGTCCAGAATTATGACGTTGTAATTGCCCCGGGACAGGTAGGCAT
CCTTGATGGCAGCATTCGAGCANGTGACACTCTTTCCCGCCCAGCCATGA
ATGGAGACCCTAACTGGCCATTTCGGATTGAAGTGCGAGTTCCTTAGCAT
GGTCAGATCTCCTGGTCGCAGCAGTTGACGCTCCTCCGGATTGAGGGGCG
TATAAAGATCGTACCGCAGCACCTTTGTTTGCGAAAGACGGGGGCCTC
BO07886.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4979-PA | 1164 | sxe2-RA | 187..1161 | 993..19 | 4806 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:32:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sxe2-RB | 1627 | CG4979-RB | 459..1433 | 993..19 | 4834 | 99.7 | Minus |
sxe2-RA | 1583 | CG4979-RA | 415..1389 | 993..19 | 4834 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:32:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16086184..16087028 | 863..19 | 4214 | 99.9 | Minus |
3R | 32079331 | 3R | 16085988..16086122 | 993..859 | 645 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-04 20:32:35 has no hits.
BO07886.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:51 Download gff for
BO07886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sxe2-PA | 182..1164 | 18..998 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:40 Download gff for
BO07886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4979-PA | 182..1164 | 18..998 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:26:41 Download gff for
BO07886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sxe2-RA | 410..1389 | 19..998 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:51:12 Download gff for
BO07886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sxe2-RA | 410..1389 | 19..998 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:51:12 Download gff for
BO07886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16085983..16086121 | 860..998 | 97 | -> | Minus |
3R | 16086188..16087028 | 19..859 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:26:41 Download gff for
BO07886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11911705..11911843 | 860..998 | 97 | -> | Minus |
arm_3R | 11911910..11912750 | 19..859 | 99 | | Minus |
BO07886.5prime Sequence
934 bp (820 high quality bases) assembled on 2006-01-06
> BO07886.5prime
GAAGTTATCAGTCGACATGGGCTCGTTAACGGGAATGCATATATCACACT
GGTTGCTGTGGACGTGCCTGCTGCTCCTTGGCGCAGCGGGAACGGATGCG
TCAGTTGACTACTTTGCCTATGCTCCCGGTAAGTGCGAAGTGTCCATTTC
GGATGTAATCCAAGGCATGATTACCACTGAGGCTGGCGTCATCCTCGGAA
GGCCCCGTCCTTCGCAAACAAAGCTGCTGCGGTACGATCTTTATACGCCC
CTCAATCCGGAGGAGCGTCAACTGCTGCGACCAGGAGATCTGACCATGCT
AAGGAACTCGCACTTCAATCCGAAATGGCCAGTTAGGGTCTCCATTCATG
GCTGGGCGGGAAAGAGTGTCACCTGCTCGAATGCTGCCATCAAGGATGCC
TACCTGTCCCGGGGCAATTACAACGTCATAATTCTGGACTGGAGTCGCCA
GTCGTTGGACATCAGCTATCCACGTGTGTCTAAGCAGCTTCCGTCGATAG
CTGCCAATGTGGCCAAAATGTTGCGGTTTCTTCATGACAACACAGGAGTT
CCCTACGAGCAAATCTATATGATTGGGCACAGCGCCGGCAGTCACATCTC
TGGATTGACTGGAAAGCTGTTAAGGCCGCATCGCCTTGGTGCTATTTTCG
CCTTGGATCCCGCTGGTCTCACTCAACTCAGCCTGGGACCCGAAGAGAGG
CTGGACGTCAACGATGCCCTGTATGTGGAGTCAATTCACACGGATCTAAC
GCTGCTCGGCAATCCGAGTACTAAGCTCAGTCATGCCTCCTTCTTTGCCA
ACTGGGGCCTCGGGCAGCCACATTTGTCCAACGCCACGGCCACGGAGTTT
GATTTTGTCTGCGACCACTTTCGCGCCATGTTCTACTTTGCCGAGTCAGT
CCGGCAACCGAAATCATTTGCCGCATTGCGCTGC
BO07886.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4979-PA | 1164 | sxe2-RA | 1..808 | 17..824 | 4040 | 100 | Plus |
CG4979-PA | 1164 | sxe2-RA | 859..918 | 875..934 | 300 | 100 | Plus |
CG4979-PA | 1164 | sxe2-RA | 812..854 | 828..870 | 215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:43:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sxe2-RB | 1627 | CG4979-RB | 273..1190 | 17..934 | 4500 | 99.6 | Plus |
sxe2-RA | 1583 | CG4979-RA | 229..1146 | 17..934 | 4500 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:43:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16086184..16086785 | 333..934 | 2905 | 98.8 | Plus |
3R | 32079331 | 3R | 16085878..16086122 | 93..337 | 1225 | 100 | Plus |
3R | 32079331 | 3R | 16085733..16085808 | 17..92 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:43:51 has no hits.
BO07886.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:52 Download gff for
BO07886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sxe2-PA | 1..918 | 17..934 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:41 Download gff for
BO07886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4979-PA | 1..918 | 17..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:44:59 Download gff for
BO07886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sxe2-RA | 225..1146 | 11..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:25:15 Download gff for
BO07886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sxe2-RA | 225..1146 | 11..934 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:25:15 Download gff for
BO07886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16085729..16085808 | 11..92 | 95 | -> | Plus |
3R | 16085878..16086121 | 93..336 | 100 | -> | Plus |
3R | 16086188..16086785 | 337..934 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:44:59 Download gff for
BO07886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11911451..11911530 | 11..92 | 95 | -> | Plus |
arm_3R | 11911600..11911843 | 93..336 | 100 | -> | Plus |
arm_3R | 11911910..11912507 | 337..934 | 99 | | Plus |
BO07886.complete Sequence
1195 bp (1195 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630979
> BO07886.complete
GAAGTTATCAGTCGACATGGGCTCGTTAACGGGAATGCATATATCACACT
GGTTGCTGTGGACGTGCCTGCTGCTCCTTGGCGCAGCGGGAACGGATGCG
TCAGTTGACTACTTTGCCTATGCTCCCGGTAAGTGCGAAGTGTCCATTTC
GGATGTAATCCAAGGCATGATTACCACTGAGGCTGGCGTCATCCTCGGAA
GGCCCCGTCCTTCGCAAACAAAGCTGCTGCGGTACGATCTTTATACGCCC
CTCAATCCGGAGGAGCGTCAACTGCTGCGACCAGGAGATCTGACCATGCT
AAGGAACTCGCACTTCAATCCGAAATGGCCAGTTAGGGTCTCCATTCATG
GCTGGGCGGGAAAGAGTGTCACCTGCTCGAATGCTGCCATCAAGGATGCC
TACCTGTCCCGGGGCAATTACAACGTCATAATTCTGGACTGGAGTCGCCA
GTCGTTGGACATCAGCTATCCACGTGTGTCTAAGCAGCTTCCGTCGATAG
CTGCCAATGTGGCCAAAATGTTGCGGTTTCTTCATGACAACACAGGAGTT
CCCTACGAGCAAATCTATATGATTGGGCACAGCGCCGGCAGTCACATCTC
TGGATTGACTGGAAAGCTGTTAAGGCCGCATCGCCTTGGTGCTATTTTCG
CCTTGGATCCCGCTGGTCTCACTCAACTCAGCCTGGGACCCGAAGAGAGG
CTGGACGTCAACGATGCCCTGTATGTGGAGTCAATTCACACGGATCTAAC
GCTGCTCGGCAATCCGAGTACTAAGCTCAGTCATGCCTCCTTCTTTGCCA
ACTGGGGCCTCGGGCAGCCACATTGTCCCAACGCCACGGCCACGGAGTTT
GATTTTGTCTGCGACCACTTCGCGGCCATGTTCTACTTTGCCGAGTCAGT
CCGGCAACCGAAATCATTTGCCGCATTGCGCTGCAGCTCAGCGAAATCGG
TGCTATCGGCCACCTGCAACTGCAACGTCGGAGGCAGCGAAAAATATGCA
GTCAATACATGCACCGGCAACGAGTTCATGGGCGGTGAACCGGCAGTCCC
CAAAAGAGGTATCTTTTATCTGAGCACACGGCCGCAGTCTCCGTATGGCA
CCAGCGATGGGCTGGTCCACATTAAACGACCCCGGCCGTCCACTATTCGG
GAGACAGCAAACCGGCGTTCAATTGGCGCAAGCTTTCTAGACCAT
BO07886.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:58:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sxe2-RB | 1164 | CG4979-PB | 1..1161 | 17..1177 | 5805 | 100 | Plus |
sxe2-RA | 1164 | CG4979-PA | 1..1161 | 17..1177 | 5805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:58:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sxe2-RB | 1627 | CG4979-RB | 273..1433 | 17..1177 | 5805 | 100 | Plus |
sxe2-RA | 1583 | CG4979-RA | 229..1389 | 17..1177 | 5805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:58:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16086184..16087028 | 333..1177 | 4225 | 100 | Plus |
3R | 32079331 | 3R | 16085878..16086122 | 93..337 | 1225 | 100 | Plus |
3R | 32079331 | 3R | 16085733..16085808 | 17..92 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:58:08 has no hits.
BO07886.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:05 Download gff for
BO07886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sxe2-RA | 1..1164 | 17..1178 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:42 Download gff for
BO07886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sxe2-RA | 225..1389 | 11..1177 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:10 Download gff for
BO07886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sxe2-RA | 229..1389 | 17..1179 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:05 Download gff for
BO07886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sxe2-RA | 225..1389 | 11..1177 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:35:11 Download gff for
BO07886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sxe2-RA | 229..1389 | 17..1179 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:35:11 Download gff for
BO07886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16085733..16085808 | 17..92 | 100 | -> | Plus |
3R | 16085878..16086121 | 93..336 | 100 | -> | Plus |
3R | 16086188..16087028 | 337..1179 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:10 Download gff for
BO07886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11911455..11911530 | 17..92 | 100 | -> | Plus |
arm_3R | 11911600..11911843 | 93..336 | 100 | -> | Plus |
arm_3R | 11911910..11912750 | 337..1179 | 99 | | Plus |
BO07886.pep Sequence
Translation from 16 to 1195
> BO07886.pep
MGSLTGMHISHWLLWTCLLLLGAAGTDASVDYFAYAPGKCEVSISDVIQG
MITTEAGVILGRPRPSQTKLLRYDLYTPLNPEERQLLRPGDLTMLRNSHF
NPKWPVRVSIHGWAGKSVTCSNAAIKDAYLSRGNYNVIILDWSRQSLDIS
YPRVSKQLPSIAANVAKMLRFLHDNTGVPYEQIYMIGHSAGSHISGLTGK
LLRPHRLGAIFALDPAGLTQLSLGPEERLDVNDALYVESIHTDLTLLGNP
STKLSHASFFANWGLGQPHCPNATATEFDFVCDHFAAMFYFAESVRQPKS
FAALRCSSAKSVLSATCNCNVGGSEKYAVNTCTGNEFMGGEPAVPKRGIF
YLSTRPQSPYGTSDGLVHIKRPRPSTIRETANRRSIGASFLDH
BO07886.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sxe2-PB | 387 | CG4979-PB | 1..387 | 1..387 | 2052 | 100 | Plus |
sxe2-PA | 387 | CG4979-PA | 1..387 | 1..387 | 2052 | 100 | Plus |
CG4267-PB | 374 | CG4267-PB | 91..351 | 90..360 | 414 | 33.2 | Plus |
CG4267-PA | 374 | CG4267-PA | 91..351 | 90..360 | 414 | 33.2 | Plus |
CG6675-PC | 386 | CG6675-PC | 139..381 | 96..360 | 406 | 35.5 | Plus |