Clone Sequence Records
BO07890.3prime Sequence
929 bp (857 high quality bases) assembled on 2006-01-06
> BO07890.3prime
ATGGTCTAGAAAGCTTGCGTCGAGTAACTTGGCCACAATCGGATCCGGTG
CGGTCATGGCATAGCCCAACTGGTTCAGAGCCCTCCGGATCTCGATGAAC
ACGCTGGCATCATCGATAGTCGCCGGCAGGACAACGCGCTCATTGCGGGC
AAAGTCCGCCATCGCCTTGCGCATCGTCTTACCGGATCGAGTGCGTGGCA
GGTTGTTGACGGACGTGACCAGCCGGAAGGCGGCTATGGGGCCTACGACG
TCGCGGATCAGCTTGATGATCTCCGTCGACAGCTTGGCATCGGTCTTCTT
GCAGTTCTCCACCGGAATGTACAGGCACAGTGGTACCTGTCCCTTGGTGG
CCTCGGGCACCCCGAAAACGGCCACGTCCACGACGTCCGGATGCCGAAGC
ACGGCGTCTTCCAGGCTAGAGGTGGACAAGCGATGGCCAGCCACATTGAT
TACATCATCGTCGCGAGCTGTCACAAAGATATAGCCACGTTCGTCCTTGT
AGCCCGCATCCATTGTATCATAGTAACCCGGAAACTTTTGAAAGTAAAGC
GTGCGGAAGAGCTCTTCGTTTTTGTAAAGAGTGGCCATGTTTCCGGGTGG
CAGTGGTAGCTTAAGAGCAATCCTGCCCAGCTCCGAGGTCTGCGCCTCGC
TGCCGTCCGCTTTCAGGATCTTGACGTCGTAGCCCATGAGTGGCAAGCCA
GTGGAGTAAGTGGGCGGACTGAGGTTCTGCTGGAAGCCCAGGCATGTGGC
GGTGACCGCGGAACCAGTCTCCGTCTGCCACCAGTGGTTGAGCACGGGCA
CCTTGAAGGTCTTCTCGATCCAGGACTTGGTCTCGTAGTCGCAGTGCTCG
CCGGCAATGAAGATGGCACGCAGCGACTTCATGGAGTACTGTCGCCCATA
GCTGATGTCCGGATCAGCACGACGGATAA
BO07890.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6432-PA | 2025 | CG6432-RA | 1112..2022 | 929..19 | 4555 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:27:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6432-RB | 2715 | CG6432-RB | 1224..2134 | 929..19 | 4555 | 100 | Minus |
| CG6432-RA | 2267 | CG6432-RA | 1224..2134 | 929..19 | 4555 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:27:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24339554..24340064 | 529..19 | 2555 | 100 | Minus |
| 3R | 32079331 | 3R | 24338977..24339231 | 929..675 | 1275 | 100 | Minus |
| 3R | 32079331 | 3R | 24339295..24339442 | 675..528 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:27:30 has no hits.
BO07890.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:57 Download gff for
BO07890.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6432-PA | 1114..2025 | 16..927 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:49 Download gff for
BO07890.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6432-PA | 1114..2025 | 16..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:09:22 Download gff for
BO07890.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6432-RA | 1224..2134 | 19..929 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:27:02 Download gff for
BO07890.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6432-RA | 1224..2134 | 19..929 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:27:02 Download gff for
BO07890.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24338977..24339231 | 675..929 | 100 | -> | Minus |
| 3R | 24339296..24339441 | 529..674 | 100 | -> | Minus |
| 3R | 24339555..24340064 | 19..528 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:09:22 Download gff for
BO07890.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20164699..20164953 | 675..929 | 100 | -> | Minus |
| arm_3R | 20165018..20165163 | 529..674 | 100 | -> | Minus |
| arm_3R | 20165277..20165786 | 19..528 | 100 | | Minus |
BO07890.5prime Sequence
948 bp (837 high quality bases) assembled on 2006-01-06
> BO07890.5prime
GAAGTTATCAGTCGACATGGAACCCGGTCCTAGTGCAGTGAACTACGAAG
GCAGTGAATCTGTATGCGGCATGCCGGTGGAGGCTCACGATCCTCTCTAC
TTGAAGGCCTATCGCCAGAGTGTTCAGAATCCGGCTGCATTTTGGGAGGA
GCAGGGTAACCTGCTCGACTGGGATCGGCCATGGGAGAAGGTACTGGACA
ACAGTAATCCGCCATTCACCAAGTGGTATGTGGGTGGCTACCTGAATGCC
TGCTACAATTCCATTGATCGCCACATACTGGCCGGCCGCGGCTCCAATGT
GGCCCTAATCCATGACAGCCCCTTGACTGGCACACTGCGTCGGGTTACCT
ATCAGGAGCTGTATGACCAGATCGTTCTGCTGGCAGGCGGCCTGGCCAAA
TTGGGCGTGGTCAAAGGTGATCGCGTCGTGATCTACATGCCCCTCATCCC
GGAGACCATCATTGCCATGCTGGCAATTGTGCGTCTGGGTGCGATTCACT
CCGTGGTCTTCGGTGGCTTCGCTGCCCGCGAACTCTGCTCGCGCATCGAA
CATGTGGAACCAAAACTGGTGATCGCCTCCAATGTGGGCGTGGAGCCGGG
CAAAGTGGTGCCCTACCTGGACATCCTTCATTCAGCTATTAGCATGTCGC
GATGGCGACCACCGCAGCGTAACATAATCTTTCGGCGTGATAATGTTTCG
CCAGATACCACCAAACTGGATCCTCTGACGGATGTGCTCTGGTCGGATAT
TCTTAAGATGGCGGAGGGCGAGCGGCCCATAGCCTGTGTTCCCATCGAGG
CCAACGATCCTTTGTATATCCTCTATACCTCTGGAACGACGGATAAGCCC
AAGGGAGTACTTCGCACCATCGGAGGTCACTTGGTTGCTCTGGTGTACAC
GCTGAGAACTCTCTATGGCATCAATCCTGGCCACACCTGGTGGGCGGG
BO07890.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6432-PA | 2025 | CG6432-RA | 1..931 | 17..947 | 4655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:25:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6432-RB | 2715 | CG6432-RB | 113..1043 | 17..947 | 4655 | 100 | Plus |
| CG6432-RA | 2267 | CG6432-RA | 113..1043 | 17..947 | 4655 | 100 | Plus |
| Dis3-RA | 3588 | CG6413-RA | 3374..3412 | 17..55 | 195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:25:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24337847..24338740 | 54..947 | 4470 | 100 | Plus |
| 3R | 32079331 | 3R | 24337034..24337072 | 17..55 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:25:39 has no hits.
BO07890.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:58 Download gff for
BO07890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6432-PA | 1..931 | 17..948 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:50 Download gff for
BO07890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6432-PA | 1..931 | 17..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:08:50 Download gff for
BO07890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6432-RA | 106..1043 | 10..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:59:49 Download gff for
BO07890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6432-RA | 106..1043 | 10..948 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:59:49 Download gff for
BO07890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24337027..24337070 | 10..53 | 93 | -> | Plus |
| 3R | 24337847..24338740 | 54..948 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:08:50 Download gff for
BO07890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20162749..20162792 | 10..53 | 93 | -> | Plus |
| arm_3R | 20163569..20164462 | 54..948 | 99 | | Plus |
BO07890.complete Sequence
2056 bp (2056 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630980
> BO07890.complete
GAAGTTATCAGTCGACATGGAACCCGGTCCTAGTGCAGTGAACTACGAAG
GCAGTGAATCTGTATGCGGCATGCCGGTGGAGGCTCACGATCCTCTCTAC
TTGAAGGCCTATCGCCAGAGTGTTCAGAATCCGGCTGCATTTTGGGAGGA
GCAGGGTAACCTGCTCGACTGGGATCGGCCATGGGAGAAGGTACTGGACA
ACAGTAATCCGCCATTCACCAAGTGGTATGTGGGTGGCTACCTGAATGCC
TGCTACAATTCCATTGATCGCCACATACTGGCCGGCCGCGGCTCCAATGT
GGCCCTAATCCATGACAGCCCCTTGACTGGCACACTGCGTCGGGTTACCT
ATCAGGAGCTGTATGACCAGATCGTTCTGCTGGCAGGCGGCCTGGCCAAA
TTGGGCGTGGTCAAAGGTGATCGCGTCGTGATCTACATGCCCCTCATCCC
GGAGACCATCATTGCCATGCTGGCAATTGTGCGTCTGGGTGCGATTCACT
CCGTGGTCTTCGGTGGCTTCGCTGCCCGCGAACTCTGCTCGCGCATCGAA
CATGTGGAACCAAAACTGGTGATCGCCTCCAATGTGGGCGTGGAGCCGGG
CAAAGTGGTGCCCTACCTGGACATCCTTCATTCAGCTATTAGCATGTCGC
GATGGCGACCACCGCAGCGTAACATAATCTTTCGGCGTGATAATGTTTCG
CCAGATACCACCAAACTGGATCCTCTGACGGATGTGCTCTGGTCGGATAT
TCTTAAGATGGCGGAGGGCGAGCGGCCCATAGCCTGTGTTCCCATCGAGG
CCAACGATCCTTTGTATATCCTCTATACCTCTGGAACGACGGATAAGCCC
AAGGGAGTACTTCGCACCATCGGAGGTCACTTGGTTGCTCTGGTGTACAC
GCTGAGAACTCTCTATGGCATCAATCCTGGCCACACCTGGTGGGCGGCCT
CAGATATGGGCTGGGTGGTGGGTCACTCGTACATCTGCTACGGTCCACTC
TGCCTCGGAGCCACCAGTGTTATGTACGAGGGTAAACCGGACCGTACTCC
TGACCCGGGTCAGTACTTTAGGATCATCGACCAATACCAGGTGCGCTCGA
TCTTCTCGGTACCTACCTCCTTCCGTGTTATCCGTCGTGCTGATCCGGAC
ATCAGCTATGGGCGACAGTACTCCATGAAGTCGCTGCGTGCCATCTTCAT
TGCCGGCGAGCACTGCGACTACGAGACCAAGTCCTGGATCGAGAAGACCT
TCAAGGTGCCCGTGCTCAACCACTGGTGGCAGACGGAGACTGGTTCCGCG
GTCACCGCCACATGCCTGGGCTTCCAGCAGAACCTCAGTCCGCCCACTTA
CTCCACTGGCTTGCCACTCATGGGCTACGACGTCAAGATCCTGAAAGCGG
ACGGCAGCGAGGCGCAGACCTCGGAGCTGGGCAGGATTGCTCTTAAGCTA
CCACTGCCACCCGGAAACATGGCCACTCTTTACAAAAACGAAGAGCTCTT
CCGCACGCTTTACTTTCAAAAGTTTCCGGGTTACTATGATACAATGGATG
CGGGCTACAAGGACGAACGTGGCTATATCTTTGTGACAGCTCGCGACGAT
GATGTAATCAATGTGGCTGGCCATCGCTTGTCCACCTCTAGCCTGGAAGA
CGCCGTGCTTCGGCATCCGGACGTCGTGGACGTGGCCGTTTTCGGGGTGC
CCGAGGCCACCAAGGGACAGGTACCACTGTGCCTGTACATTCCGGTGGAG
AACTGCAAGAAGACCGATGCCAAGCTGTCGACGGAGATCATCAAGCTGAT
CCGCGACGTCGTAGGCCCCATAGCCGCCTTCCGGCTGGTCACGTCCGTCA
ACAACCTGCCACGCACTCGATCCGGTAAGACGATGCGCAAGGCGATGGCG
GACTTTGCCCGCAATGAGCGCGTTGTCCTGCCGGCGACTATCGATGATGC
CAGCGTGTTCATCGAGATCCGGAGGGCTCTGAACCAGTTGGGCTATGCCA
TGACCGCACCGGATCCGATTGTGGCCAAGTTACTCGACGCAAGCTTTCTA
GACCAT
BO07890.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:44:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6432-RB | 2025 | CG6432-PB | 1..2022 | 17..2038 | 10110 | 100 | Plus |
| CG6432-RA | 2025 | CG6432-PA | 1..2022 | 17..2038 | 10110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:44:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6432-RB | 2715 | CG6432-RB | 113..2134 | 17..2038 | 10110 | 100 | Plus |
| CG6432-RA | 2267 | CG6432-RA | 113..2134 | 17..2038 | 10110 | 100 | Plus |
| Dis3-RA | 3588 | CG6413-RA | 3374..3412 | 17..55 | 195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:44:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24337847..24338865 | 54..1072 | 5095 | 100 | Plus |
| 3R | 32079331 | 3R | 24339554..24340064 | 1528..2038 | 2555 | 100 | Plus |
| 3R | 32079331 | 3R | 24338919..24339231 | 1070..1382 | 1565 | 100 | Plus |
| 3R | 32079331 | 3R | 24339295..24339442 | 1382..1529 | 740 | 100 | Plus |
| 3R | 32079331 | 3R | 24337034..24337072 | 17..55 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:44:16 has no hits.
BO07890.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:26 Download gff for
BO07890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6432-RA | 1..2025 | 17..2041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:00 Download gff for
BO07890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6432-RA | 106..2134 | 10..2038 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:42 Download gff for
BO07890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6432-RA | 113..2134 | 17..2040 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:27 Download gff for
BO07890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6432-RA | 106..2134 | 10..2038 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:40 Download gff for
BO07890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6432-RA | 113..2134 | 17..2040 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:40 Download gff for
BO07890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24339555..24340064 | 1529..2040 | 99 | | Plus |
| 3R | 24337034..24337070 | 17..53 | 100 | -> | Plus |
| 3R | 24337847..24338864 | 54..1071 | 100 | -> | Plus |
| 3R | 24338921..24339231 | 1072..1382 | 100 | -> | Plus |
| 3R | 24339296..24339441 | 1383..1528 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:42 Download gff for
BO07890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20162756..20162792 | 17..53 | 100 | -> | Plus |
| arm_3R | 20163569..20164586 | 54..1071 | 100 | -> | Plus |
| arm_3R | 20164643..20164953 | 1072..1382 | 100 | -> | Plus |
| arm_3R | 20165018..20165163 | 1383..1528 | 100 | -> | Plus |
| arm_3R | 20165277..20165786 | 1529..2040 | 99 | | Plus |
BO07890.pep Sequence
Translation from 16 to 2056
> BO07890.pep
MEPGPSAVNYEGSESVCGMPVEAHDPLYLKAYRQSVQNPAAFWEEQGNLL
DWDRPWEKVLDNSNPPFTKWYVGGYLNACYNSIDRHILAGRGSNVALIHD
SPLTGTLRRVTYQELYDQIVLLAGGLAKLGVVKGDRVVIYMPLIPETIIA
MLAIVRLGAIHSVVFGGFAARELCSRIEHVEPKLVIASNVGVEPGKVVPY
LDILHSAISMSRWRPPQRNIIFRRDNVSPDTTKLDPLTDVLWSDILKMAE
GERPIACVPIEANDPLYILYTSGTTDKPKGVLRTIGGHLVALVYTLRTLY
GINPGHTWWAASDMGWVVGHSYICYGPLCLGATSVMYEGKPDRTPDPGQY
FRIIDQYQVRSIFSVPTSFRVIRRADPDISYGRQYSMKSLRAIFIAGEHC
DYETKSWIEKTFKVPVLNHWWQTETGSAVTATCLGFQQNLSPPTYSTGLP
LMGYDVKILKADGSEAQTSELGRIALKLPLPPGNMATLYKNEELFRTLYF
QKFPGYYDTMDAGYKDERGYIFVTARDDDVINVAGHRLSTSSLEDAVLRH
PDVVDVAVFGVPEATKGQVPLCLYIPVENCKKTDAKLSTEIIKLIRDVVG
PIAAFRLVTSVNNLPRTRSGKTMRKAMADFARNERVVLPATIDDASVFIE
IRRALNQLGYAMTAPDPIVAKLLDASFLDH
BO07890.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6432-PB | 674 | CG6432-PB | 1..674 | 1..674 | 3555 | 100 | Plus |
| CG6432-PA | 674 | CG6432-PA | 1..674 | 1..674 | 3555 | 100 | Plus |
| AcCoAS-PD | 670 | CG9390-PD | 26..646 | 28..637 | 899 | 34.4 | Plus |
| AcCoAS-PA | 670 | CG9390-PA | 26..646 | 28..637 | 899 | 34.4 | Plus |
| AcCoAS-PB | 524 | CG9390-PB | 1..500 | 141..637 | 734 | 34.7 | Plus |
