Clone BO07892 Report

Search the DGRC for BO07892

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:78
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCG15279-RA
Protein status:BO07892.pep: validated full length
Sequenced Size:1951

Clone Sequence Records

BO07892.3prime Sequence

880 bp (760 high quality bases) assembled on 2006-01-06

> BO07892.3prime
ATGGTCTAGAAAGCTTGCACCAAAGATGTTTTGCTTGATGGCAGCCCAAA
TTCCCTGACCACGTTTCGGGGTCAACTCATTCTCGATTTCCTTGTGATAC
TGTTCCCGGAGCAGAGGGTCACTGGGTCCCCAATTCTTTTTCGGCGTAAA
GGCTCCACGGATTTTTGCACCCAAAGTCTGACCTGGATCTCGAACAATGG
CCACGATCATCCAAATGGGCAGCTGAAGAATACCGAAGGCCGTTATTAGC
CAACCAATTGAGTAAGACCAATTTGGATAGACGATATTGTTGTATGTTAG
AGGTTGGTAGGTCGCATAGAAATAGATCAGAATAACAGTCATGATCAGCG
GGGTAATGATGCTCCAGCAGAGCCTCCAGTACAGGCCCACTTTGCGACCC
AGCATGAACTCAATGTCCTTGCACAGGCGATCTGTGCCATAAATCCATCC
AATGGTGTACAGCTCGGCGATTCCCAGTACCAAAGCAATCATTGAGGCGC
CGAAAAAGTCCACAAGAGTCAGCATATACTGACCGCCCGGTGTTATATAC
ATTAATCCAATAAAGAAACTGACTACAGCGATGAGCAGCGAGCACTGCCA
CTGCCCAAAGTTGGGAAACCGATCCCGAATGGCGGTCACCGAGCAGGAGG
TCATGGCTATATTCGATCCTATGCCCAACACGAAGAGCATGAGGAAGAAC
AGCACTGAGAAGATTTGTGGCAGATTCTTGAACTTGGCAATGGCATCGGG
ATATGAGATGAAGGCCAATCCGGCACCGCCCTTCACAACTGAGCCGATGT
CATCGGTTCCGATTTCGTGGGCCAGATGGCCGAGGATACCGAATATCGTG
AATCCAGCTAGCAGAGAGGTCATAGTGTCC

BO07892.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG15279-PB 1920 CG15279-RB 1056..1917 880..19 4310 100 Minus
CG15279-PA 1920 CG15279-RA 1056..1917 880..19 4310 100 Minus
CG15279-PC 2220 CG15279-RC 1356..2217 880..19 4310 100 Minus
CG15088-PB 1590 CG15088-RB 982..1038 786..730 160 91.2 Minus
CG15088-PA 1686 CG15088-RA 982..1038 786..730 160 91.2 Minus
CG4476-PB 1890 CG4476-RB 1123..1166 771..728 145 93.1 Minus
CG1698-PA 1965 CG1698-RA 1261..1292 711..680 135 96.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:44:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG15279-RD 2513 CG15279-RD 1525..2386 880..19 4310 100 Minus
CG15279-RA 2110 CG15279-RA 1122..1983 880..19 4310 100 Minus
CG15279-RB 2531 CG15279-RB 1543..2404 880..19 4310 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14845752..14846095 537..880 1720 100 Plus
2L 23513712 2L 14845417..14845694 261..538 1390 100 Plus
2L 23513712 2L 14845120..14845361 19..260 1210 100 Plus
2R 25286936 2R 9797149..9797273 767..643 235 79.2 Minus
2R 25286936 2R 18728844..18728914 716..786 235 88.7 Plus
3L 28110227 3L 9214129..9214227 771..673 225 81.8 Minus
2R 25286936 2R 12299631..12299734 659..762 220 80.8 Plus
Blast to na_te.dros performed on 2015-02-11 17:44:23 has no hits.

BO07892.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:32:01 Download gff for BO07892.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15279-PC 1356..2220 16..880 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:54 Download gff for BO07892.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15279-PB 1056..1920 16..880 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:45:02 Download gff for BO07892.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15279-RB 1543..2404 19..880 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:26:33 Download gff for BO07892.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15279-RB 1543..2404 19..880 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:26:33 Download gff for BO07892.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 14845120..14845361 19..260 100 <- Plus
2L 14845417..14845693 261..537 100 <- Plus
2L 14845753..14846095 538..880 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:45:02 Download gff for BO07892.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14845120..14845361 19..260 100 <- Plus
arm_2L 14845417..14845693 261..537 100 <- Plus
arm_2L 14845753..14846095 538..880 100   Plus

BO07892.5prime Sequence

906 bp (876 high quality bases) assembled on 2006-01-06

> BO07892.5prime
GAAGTTATCAGTCGACATGGATACGACGCAAAGGAACCACCAAAATCTAG
CCTTCGTGGGCGACGACGGACGCAGTACGGCCAGCACAGTGGAGATTTCG
ACCAACAGTCCAGCCCTGCGAGATAATTCCGATGACCAGGAGGCAGCCAA
AGTGCCAGAGGAGCGTGCCACCTGGGGCAAGGGCGTGGAGTTTCTGATGT
CCTGCATCGCCATGTCCGTGGGTCTGGGAAACGTGTGGCGATTCCCCTTT
ACTGCCCTCGATAATGGCGGTGGCGCCTTCCTCATACCATATCTCATTGT
CCTGTTCCTGATTGGCAAACCGATTTACTATCTGGAAATGGTAATTGGCC
AGTTTTCCAGTCGGGGCTCGGTTAAAGTGTTCGATTTGTGCCCGGCGATG
AAAGGTGTTGGAGCTGGCCAGGCTTTCCAGGTGTTCATGCTCAGCACTTA
CTATGCCGCCCTGGTAGCGATAATTGGCCGATATTTCATTGAATCATTTC
GCAACCCATTGCCCTGGTCCACATGCCGTGCGGAATGGGGTATCCACTGC
ATTAACTCAGCCCCCGATGCGAGTAATTGGTCTCAACTGGAAAGCAATGA
TCAGCGCCCGCAAAATTACACAATGAAATCACAAAACGATCGGGTCATCA
CCAGTTCGGAATGGTACTTTGTTAAGGAAGTGCTGCACGAGAAACCAAAT
ATCGAGGAAGGAATCGGCCTACCAAACTGGGAGTTGGTCATTGGACTTTT
TATCGCCTGGTCCTGTGTGTTTTTCATTATTCGTCGCGGAGTGAAGAGTT
CGGGAAAGGCATCCTACTTCCTGGCCCTTTTCCCGTACGTCATCATGGGT
GTTCTTCTGGTGCGAGCTGTAACTCTGCCGGGGATCATAGACGGTATATA
CTACTT

BO07892.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG15279-PB 1920 CG15279-RB 1..866 17..882 4330 100 Plus
CG15279-PA 1920 CG15279-RA 1..866 17..882 4330 100 Plus
CG15279-PC 2220 CG15279-RC 729..1166 445..882 2190 100 Plus
CG15279-PC 2220 CG15279-RC 1..388 17..404 1940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:00:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG15279-RA 2110 CG15279-RA 67..956 17..906 4405 99.8 Plus
CG15279-RB 2531 CG15279-RB 488..1377 17..906 4405 99.8 Plus
CG15279-RD 2513 CG15279-RD 488..893 17..422 1970 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:00:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14848672..14848978 406..100 1535 100 Minus
2L 23513712 2L 14846790..14847060 672..402 1355 100 Minus
2L 23513712 2L 14846261..14846494 906..673 1110 98.3 Minus
2L 23513712 2L 14849039..14849122 100..17 420 100 Minus
2R 25286936 2R 12300722..12300885 336..173 325 79.9 Minus
3L 28110227 3L 9212982..9213163 186..367 310 78 Plus
2R 25286936 2R 9795678..9795857 188..367 240 75.6 Plus
Blast to na_te.dros performed on 2015-02-11 03:00:10 has no hits.

BO07892.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:32:01 Download gff for BO07892.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15279-PA 1..890 17..906 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:55 Download gff for BO07892.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15279-PA 1..890 17..906 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:23:45 Download gff for BO07892.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15279-RB 488..1377 17..906 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:24:43 Download gff for BO07892.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15279-RB 488..1377 17..906 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:24:43 Download gff for BO07892.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 14846790..14847057 405..672 100 <- Minus
2L 14848674..14848977 101..404 100 <- Minus
2L 14849039..14849122 17..100 100   Minus
2L 14846261..14846494 673..906 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:23:45 Download gff for BO07892.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14846261..14846494 673..906 99 <- Minus
arm_2L 14846790..14847057 405..672 100 <- Minus
arm_2L 14848674..14848977 101..404 100 <- Minus
arm_2L 14849039..14849122 17..100 100   Minus

BO07892.complete Sequence

1951 bp (1951 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ630981

> BO07892.complete
GAAGTTATCAGTCGACATGGATACGACGCAAAGGAACCACCAAAATCTAG
CCTTCGTGGGCGACGACGGACGCAGTACGGCCAGCACAGTGGAGATTTCG
ACCAACAGTCCAGCCCTGCGAGATAATTCCGATGACCAGGAGGCAGCCAA
AGTGCCAGAGGAGCGTGCCACCTGGGGCAAGGGCGTGGAGTTTCTGATGT
CCTGCATCGCCATGTCCGTGGGTCTGGGAAACGTGTGGCGATTCCCCTTT
ACTGCCCTCGATAATGGCGGTGGCGCCTTCCTCATACCATATCTCATTGT
CCTGTTCCTGATTGGCAAACCGATTTACTATCTGGAAATGGTAATTGGCC
AGTTTTCCAGTCGGGGCTCGGTTAAAGTGTTCGATTTGTGCCCGGCGATG
AAAGGTGTTGGAGCTGGCCAGGCTTTCCAGGTGTTCATGCTCAGCACTTA
CTATGCCGCCCTGGTAGCGATAATTGGCCGATATTTCATTGAATCATTTC
GCAACCCATTGCCCTGGTCCACATGCCGTGCGGAATGGGGTATCCACTGC
ATTAACTCAGCCCCCGATGCGAGTAATTGGTCTCAACTGGAAAGCAATGA
TCAGCGCCCGCAAAATTACACAATGAAATCACAAAACGATCGGGTCATCA
CCAGTTCGGAATGGTACTTTGTTAAGGAAGTGCTGCACGAGAAACCAAAT
ATCGAGGAAGGAATCGGCCTACCAAACTGGGAGTTGGTCATTGGACTTTT
TATCGCCTGGTCCTGTGTGTTTTTCATTATTCGTCGCGGAGTGAAGAGTT
CGGGAAAGGCATCCTACTTCCTGGCCCTTTTCCCGTACGTCATCATGGGT
GTTCTTCTGGTGCGAGCTGTAACTCTGCCGGGATCAATAGACGGTATATA
CTACTTTATAAAGCCGCAATGGGGAAAGATTTTGGACCCGAAGGTTTGGT
ACGCGGCTGTAACTCAGTGTTTCTACTCCTTGTCCGTTTGTTTCGGCAAC
ATCATCATGTACTCCTCGTTCAACAAGTTCGGGCACAATGTACACAGGGA
TGCAGCAATTGTAACGGGTCTGGACACTATGACCTCTCTGCTAGCTGGAT
TCACGATATTCGGTATCCTCGGCCATCTGGCCCACGAAATCGGAACCGAT
GACATCGGCTCAGTTGTGAAGGGCGGTGCCGGATTGGCCTTCATCTCATA
TCCCGATGCCATTGCCAAGTTCAAGAATCTGCCACAAATCTTCTCAGTGC
TGTTCTTCCTCATGCTCTTCGTGTTGGGCATAGGATCGAATATAGCCATG
ACCTCCTGCTCGGTGACCGCCATTCGGGATCGGTTTCCCAACTTTGGGCA
GTGGCAGTGCTCGCTGCTCATCGCTGTAGTCAGTTTCTTTATTGGATTAA
TGTATATAACACCGGGCGGTCAGTATATGCTGACTCTTGTGGACTTTTTC
GGCGCCTCAATGATTGCTTTGGTACTGGGAATCGCCGAGCTGTACACCAT
TGGATGGATTTATGGCACAGATCGCCTGTGCAAGGACATTGAGTTCATGC
TGGGTCGCAAAGTGGGCCTGTACTGGAGGCTCTGCTGGAGCATCATTACC
CCGCTGATCATGACTGTTATTCTGATCTATTTCTATGCGACCTACCAACC
TCTAACATACAACAATATCGTCTATCCAAATTGGTCTTACTCAATTGGTT
GGCTAATAACGGCCTTCGGTATTCTTCAGCTGCCCATTTGGATGATCGTG
GCCATTGTTCGAGATCCAGGTCAGACTTTGGGTGCAAAAATCCGTGGAGC
CTTTACGCCGAAAAAGAATTGGGGACCCAGTGACCCTCTGCTCCGGGAAC
AGTATCACAAGGAAATCGAGAATGAGTTGACCCCGAAACGTGGTCAGGGA
ATTTGGGCTGCCATCAAGCAAAACATCTTTGGTGCAAGCTTTCTAGACCA
T

BO07892.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:22:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG15279-RA 1920 CG15279-PA 1..1917 17..1933 9585 100 Plus
CG15279-RB 1920 CG15279-PB 1..1917 17..1933 9585 100 Plus
CG15279-RD 1902 CG15279-PD 623..1899 657..1933 6325 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG15279-RA 2110 CG15279-RA 67..1983 17..1933 9585 100 Plus
CG15279-RB 2531 CG15279-RB 488..2404 17..1933 9585 100 Plus
CG15279-RD 2513 CG15279-RD 1110..2386 657..1933 6325 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14845752..14846494 1415..673 3715 100 Minus
2L 23513712 2L 14848672..14848978 406..100 1535 100 Minus
2L 23513712 2L 14845417..14845694 1691..1414 1390 100 Minus
2L 23513712 2L 14846790..14847060 672..402 1355 100 Minus
2L 23513712 2L 14845120..14845361 1933..1692 1210 100 Minus
2L 23513712 2L 14849039..14849122 100..17 420 100 Minus
3L 28110227 3L 9213732..9214227 784..1279 380 71.8 Plus
2R 25286936 2R 12300722..12300885 336..173 325 79.9 Minus
3L 28110227 3L 9212982..9213163 186..367 310 78 Plus
X 23542271 X 5407749..5407901 312..160 255 77.8 Minus
2R 25286936 2R 9795678..9795857 188..367 240 75.6 Plus
2R 25286936 2R 9797149..9797273 1185..1309 235 79.2 Plus
2R 25286936 2R 18728844..18728914 1236..1166 235 88.7 Minus
2R 25286936 2R 12299631..12299734 1293..1190 220 80.8 Minus
X 23542271 X 5406453..5406559 1287..1181 220 80.4 Minus
Blast to na_te.dros performed on 2014-11-27 14:22:10 has no hits.

BO07892.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:20 Download gff for BO07892.complete
Subject Subject Range Query Range Percent Splice Strand
CG15279-RA 1..1920 17..1936 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:49 Download gff for BO07892.complete
Subject Subject Range Query Range Percent Splice Strand
CG15279-RA 39..1955 17..1933 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:07 Download gff for BO07892.complete
Subject Subject Range Query Range Percent Splice Strand
CG15279-RB 488..2404 17..1935 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:20 Download gff for BO07892.complete
Subject Subject Range Query Range Percent Splice Strand
CG15279-RA 39..1955 17..1933 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:50 Download gff for BO07892.complete
Subject Subject Range Query Range Percent Splice Strand
CG15279-RB 488..2404 17..1935 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:50 Download gff for BO07892.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14845417..14845693 1415..1691 100 <- Minus
2L 14845117..14845361 1692..1935 99 <- Minus
2L 14848674..14848977 101..404 100 <- Minus
2L 14845753..14846494 673..1414 100 <- Minus
2L 14846790..14847057 405..672 100 <- Minus
2L 14849039..14849122 17..100 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:07 Download gff for BO07892.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14845417..14845693 1415..1691 100 <- Minus
arm_2L 14845117..14845361 1692..1935 99 <- Minus
arm_2L 14845753..14846494 673..1414 100 <- Minus
arm_2L 14846790..14847057 405..672 100 <- Minus
arm_2L 14848674..14848977 101..404 100 <- Minus
arm_2L 14849039..14849122 17..100 100   Minus

BO07892.pep Sequence

Translation from 16 to 1951

> BO07892.pep
MDTTQRNHQNLAFVGDDGRSTASTVEISTNSPALRDNSDDQEAAKVPEER
ATWGKGVEFLMSCIAMSVGLGNVWRFPFTALDNGGGAFLIPYLIVLFLIG
KPIYYLEMVIGQFSSRGSVKVFDLCPAMKGVGAGQAFQVFMLSTYYAALV
AIIGRYFIESFRNPLPWSTCRAEWGIHCINSAPDASNWSQLESNDQRPQN
YTMKSQNDRVITSSEWYFVKEVLHEKPNIEEGIGLPNWELVIGLFIAWSC
VFFIIRRGVKSSGKASYFLALFPYVIMGVLLVRAVTLPGSIDGIYYFIKP
QWGKILDPKVWYAAVTQCFYSLSVCFGNIIMYSSFNKFGHNVHRDAAIVT
GLDTMTSLLAGFTIFGILGHLAHEIGTDDIGSVVKGGAGLAFISYPDAIA
KFKNLPQIFSVLFFLMLFVLGIGSNIAMTSCSVTAIRDRFPNFGQWQCSL
LIAVVSFFIGLMYITPGGQYMLTLVDFFGASMIALVLGIAELYTIGWIYG
TDRLCKDIEFMLGRKVGLYWRLCWSIITPLIMTVILIYFYATYQPLTYNN
IVYPNWSYSIGWLITAFGILQLPIWMIVAIVRDPGQTLGAKIRGAFTPKK
NWGPSDPLLREQYHKEIENELTPKRGQGIWAAIKQNIFGASFLDH

BO07892.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG15279-PA 639 CG15279-PA 1..639 1..639 3390 100 Plus
CG15279-PB 639 CG15279-PB 1..639 1..639 3390 100 Plus
CG15279-PD 633 CG15279-PD 1..633 1..639 3065 91.3 Plus
CG1698-PB 654 CG1698-PB 41..654 17..639 1854 56 Plus
CG1698-PA 654 CG1698-PA 41..654 17..639 1854 56 Plus