Clone Sequence Records
BO07913.3prime Sequence
896 bp (800 high quality bases) assembled on 2006-01-06
> BO07913.3prime
ATGGTCTAGAAAGCTTGCGGAAAAGATTATATTGAAGAGCAACTTCAGTT
CAGCAGATGCACTGCACCTAGAGTCACAGAGGACCACATCCGCGTAGATC
TGATGCTCACGACTGTATGTGAGGTTCTTAACGGTGATGAATTTCGGCTG
AACAACGCGCTGGAAGAGGTCCTCCTTGCGCTGGGCATAGCAGAGCTCGC
CGCACGGGCATCTGGGAGCCTCCCTTATCAGATCTATTAGCACAGCGGGA
ATAGAGCCCGCGGACAAGGGCAGCATATACTTATCCACAGCTCGAGCTCC
CAAAAGCCACAAAGGTTGCGGCGAATTAGATGCCGCCTTTTGCAGATACA
TTTGCTGCGCGGCATCTGCATTGAATTCCTTGAAGCAATTGCCCCACACA
TCCAACAGGTCGATCCGTAGATCCTCGACAGCAGAGGGCAGGGACTCTAG
TTCGTTGCTGCACACATAAAGTTTACGCAGTGCTTTCATCCGGCGAATGG
CAAAGGGCAGCCGACTCAGCAGATTGTTGTTGAGATTCAGCGATACAAGC
GACTCGAATTTAACCAGCGGAGGTGGAAAGTAAGTCAGCCCGTTGCCCGA
CAGATCCAGCTCGCCGAGCGACTGACAGAGCTTAGTGCCCCGCAGCCAGC
ACCAGTCATTCTGAGTACCCAGTAAGTTGTTGCCCAGGTGCAGCGAGGTG
AGCGGAAGACGACCCAGCTCCGAGGGAATCTTGGTCAGCTTGTTACCGCT
GACATCCAGCTTTGTGAGGTTGCGCAGGGTGCATATCTCGAAGCTCAGCT
TCACTAGCTGGCTGTTGTTGATGGTCAGCGATTTGAGGGTGCGCGAAAAT
CCCTTGATGGGATACTCGCTCCGCTTGCTGATTACCATGCGCACCT
BO07913.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:13:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6098-PA | 1287 | Lrr47-RA | 407..1284 | 896..19 | 4365 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:03:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lrr47-RB | 1874 | CG6098-RB | 498..1375 | 896..19 | 4375 | 99.9 | Minus |
Lrr47-RA | 1589 | CG6098-RA | 498..1375 | 896..19 | 4375 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:03:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10518058..10518770 | 731..19 | 3565 | 100 | Minus |
2L | 23513712 | 2L | 10517832..10517998 | 896..730 | 820 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:03:51 has no hits.
BO07913.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:32:23 Download gff for
BO07913.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lrr47-PA | 407..1287 | 16..896 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:20:27 Download gff for
BO07913.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6098-PA | 407..1287 | 16..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:46:50 Download gff for
BO07913.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lrr47-RA | 498..1375 | 19..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:56:18 Download gff for
BO07913.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lrr47-RA | 498..1375 | 19..896 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:56:18 Download gff for
BO07913.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10517832..10517998 | 730..896 | 99 | -> | Minus |
2L | 10518060..10518770 | 19..729 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:46:50 Download gff for
BO07913.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10517832..10517998 | 730..896 | 99 | -> | Minus |
arm_2L | 10518060..10518770 | 19..729 | 100 | | Minus |
BO07913.5prime Sequence
893 bp (874 high quality bases) assembled on 2006-01-06
> BO07913.5prime
GAAGTTATCAGTCGACATGAAGATTTTGTGCGAAGTTCAGGTGGTGAATC
GCGCCACCCAGACGAACAAAACGCCACGTCCCGTGAAATCCACACTGGCC
ATTGGCTACAAGCAAAGCGCCAGGGATGCGAATGGAAACACCAAGAAGGA
GCTGGAAATGGTGCTCTTTAGTGGACAAAACAAGACTGGAAATCGCTACA
AGGTCAAGGATAACATTCATGTCGTGCACACCAAGTTTGTGCTGGATGGG
AAGACCACCATTGGTTTCATACAGCCGCCAGATAACCTGCTTATTAAGTG
CGATCCTATCCAGCTGAAAGGATTCCTGCAGACCCTCAAGCTGGGCATGG
ATGGCAAGGACGCCATCAATTTGAGACTGAACATAAACGCCGCTACGGCA
ATTCCGCAGAAGGCACAGCCCCAGGTGCGCATGGTAATCAGCAAGCGGAG
CGAGTATCCCATCAAGGGATTTCCGCGCACCCTCAAATCGCTGACCATCA
ACAACAGCCAGCTAGTGAAGCTGAGCTTCGAGATATGCACCCTGCGCAAC
CTCACAAAGCTGGATGTCAGCGGTAACAAGCTGACCAAGATTCCCTCGGA
GCTGGGTCGTCTTCCGCTCACCTCGCTGCACCTGGGCAACAACTTACTGG
GTACTCAGAATGACTGGTGCTGGCTGCGGGGCACTAAGCTCTGTCAGTCG
CTCGGCGAGCTGGATCTGTCGGGCAACGGGCTGACTTACTTTCCACCTCC
GCTGGTTAAATTCGAGTCGCTTGTATCGCTGAATCTCAACAACAATCTGC
TGAGTCGGCTGCCCTTTGCCATTCGCCGGATGAAAGCACTGCGTAAACTT
TATGTGTGCAGCAACGAACTAGAGTCCCTGCCCTCTGCTGTCG
BO07913.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:13:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6098-PA | 1287 | Lrr47-RA | 1..877 | 17..893 | 4385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:39:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lrr47-RB | 1874 | CG6098-RB | 87..968 | 12..893 | 4395 | 99.9 | Plus |
Lrr47-RA | 1589 | CG6098-RA | 87..968 | 12..893 | 4395 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:39:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10517421..10517998 | 12..589 | 2875 | 99.8 | Plus |
2L | 23513712 | 2L | 10518058..10518363 | 588..893 | 1530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 15:39:03 has no hits.
BO07913.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:32:24 Download gff for
BO07913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lrr47-PA | 1..877 | 17..893 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:20:28 Download gff for
BO07913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6098-PA | 1..877 | 17..893 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:08:14 Download gff for
BO07913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lrr47-RA | 87..968 | 12..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:20:09 Download gff for
BO07913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lrr47-RA | 87..968 | 12..893 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:20:09 Download gff for
BO07913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10517421..10517998 | 12..589 | 99 | -> | Plus |
2L | 10518060..10518363 | 590..893 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:08:14 Download gff for
BO07913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10517421..10517998 | 12..589 | 99 | -> | Plus |
arm_2L | 10518060..10518363 | 590..893 | 100 | | Plus |
BO07913.complete Sequence
1318 bp (1318 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630982
> BO07913.complete
GAAGTTATCAGTCGACATGAAGATTTTGTGCGAAGTTCAGGTGGTGAATC
GCGCCACCCAGACGAACAAAACGCCACGTCCCGTGAAATCCACACTGGCC
ATTGGCTACAAGCAAAGCGCCAGGGATGCGAATGGAAACACCAAGAAGGA
GCTGGAAATGGTGCTCTTTAGTGGACAAAACAAGACTGGAAATCGCTACA
AGGTCAAGGATAACATTCATGTCGTGCACACCAAGTTTGTGCTGGATGGG
AAGACCACCATTGGTTTCATACAGCCGCCAGATAACCTGCTTATTAAGTG
CGATCCTATCCAGCTGAAAGGATTCCTGCAGACCCTCAAGCTGGGCATGG
ATGGCAAGGACGCCATCAATTTGAGACTGAACATAAACGCCGCTACGGCA
ATTCCGCAGAAGGCACAGCCCCAGGTGCGCATGGTAATCAGCAAGCGGAG
CGAGTATCCCATCAAGGGATTTCCGCGCACCCTCAAATCGCTGACCATCA
ACAACAGCCAGCTAGTGAAGCTGAGCTTCGAGATATGCACCCTGCGCAAC
CTCACAAAGCTGGATGTCAGCGGTAACAAGCTGACCAAGATTCCCTCGGA
GCTGGGTCGTCTTCCGCTCACCTCGCTGCACCTGGGCAACAACTTACTGG
GTACTCAGAATGACTGGTGCTGGCTGCGGGGCACTAAGCTCTGTCAGTCG
CTCGGCGAGCTGGATCTGTCGGGCAACGGGCTGACTTACTTTCCACCTCC
GCTGGTTAAATTCGAGTCGCTTGTATCGCTGAATCTCAACAACAATCTGC
TGAGTCGGCTGCCCTTTGCCATTCGCCGGATGAAAGCACTGCGTAAACTT
TATGTGTGCAGCAACGAACTAGAGTCCCTGCCCTCTGCTGTCGAGGATCT
ACGGATCGACCTGTTGGATGTGTGGGGCAATTGCTTCAAGGAATTCAATG
CAGATGCCGCGCAGCAAATGTATCTGCAAAAGGCGGCATCTAATTCGCCG
CAACCTTTGTGGCTTTTGGGAGCTCGAGCTGTGGATAAGTATATGCTGCC
CTTGTCCGCGGGCTCTATTCCCGCTGTGCTAATAGATCTGATAAGGGAGG
CTCCCAGATGCCCGTGCGGCGAGCTCTGCTATGCCCAGCGCAAGGAGGAC
CTCTTCCAGCGCGTTGTTCAGCCGAAATTCATCACCGTTAAGAACCTCAC
ATACAGTCGTGAGCATCAGATCTACGCGGATGTGGTCCTCTGTGACTCTA
GGTGCAGTGCATCTGCTGAACTGAAGTTGCTCTTCAATATAATCTTTTCC
GCAAGCTTTCTAGACCAT
BO07913.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:30:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lrr47-RB | 1287 | CG6098-PB | 1..1284 | 17..1300 | 6420 | 100 | Plus |
Lrr47-RA | 1287 | CG6098-PA | 1..1284 | 17..1300 | 6420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:30:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lrr47-RB | 1874 | CG6098-RB | 87..1375 | 12..1300 | 6430 | 99.9 | Plus |
Lrr47-RA | 1589 | CG6098-RA | 87..1375 | 12..1300 | 6430 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:30:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10518058..10518770 | 588..1300 | 3565 | 100 | Plus |
2L | 23513712 | 2L | 10517421..10517998 | 12..589 | 2875 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:30:45 has no hits.
BO07913.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:09 Download gff for
BO07913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lrr47-RA | 1..1287 | 17..1303 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:52 Download gff for
BO07913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lrr47-RA | 85..1373 | 12..1300 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:53 Download gff for
BO07913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lrr47-RA | 92..1375 | 17..1302 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:10 Download gff for
BO07913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lrr47-RA | 85..1373 | 12..1300 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:46 Download gff for
BO07913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lrr47-RA | 92..1375 | 17..1302 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:46 Download gff for
BO07913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10517426..10517998 | 17..589 | 100 | -> | Plus |
2L | 10518060..10518770 | 590..1302 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:53 Download gff for
BO07913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10517426..10517998 | 17..589 | 100 | -> | Plus |
arm_2L | 10518060..10518770 | 590..1302 | 99 | | Plus |
BO07913.pep Sequence
Translation from 16 to 1318
> BO07913.pep
MKILCEVQVVNRATQTNKTPRPVKSTLAIGYKQSARDANGNTKKELEMVL
FSGQNKTGNRYKVKDNIHVVHTKFVLDGKTTIGFIQPPDNLLIKCDPIQL
KGFLQTLKLGMDGKDAINLRLNINAATAIPQKAQPQVRMVISKRSEYPIK
GFPRTLKSLTINNSQLVKLSFEICTLRNLTKLDVSGNKLTKIPSELGRLP
LTSLHLGNNLLGTQNDWCWLRGTKLCQSLGELDLSGNGLTYFPPPLVKFE
SLVSLNLNNNLLSRLPFAIRRMKALRKLYVCSNELESLPSAVEDLRIDLL
DVWGNCFKEFNADAAQQMYLQKAASNSPQPLWLLGARAVDKYMLPLSAGS
IPAVLIDLIREAPRCPCGELCYAQRKEDLFQRVVQPKFITVKNLTYSREH
QIYADVVLCDSRCSASAELKLLFNIIFSASFLDH
BO07913.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:33:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lrr47-PB | 428 | CG6098-PB | 1..428 | 1..428 | 2209 | 100 | Plus |
Lrr47-PA | 428 | CG6098-PA | 1..428 | 1..428 | 2209 | 100 | Plus |
CG32687-PB | 377 | CG32687-PB | 23..224 | 120..296 | 164 | 27.2 | Plus |
CG32687-PA | 377 | CG32687-PA | 23..224 | 120..296 | 164 | 27.2 | Plus |
scrib-PC | 1247 | CG43398-PC | 192..329 | 148..289 | 162 | 37.1 | Plus |