Clone BO07913 Report

Search the DGRC for BO07913

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:79
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptLrr47-RA
Protein status:BO07913.pep: validated full length
Sequenced Size:1318

Clone Sequence Records

BO07913.3prime Sequence

896 bp (800 high quality bases) assembled on 2006-01-06

> BO07913.3prime
ATGGTCTAGAAAGCTTGCGGAAAAGATTATATTGAAGAGCAACTTCAGTT
CAGCAGATGCACTGCACCTAGAGTCACAGAGGACCACATCCGCGTAGATC
TGATGCTCACGACTGTATGTGAGGTTCTTAACGGTGATGAATTTCGGCTG
AACAACGCGCTGGAAGAGGTCCTCCTTGCGCTGGGCATAGCAGAGCTCGC
CGCACGGGCATCTGGGAGCCTCCCTTATCAGATCTATTAGCACAGCGGGA
ATAGAGCCCGCGGACAAGGGCAGCATATACTTATCCACAGCTCGAGCTCC
CAAAAGCCACAAAGGTTGCGGCGAATTAGATGCCGCCTTTTGCAGATACA
TTTGCTGCGCGGCATCTGCATTGAATTCCTTGAAGCAATTGCCCCACACA
TCCAACAGGTCGATCCGTAGATCCTCGACAGCAGAGGGCAGGGACTCTAG
TTCGTTGCTGCACACATAAAGTTTACGCAGTGCTTTCATCCGGCGAATGG
CAAAGGGCAGCCGACTCAGCAGATTGTTGTTGAGATTCAGCGATACAAGC
GACTCGAATTTAACCAGCGGAGGTGGAAAGTAAGTCAGCCCGTTGCCCGA
CAGATCCAGCTCGCCGAGCGACTGACAGAGCTTAGTGCCCCGCAGCCAGC
ACCAGTCATTCTGAGTACCCAGTAAGTTGTTGCCCAGGTGCAGCGAGGTG
AGCGGAAGACGACCCAGCTCCGAGGGAATCTTGGTCAGCTTGTTACCGCT
GACATCCAGCTTTGTGAGGTTGCGCAGGGTGCATATCTCGAAGCTCAGCT
TCACTAGCTGGCTGTTGTTGATGGTCAGCGATTTGAGGGTGCGCGAAAAT
CCCTTGATGGGATACTCGCTCCGCTTGCTGATTACCATGCGCACCT

BO07913.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:13:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6098-PA 1287 Lrr47-RA 407..1284 896..19 4365 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:03:52
Subject Length Description Subject Range Query Range Score Percent Strand
Lrr47-RB 1874 CG6098-RB 498..1375 896..19 4375 99.9 Minus
Lrr47-RA 1589 CG6098-RA 498..1375 896..19 4375 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:03:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10518058..10518770 731..19 3565 100 Minus
2L 23513712 2L 10517832..10517998 896..730 820 99.4 Minus
Blast to na_te.dros performed on 2015-02-11 22:03:51 has no hits.

BO07913.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:32:23 Download gff for BO07913.3prime
Subject Subject Range Query Range Percent Splice Strand
Lrr47-PA 407..1287 16..896 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:20:27 Download gff for BO07913.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6098-PA 407..1287 16..896 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:46:50 Download gff for BO07913.3prime
Subject Subject Range Query Range Percent Splice Strand
Lrr47-RA 498..1375 19..896 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:56:18 Download gff for BO07913.3prime
Subject Subject Range Query Range Percent Splice Strand
Lrr47-RA 498..1375 19..896 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:56:18 Download gff for BO07913.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10517832..10517998 730..896 99 -> Minus
2L 10518060..10518770 19..729 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:46:50 Download gff for BO07913.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10517832..10517998 730..896 99 -> Minus
arm_2L 10518060..10518770 19..729 100   Minus

BO07913.5prime Sequence

893 bp (874 high quality bases) assembled on 2006-01-06

> BO07913.5prime
GAAGTTATCAGTCGACATGAAGATTTTGTGCGAAGTTCAGGTGGTGAATC
GCGCCACCCAGACGAACAAAACGCCACGTCCCGTGAAATCCACACTGGCC
ATTGGCTACAAGCAAAGCGCCAGGGATGCGAATGGAAACACCAAGAAGGA
GCTGGAAATGGTGCTCTTTAGTGGACAAAACAAGACTGGAAATCGCTACA
AGGTCAAGGATAACATTCATGTCGTGCACACCAAGTTTGTGCTGGATGGG
AAGACCACCATTGGTTTCATACAGCCGCCAGATAACCTGCTTATTAAGTG
CGATCCTATCCAGCTGAAAGGATTCCTGCAGACCCTCAAGCTGGGCATGG
ATGGCAAGGACGCCATCAATTTGAGACTGAACATAAACGCCGCTACGGCA
ATTCCGCAGAAGGCACAGCCCCAGGTGCGCATGGTAATCAGCAAGCGGAG
CGAGTATCCCATCAAGGGATTTCCGCGCACCCTCAAATCGCTGACCATCA
ACAACAGCCAGCTAGTGAAGCTGAGCTTCGAGATATGCACCCTGCGCAAC
CTCACAAAGCTGGATGTCAGCGGTAACAAGCTGACCAAGATTCCCTCGGA
GCTGGGTCGTCTTCCGCTCACCTCGCTGCACCTGGGCAACAACTTACTGG
GTACTCAGAATGACTGGTGCTGGCTGCGGGGCACTAAGCTCTGTCAGTCG
CTCGGCGAGCTGGATCTGTCGGGCAACGGGCTGACTTACTTTCCACCTCC
GCTGGTTAAATTCGAGTCGCTTGTATCGCTGAATCTCAACAACAATCTGC
TGAGTCGGCTGCCCTTTGCCATTCGCCGGATGAAAGCACTGCGTAAACTT
TATGTGTGCAGCAACGAACTAGAGTCCCTGCCCTCTGCTGTCG

BO07913.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:13:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6098-PA 1287 Lrr47-RA 1..877 17..893 4385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
Lrr47-RB 1874 CG6098-RB 87..968 12..893 4395 99.9 Plus
Lrr47-RA 1589 CG6098-RA 87..968 12..893 4395 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10517421..10517998 12..589 2875 99.8 Plus
2L 23513712 2L 10518058..10518363 588..893 1530 100 Plus
Blast to na_te.dros performed on 2015-02-12 15:39:03 has no hits.

BO07913.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:32:24 Download gff for BO07913.5prime
Subject Subject Range Query Range Percent Splice Strand
Lrr47-PA 1..877 17..893 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:20:28 Download gff for BO07913.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6098-PA 1..877 17..893 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:08:14 Download gff for BO07913.5prime
Subject Subject Range Query Range Percent Splice Strand
Lrr47-RA 87..968 12..893 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:20:09 Download gff for BO07913.5prime
Subject Subject Range Query Range Percent Splice Strand
Lrr47-RA 87..968 12..893 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:20:09 Download gff for BO07913.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10517421..10517998 12..589 99 -> Plus
2L 10518060..10518363 590..893 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:08:14 Download gff for BO07913.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10517421..10517998 12..589 99 -> Plus
arm_2L 10518060..10518363 590..893 100   Plus

BO07913.complete Sequence

1318 bp (1318 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630982

> BO07913.complete
GAAGTTATCAGTCGACATGAAGATTTTGTGCGAAGTTCAGGTGGTGAATC
GCGCCACCCAGACGAACAAAACGCCACGTCCCGTGAAATCCACACTGGCC
ATTGGCTACAAGCAAAGCGCCAGGGATGCGAATGGAAACACCAAGAAGGA
GCTGGAAATGGTGCTCTTTAGTGGACAAAACAAGACTGGAAATCGCTACA
AGGTCAAGGATAACATTCATGTCGTGCACACCAAGTTTGTGCTGGATGGG
AAGACCACCATTGGTTTCATACAGCCGCCAGATAACCTGCTTATTAAGTG
CGATCCTATCCAGCTGAAAGGATTCCTGCAGACCCTCAAGCTGGGCATGG
ATGGCAAGGACGCCATCAATTTGAGACTGAACATAAACGCCGCTACGGCA
ATTCCGCAGAAGGCACAGCCCCAGGTGCGCATGGTAATCAGCAAGCGGAG
CGAGTATCCCATCAAGGGATTTCCGCGCACCCTCAAATCGCTGACCATCA
ACAACAGCCAGCTAGTGAAGCTGAGCTTCGAGATATGCACCCTGCGCAAC
CTCACAAAGCTGGATGTCAGCGGTAACAAGCTGACCAAGATTCCCTCGGA
GCTGGGTCGTCTTCCGCTCACCTCGCTGCACCTGGGCAACAACTTACTGG
GTACTCAGAATGACTGGTGCTGGCTGCGGGGCACTAAGCTCTGTCAGTCG
CTCGGCGAGCTGGATCTGTCGGGCAACGGGCTGACTTACTTTCCACCTCC
GCTGGTTAAATTCGAGTCGCTTGTATCGCTGAATCTCAACAACAATCTGC
TGAGTCGGCTGCCCTTTGCCATTCGCCGGATGAAAGCACTGCGTAAACTT
TATGTGTGCAGCAACGAACTAGAGTCCCTGCCCTCTGCTGTCGAGGATCT
ACGGATCGACCTGTTGGATGTGTGGGGCAATTGCTTCAAGGAATTCAATG
CAGATGCCGCGCAGCAAATGTATCTGCAAAAGGCGGCATCTAATTCGCCG
CAACCTTTGTGGCTTTTGGGAGCTCGAGCTGTGGATAAGTATATGCTGCC
CTTGTCCGCGGGCTCTATTCCCGCTGTGCTAATAGATCTGATAAGGGAGG
CTCCCAGATGCCCGTGCGGCGAGCTCTGCTATGCCCAGCGCAAGGAGGAC
CTCTTCCAGCGCGTTGTTCAGCCGAAATTCATCACCGTTAAGAACCTCAC
ATACAGTCGTGAGCATCAGATCTACGCGGATGTGGTCCTCTGTGACTCTA
GGTGCAGTGCATCTGCTGAACTGAAGTTGCTCTTCAATATAATCTTTTCC
GCAAGCTTTCTAGACCAT

BO07913.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:30:46
Subject Length Description Subject Range Query Range Score Percent Strand
Lrr47-RB 1287 CG6098-PB 1..1284 17..1300 6420 100 Plus
Lrr47-RA 1287 CG6098-PA 1..1284 17..1300 6420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:30:47
Subject Length Description Subject Range Query Range Score Percent Strand
Lrr47-RB 1874 CG6098-RB 87..1375 12..1300 6430 99.9 Plus
Lrr47-RA 1589 CG6098-RA 87..1375 12..1300 6430 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10518058..10518770 588..1300 3565 100 Plus
2L 23513712 2L 10517421..10517998 12..589 2875 99.8 Plus
Blast to na_te.dros performed on 2014-11-27 20:30:45 has no hits.

BO07913.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:09 Download gff for BO07913.complete
Subject Subject Range Query Range Percent Splice Strand
Lrr47-RA 1..1287 17..1303 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:52 Download gff for BO07913.complete
Subject Subject Range Query Range Percent Splice Strand
Lrr47-RA 85..1373 12..1300 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:53 Download gff for BO07913.complete
Subject Subject Range Query Range Percent Splice Strand
Lrr47-RA 92..1375 17..1302 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:10 Download gff for BO07913.complete
Subject Subject Range Query Range Percent Splice Strand
Lrr47-RA 85..1373 12..1300 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:46 Download gff for BO07913.complete
Subject Subject Range Query Range Percent Splice Strand
Lrr47-RA 92..1375 17..1302 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:46 Download gff for BO07913.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10517426..10517998 17..589 100 -> Plus
2L 10518060..10518770 590..1302 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:53 Download gff for BO07913.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10517426..10517998 17..589 100 -> Plus
arm_2L 10518060..10518770 590..1302 99   Plus

BO07913.pep Sequence

Translation from 16 to 1318

> BO07913.pep
MKILCEVQVVNRATQTNKTPRPVKSTLAIGYKQSARDANGNTKKELEMVL
FSGQNKTGNRYKVKDNIHVVHTKFVLDGKTTIGFIQPPDNLLIKCDPIQL
KGFLQTLKLGMDGKDAINLRLNINAATAIPQKAQPQVRMVISKRSEYPIK
GFPRTLKSLTINNSQLVKLSFEICTLRNLTKLDVSGNKLTKIPSELGRLP
LTSLHLGNNLLGTQNDWCWLRGTKLCQSLGELDLSGNGLTYFPPPLVKFE
SLVSLNLNNNLLSRLPFAIRRMKALRKLYVCSNELESLPSAVEDLRIDLL
DVWGNCFKEFNADAAQQMYLQKAASNSPQPLWLLGARAVDKYMLPLSAGS
IPAVLIDLIREAPRCPCGELCYAQRKEDLFQRVVQPKFITVKNLTYSREH
QIYADVVLCDSRCSASAELKLLFNIIFSASFLDH

BO07913.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
Lrr47-PB 428 CG6098-PB 1..428 1..428 2209 100 Plus
Lrr47-PA 428 CG6098-PA 1..428 1..428 2209 100 Plus
CG32687-PB 377 CG32687-PB 23..224 120..296 164 27.2 Plus
CG32687-PA 377 CG32687-PA 23..224 120..296 164 27.2 Plus
scrib-PC 1247 CG43398-PC 192..329 148..289 162 37.1 Plus