Clone BO07915 Report

Search the DGRC for BO07915

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:79
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptB-H1-RA
Protein status:BO07915.pep: full length peptide match
Sequenced Size:1666

Clone Sequence Records

BO07915.3prime Sequence

911 bp (816 high quality bases) assembled on 2006-01-06

> BO07915.3prime
ATGGTCTAGAAAGCTTGCCACCTGGATCTGATCCTCGTCGTCCGACTGGG
AACAGCTGTCAACGGATCGTCCTGGCGGACTGCCCGGATTCAGCGTTGGA
CTCGGCGTCGATGGTGGCCTTGGTGGCGGCGAGGCGGATGCGGAATGGGC
CGGAATCGGTTTGACCAGGCCACTGGGCGGAGATCCTCCGCCCACCGAAG
GTGGTGGCGCTACCGGATGCGGTCCGCCCGGATTGGCAGCGGAGGCAGCC
GCAGCGGCACTCTGATAGTAGCTGCTCAGCGAGGACAGCGAACTGGAGGC
GGACAGGTGGGAGAAGGGTGCCGGACCCACGCCCACCCCGACGCCCACTC
CGACGGACGGAACGCCGGCGTATAGGTTGTAGGGCAGTGGCTTCTGCATG
GCGGCCGCAGCGGCCGCTTGACGGTAATAGATGTCTATGTTCGTGTGGGG
CGTGGCTCCGTGGGCGGCGCCGGCAGCGGCCGCATACGGCCAGGCGCCCA
GGTAAGGCGATCCGCCGTAAAGTCGCTGAAAGGCCGCGAAGTTTCCAGCC
TCTGCGAGGAGTTCCAGGCCCACTGCTGTTTGGCGCTTCCATTTGGTTCT
GCGGTTTTGGTACCAAGTTTTCACCTGGCAATCGCTCAGATCCAACTTGT
GGGCCAGCTCCTGGCGCTCCTGAACGCTAAGGTACTTCTGCCGCTCGAAG
GACTTCTCGAGCGTCTGCAGCTGGTGATCCGTGAAGGCGGTACGCGCCTT
TCGCTGCTTCTTGCTCAGACCGCTCATGTCGCTGGTGGAGCCGCTCTTGA
CACTGTTGCCATCGTCATCTTTACCGCCATTGCTACAAACGCTGTGATCG
TCCATGTTGCCGCTGTCGCAGTCCTCGTTCTCCTCGTGGTAATCGCTGCT
GTCGTCCAGAT

BO07915.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:13:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5529-PA 1635 B-H1-RA 740..1632 911..19 4465 100 Minus
CG5488-PA 1938 B-H2-RA 1129..1310 765..584 560 92.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
B-H1-RA 2719 CG5529-RA 956..1848 911..19 4465 100 Minus
B-H1-RB 2724 CG5529-RB 956..1853 911..19 4405 99.4 Minus
B-H2-RB 3142 CG5488-RB 1458..1840 765..389 960 83.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17401824..17402407 602..19 2920 100 Minus
X 23542271 X 17401464..17401693 828..599 1150 100 Minus
X 23542271 X 17320925..17321091 765..599 625 91.6 Minus
X 23542271 X 17398433..17398517 911..827 425 100 Minus
X 23542271 X 17322654..17322873 602..389 275 78 Minus
Blast to na_te.dros performed on 2015-02-12 10:07:35 has no hits.

BO07915.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:32:25 Download gff for BO07915.3prime
Subject Subject Range Query Range Percent Splice Strand
B-H1-PA 740..1635 16..911 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:20:29 Download gff for BO07915.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5529-PA 740..1635 16..911 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:46:48 Download gff for BO07915.3prime
Subject Subject Range Query Range Percent Splice Strand
B-H1-RA 956..1853 13..911 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:05:43 Download gff for BO07915.3prime
Subject Subject Range Query Range Percent Splice Strand
B-H1-RA 956..1853 13..911 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:05:43 Download gff for BO07915.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17398433..17398516 828..911 100 -> Minus
X 17401465..17401693 599..827 100 -> Minus
X 17401828..17402412 13..598 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:46:48 Download gff for BO07915.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17292466..17292549 828..911 100 -> Minus
arm_X 17295498..17295726 599..827 100 -> Minus
arm_X 17295861..17296445 13..598 99   Minus

BO07915.5prime Sequence

901 bp (850 high quality bases) assembled on 2006-01-06

> BO07915.5prime
GAAGTTATCAGTCGACATGAAAGACTCGATGAGCATACTCACCCAAACGC
CCAGCGAGCCAAACGCAGCGCATCCCCAGCTGCACCACCACCTCAGTACG
CTGCAGCAGCAGCACCACCAGCACCACCTCCACTACGGCCTGCAGCCACC
GGCGGTGGCTCACAGCATCCATAGCACCACCACCATGTCCTCCGGCGGCA
GCACCACCACCGCCTCGGGCATCGGTAAGCCCAATCGGTCCCGCTTCATG
ATCAACGACATTCTGGCGGGCAGTGCGGCGGCCGCTTTCTACAAGCAGCA
GCAGCATCACCAGCAGTTGCACCACCACAACAACAACAACAATTCGGGCT
CCAGCGGCGGCAGCAGTCCCGCTCACAGCAACAACAACAACAACATTAAT
GGCGATAACTGTGAGGCATCCAATGTTGCTGGCGTCGGTGTGCTGCCATC
TGCCCTGCACCACCCACAACCACATCCGCCCACGCATCCGCACACACATC
CGCATGCGCTAATGCATCCGCACGGCAAGCTGGGGCACTTTCCACCCACC
GCCGGCGGCAATGGGTTAAACGTGGCTCAATATGCGGCGGCCATGCAACA
GCACTATGCCGCTGCTGCTGCCGCGGCTGCTGCGCGCAACAATGCAGCTG
CTGCTGCAGCCGCCGCTGCTGCCGCTGCAGCTGCTGGTGTAGCCGCACCA
CCCGTCGACGGGGGAGTGGATGGCGGGGTGGGGCTGGCGCCACCGGCGGG
CGGCGATCTGGACGACAGCAGCGATTACCACGAGGAGAACGAGGACTGCG
ACAGCGGCAACATGGACGATCACAGCGTTTGTAGCAATGGCGGTAAAGAT
GACGATGGCAACAGTGTCAAGAGCGGCTCCACCAGCGACATGAGCGGTCT
G

BO07915.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG5529-PA 1635 B-H1-RA 1..885 17..901 4425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:33:15
Subject Length Description Subject Range Query Range Score Percent Strand
B-H1-RA 2719 CG5529-RA 217..1101 17..901 4425 100 Plus
B-H1-RB 2724 CG5529-RB 217..1106 17..901 4365 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:33:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17397694..17398517 17..840 4120 100 Plus
X 23542271 X 17401464..17401526 839..901 315 100 Plus
Blast to na_te.dros performed 2015-02-04 20:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2291..2407 280..395 231 67.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2353..2455 294..395 188 66 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2383..2492 294..399 188 67.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2329..2448 294..409 184 65 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3261..3382 276..399 183 64.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2853 169..702 164 53.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2775..2874 289..391 147 63.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2368..2681 32..343 141 51.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1555..1608 294..345 121 72.2 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 951..1009 269..327 115 66.1 Plus

BO07915.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:32:26 Download gff for BO07915.5prime
Subject Subject Range Query Range Percent Splice Strand
B-H1-PA 1..885 17..901 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:20:31 Download gff for BO07915.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5529-PA 1..885 17..901 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:26:47 Download gff for BO07915.5prime
Subject Subject Range Query Range Percent Splice Strand
B-H1-RA 211..1101 10..901 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:51:17 Download gff for BO07915.5prime
Subject Subject Range Query Range Percent Splice Strand
B-H1-RA 211..1101 10..901 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:51:17 Download gff for BO07915.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17397688..17398516 10..839 99 -> Plus
X 17401465..17401526 840..901 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:26:47 Download gff for BO07915.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17291721..17292549 10..839 99 -> Plus
arm_X 17295498..17295559 840..901 100   Plus

BO07915.complete Sequence

1666 bp (1666 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630983

> BO07915.complete
GAAGTTATCAGTCGACATGAAAGACTCGATGAGCATACTCACCCAAACGC
CCAGCGAGCCAAACGCAGCGCATCCCCAGCTGCACCACCACCTCAGTACG
CTGCAGCAGCAGCACCACCAGCACCACCTCCACTACGGCCTGCAGCCACC
GGCGGTGGCTCACAGCATCCATAGCACCACCACCATGTCCTCCGGCGGCA
GCACCACCACCGCCTCGGGCATCGGTAAGCCCAATCGGTCCCGCTTCATG
ATCAACGACATTCTGGCGGGCAGTGCGGCGGCCGCTTTCTACAAGCAGCA
GCAGCATCACCAGCAGTTGCACCACCACAACAACAACAACAATTCGGGCT
CCAGCGGCGGCAGCAGTCCCGCTCACAGCAACAACAACAACAACATTAAT
GGCGATAACTGTGAGGCATCCAATGTTGCTGGCGTCGGTGTGCTGCCATC
TGCCCTGCACCACCCACAACCACATCCGCCCACGCATCCGCACACACATC
CGCATGCGCTAATGCATCCGCACGGCAAGCTGGGGCACTTTCCACCCACC
GCCGGCGGCAATGGGTTAAACGTGGCTCAATATGCGGCGGCCATGCAACA
GCACTATGCCGCTGCTGCTGCCGCGGCTGCTGCGCGCAACAATGCAGCTG
CTGCTGCAGCCGCCGCTGCTGCCGCTGCAGCTGCTGGTGTAGCCGCACCA
CCCGTCGACGGGGGAGTGGATGGCGGGGTGGGGCTGGCGCCACCGGCGGG
CGGCGATCTGGACGACAGCAGCGATTACCACGAGGAGAACGAGGACTGCG
ACAGCGGCAACATGGACGATCACAGCGTTTGTAGCAATGGCGGTAAAGAT
GACGATGGCAACAGTGTCAAGAGCGGCTCCACCAGCGACATGAGCGGTCT
GAGCAAGAAGCAGCGAAAGGCGCGTACCGCCTTCACGGATCACCAGCTGC
AGACGCTCGAGAAGTCCTTCGAGCGGCAGAAGTACCTTAGCGTTCAGGAG
CGCCAGGAGCTGGCCCACAAGTTGGATCTGAGCGATTGCCAGGTGAAAAC
TTGGTACCAAAACCGCAGAACCAAATGGAAGCGCCAAACAGCAGTGGGCC
TGGAACTCCTCGCAGAGGCTGGAAACTTCGCGGCCTTTCAGCGACTTTAC
GGCGGATCGCCTTACCTGGGCGCCTGGCCGTATGCGGCCGCTGCCGGCGC
CGCCCACGGAGCCACGCCCCACACGAACATAGACATCTATTACCGTCAAG
CGGCCGCTGCGGCCGCCATGCAGAAGCCACTGCCCTACAACCTATACGCC
GGCGTTCCGTCCGTCGGAGTGGGCGTCGGGGTGGGCGTGGGTCCGGCACC
CTTCTCCCACCTGTCCGCCTCCAGTTCGCTGTCCTCGCTGAGCAGCTACT
ATCAGAGTGCCGCTGCGGCTGCCTCCGCTGCCAATCCGGGCGGACCGCAT
CCGGTAGCGCCACCACCTTCGGTGGGCGGAGGATCTCCGCCCAGTGGCCT
GGTCAAACCGATTCCGGCCCATTCCGCATCCGCCTCGCCGCCACCAAGGC
CACCATCGACGCCGAGTCCAACGCTGAATCCGGGCAGTCCGCCAGGACGA
TCCGTTGACAGCTGTTCCCAGTCGGACGACGAGGATCAGATCCAGGTGGC
AAGCTTTCTAGACCAT

BO07915.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
B-H1-RA 1635 CG5529-PA 1..1632 17..1648 8160 100 Plus
B-H1-RB 882 CG5529-PB 1..882 17..893 4300 99.4 Plus
B-H2-RB 912 CG5488-PB 103..485 902..1278 880 83.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
B-H1-RA 2719 CG5529-RA 217..1848 17..1648 8160 100 Plus
B-H1-RB 2724 CG5529-RB 217..1853 17..1648 8075 99.7 Plus
B-H2-RB 3142 CG5488-RB 1458..1840 902..1278 880 83.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17397694..17398517 17..840 4120 100 Plus
X 23542271 X 17401824..17402407 1065..1648 2920 100 Plus
X 23542271 X 17401464..17401693 839..1068 1150 100 Plus
X 23542271 X 17320925..17321091 902..1068 625 91.6 Plus
X 23542271 X 17322654..17322873 1065..1278 275 78 Plus
Blast to na_te.dros performed 2014-11-26 14:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2291..2407 280..395 231 67.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2353..2455 294..395 188 66 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2383..2492 294..399 188 67.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2329..2448 294..409 184 65 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3261..3382 276..399 183 64.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2853 169..702 164 53.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2368..2681 32..343 141 51.6 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 951..1009 269..327 115 66.1 Plus

BO07915.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:06 Download gff for BO07915.complete
Subject Subject Range Query Range Percent Splice Strand
B-H1-RA 1..1635 17..1651 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:27 Download gff for BO07915.complete
Subject Subject Range Query Range Percent Splice Strand
B-H1-RA 188..1830 10..1654 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:14 Download gff for BO07915.complete
Subject Subject Range Query Range Percent Splice Strand
B-H1-RA 217..1848 17..1650 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:07 Download gff for BO07915.complete
Subject Subject Range Query Range Percent Splice Strand
B-H1-RA 188..1830 10..1654 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:36 Download gff for BO07915.complete
Subject Subject Range Query Range Percent Splice Strand
B-H1-RA 217..1848 17..1650 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:36 Download gff for BO07915.complete
Subject Subject Range Query Range Percent Splice Strand
X 17397694..17398516 17..839 100 -> Plus
X 17401465..17401693 840..1068 100 -> Plus
X 17401828..17402407 1069..1650 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:14 Download gff for BO07915.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17295498..17295726 840..1068 100 -> Plus
arm_X 17291727..17292549 17..839 100 -> Plus
arm_X 17295861..17296440 1069..1650 99   Plus

BO07915.pep Sequence

Translation from 16 to 1666

> BO07915.pep
MKDSMSILTQTPSEPNAAHPQLHHHLSTLQQQHHQHHLHYGLQPPAVAHS
IHSTTTMSSGGSTTTASGIGKPNRSRFMINDILAGSAAAAFYKQQQHHQQ
LHHHNNNNNSGSSGGSSPAHSNNNNNINGDNCEASNVAGVGVLPSALHHP
QPHPPTHPHTHPHALMHPHGKLGHFPPTAGGNGLNVAQYAAAMQQHYAAA
AAAAAARNNAAAAAAAAAAAAAAGVAAPPVDGGVDGGVGLAPPAGGDLDD
SSDYHEENEDCDSGNMDDHSVCSNGGKDDDGNSVKSGSTSDMSGLSKKQR
KARTAFTDHQLQTLEKSFERQKYLSVQERQELAHKLDLSDCQVKTWYQNR
RTKWKRQTAVGLELLAEAGNFAAFQRLYGGSPYLGAWPYAAAAGAAHGAT
PHTNIDIYYRQAAAAAAMQKPLPYNLYAGVPSVGVGVGVGVGPAPFSHLS
ASSSLSSLSSYYQSAAAAASAANPGGPHPVAPPPSVGGGSPPSGLVKPIP
AHSASASPPPRPPSTPSPTLNPGSPPGRSVDSCSQSDDEDQIQVASFLDH

BO07915.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:01
Subject Length Description Subject Range Query Range Score Percent Strand
B-H1-PA 544 CG5529-PA 1..544 1..544 2902 100 Plus
B-H1-PB 293 CG5529-PB 1..275 1..275 1492 100 Plus
B-H2-PA 645 CG5488-PA 95..617 11..541 744 39.8 Plus
B-H2-PB 303 CG5488-PB 4..275 273..541 692 58 Plus
CG11085-PA 295 CG11085-PA 104..289 210..424 258 35.8 Plus