Clone Sequence Records
BO07915.3prime Sequence
911 bp (816 high quality bases) assembled on 2006-01-06
> BO07915.3prime
ATGGTCTAGAAAGCTTGCCACCTGGATCTGATCCTCGTCGTCCGACTGGG
AACAGCTGTCAACGGATCGTCCTGGCGGACTGCCCGGATTCAGCGTTGGA
CTCGGCGTCGATGGTGGCCTTGGTGGCGGCGAGGCGGATGCGGAATGGGC
CGGAATCGGTTTGACCAGGCCACTGGGCGGAGATCCTCCGCCCACCGAAG
GTGGTGGCGCTACCGGATGCGGTCCGCCCGGATTGGCAGCGGAGGCAGCC
GCAGCGGCACTCTGATAGTAGCTGCTCAGCGAGGACAGCGAACTGGAGGC
GGACAGGTGGGAGAAGGGTGCCGGACCCACGCCCACCCCGACGCCCACTC
CGACGGACGGAACGCCGGCGTATAGGTTGTAGGGCAGTGGCTTCTGCATG
GCGGCCGCAGCGGCCGCTTGACGGTAATAGATGTCTATGTTCGTGTGGGG
CGTGGCTCCGTGGGCGGCGCCGGCAGCGGCCGCATACGGCCAGGCGCCCA
GGTAAGGCGATCCGCCGTAAAGTCGCTGAAAGGCCGCGAAGTTTCCAGCC
TCTGCGAGGAGTTCCAGGCCCACTGCTGTTTGGCGCTTCCATTTGGTTCT
GCGGTTTTGGTACCAAGTTTTCACCTGGCAATCGCTCAGATCCAACTTGT
GGGCCAGCTCCTGGCGCTCCTGAACGCTAAGGTACTTCTGCCGCTCGAAG
GACTTCTCGAGCGTCTGCAGCTGGTGATCCGTGAAGGCGGTACGCGCCTT
TCGCTGCTTCTTGCTCAGACCGCTCATGTCGCTGGTGGAGCCGCTCTTGA
CACTGTTGCCATCGTCATCTTTACCGCCATTGCTACAAACGCTGTGATCG
TCCATGTTGCCGCTGTCGCAGTCCTCGTTCTCCTCGTGGTAATCGCTGCT
GTCGTCCAGAT
BO07915.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:13:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5529-PA | 1635 | B-H1-RA | 740..1632 | 911..19 | 4465 | 100 | Minus |
CG5488-PA | 1938 | B-H2-RA | 1129..1310 | 765..584 | 560 | 92.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:07:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
B-H1-RA | 2719 | CG5529-RA | 956..1848 | 911..19 | 4465 | 100 | Minus |
B-H1-RB | 2724 | CG5529-RB | 956..1853 | 911..19 | 4405 | 99.4 | Minus |
B-H2-RB | 3142 | CG5488-RB | 1458..1840 | 765..389 | 960 | 83.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:07:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17401824..17402407 | 602..19 | 2920 | 100 | Minus |
X | 23542271 | X | 17401464..17401693 | 828..599 | 1150 | 100 | Minus |
X | 23542271 | X | 17320925..17321091 | 765..599 | 625 | 91.6 | Minus |
X | 23542271 | X | 17398433..17398517 | 911..827 | 425 | 100 | Minus |
X | 23542271 | X | 17322654..17322873 | 602..389 | 275 | 78 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:07:35 has no hits.
BO07915.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:32:25 Download gff for
BO07915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B-H1-PA | 740..1635 | 16..911 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:20:29 Download gff for
BO07915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5529-PA | 740..1635 | 16..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:46:48 Download gff for
BO07915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B-H1-RA | 956..1853 | 13..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:05:43 Download gff for
BO07915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B-H1-RA | 956..1853 | 13..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:05:43 Download gff for
BO07915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17398433..17398516 | 828..911 | 100 | -> | Minus |
X | 17401465..17401693 | 599..827 | 100 | -> | Minus |
X | 17401828..17402412 | 13..598 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:46:48 Download gff for
BO07915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17292466..17292549 | 828..911 | 100 | -> | Minus |
arm_X | 17295498..17295726 | 599..827 | 100 | -> | Minus |
arm_X | 17295861..17296445 | 13..598 | 99 | | Minus |
BO07915.5prime Sequence
901 bp (850 high quality bases) assembled on 2006-01-06
> BO07915.5prime
GAAGTTATCAGTCGACATGAAAGACTCGATGAGCATACTCACCCAAACGC
CCAGCGAGCCAAACGCAGCGCATCCCCAGCTGCACCACCACCTCAGTACG
CTGCAGCAGCAGCACCACCAGCACCACCTCCACTACGGCCTGCAGCCACC
GGCGGTGGCTCACAGCATCCATAGCACCACCACCATGTCCTCCGGCGGCA
GCACCACCACCGCCTCGGGCATCGGTAAGCCCAATCGGTCCCGCTTCATG
ATCAACGACATTCTGGCGGGCAGTGCGGCGGCCGCTTTCTACAAGCAGCA
GCAGCATCACCAGCAGTTGCACCACCACAACAACAACAACAATTCGGGCT
CCAGCGGCGGCAGCAGTCCCGCTCACAGCAACAACAACAACAACATTAAT
GGCGATAACTGTGAGGCATCCAATGTTGCTGGCGTCGGTGTGCTGCCATC
TGCCCTGCACCACCCACAACCACATCCGCCCACGCATCCGCACACACATC
CGCATGCGCTAATGCATCCGCACGGCAAGCTGGGGCACTTTCCACCCACC
GCCGGCGGCAATGGGTTAAACGTGGCTCAATATGCGGCGGCCATGCAACA
GCACTATGCCGCTGCTGCTGCCGCGGCTGCTGCGCGCAACAATGCAGCTG
CTGCTGCAGCCGCCGCTGCTGCCGCTGCAGCTGCTGGTGTAGCCGCACCA
CCCGTCGACGGGGGAGTGGATGGCGGGGTGGGGCTGGCGCCACCGGCGGG
CGGCGATCTGGACGACAGCAGCGATTACCACGAGGAGAACGAGGACTGCG
ACAGCGGCAACATGGACGATCACAGCGTTTGTAGCAATGGCGGTAAAGAT
GACGATGGCAACAGTGTCAAGAGCGGCTCCACCAGCGACATGAGCGGTCT
G
BO07915.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:13:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5529-PA | 1635 | B-H1-RA | 1..885 | 17..901 | 4425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:33:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
B-H1-RA | 2719 | CG5529-RA | 217..1101 | 17..901 | 4425 | 100 | Plus |
B-H1-RB | 2724 | CG5529-RB | 217..1106 | 17..901 | 4365 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:33:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17397694..17398517 | 17..840 | 4120 | 100 | Plus |
X | 23542271 | X | 17401464..17401526 | 839..901 | 315 | 100 | Plus |
Blast to na_te.dros performed 2015-02-04 20:33:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2407 | 280..395 | 231 | 67.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2353..2455 | 294..395 | 188 | 66 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2383..2492 | 294..399 | 188 | 67.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2448 | 294..409 | 184 | 65 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3261..3382 | 276..399 | 183 | 64.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2853 | 169..702 | 164 | 53.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2775..2874 | 289..391 | 147 | 63.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2368..2681 | 32..343 | 141 | 51.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1555..1608 | 294..345 | 121 | 72.2 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 951..1009 | 269..327 | 115 | 66.1 | Plus |
BO07915.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:32:26 Download gff for
BO07915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B-H1-PA | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:20:31 Download gff for
BO07915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5529-PA | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:26:47 Download gff for
BO07915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B-H1-RA | 211..1101 | 10..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:51:17 Download gff for
BO07915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B-H1-RA | 211..1101 | 10..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:51:17 Download gff for
BO07915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17397688..17398516 | 10..839 | 99 | -> | Plus |
X | 17401465..17401526 | 840..901 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:26:47 Download gff for
BO07915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17291721..17292549 | 10..839 | 99 | -> | Plus |
arm_X | 17295498..17295559 | 840..901 | 100 | | Plus |
BO07915.complete Sequence
1666 bp (1666 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630983
> BO07915.complete
GAAGTTATCAGTCGACATGAAAGACTCGATGAGCATACTCACCCAAACGC
CCAGCGAGCCAAACGCAGCGCATCCCCAGCTGCACCACCACCTCAGTACG
CTGCAGCAGCAGCACCACCAGCACCACCTCCACTACGGCCTGCAGCCACC
GGCGGTGGCTCACAGCATCCATAGCACCACCACCATGTCCTCCGGCGGCA
GCACCACCACCGCCTCGGGCATCGGTAAGCCCAATCGGTCCCGCTTCATG
ATCAACGACATTCTGGCGGGCAGTGCGGCGGCCGCTTTCTACAAGCAGCA
GCAGCATCACCAGCAGTTGCACCACCACAACAACAACAACAATTCGGGCT
CCAGCGGCGGCAGCAGTCCCGCTCACAGCAACAACAACAACAACATTAAT
GGCGATAACTGTGAGGCATCCAATGTTGCTGGCGTCGGTGTGCTGCCATC
TGCCCTGCACCACCCACAACCACATCCGCCCACGCATCCGCACACACATC
CGCATGCGCTAATGCATCCGCACGGCAAGCTGGGGCACTTTCCACCCACC
GCCGGCGGCAATGGGTTAAACGTGGCTCAATATGCGGCGGCCATGCAACA
GCACTATGCCGCTGCTGCTGCCGCGGCTGCTGCGCGCAACAATGCAGCTG
CTGCTGCAGCCGCCGCTGCTGCCGCTGCAGCTGCTGGTGTAGCCGCACCA
CCCGTCGACGGGGGAGTGGATGGCGGGGTGGGGCTGGCGCCACCGGCGGG
CGGCGATCTGGACGACAGCAGCGATTACCACGAGGAGAACGAGGACTGCG
ACAGCGGCAACATGGACGATCACAGCGTTTGTAGCAATGGCGGTAAAGAT
GACGATGGCAACAGTGTCAAGAGCGGCTCCACCAGCGACATGAGCGGTCT
GAGCAAGAAGCAGCGAAAGGCGCGTACCGCCTTCACGGATCACCAGCTGC
AGACGCTCGAGAAGTCCTTCGAGCGGCAGAAGTACCTTAGCGTTCAGGAG
CGCCAGGAGCTGGCCCACAAGTTGGATCTGAGCGATTGCCAGGTGAAAAC
TTGGTACCAAAACCGCAGAACCAAATGGAAGCGCCAAACAGCAGTGGGCC
TGGAACTCCTCGCAGAGGCTGGAAACTTCGCGGCCTTTCAGCGACTTTAC
GGCGGATCGCCTTACCTGGGCGCCTGGCCGTATGCGGCCGCTGCCGGCGC
CGCCCACGGAGCCACGCCCCACACGAACATAGACATCTATTACCGTCAAG
CGGCCGCTGCGGCCGCCATGCAGAAGCCACTGCCCTACAACCTATACGCC
GGCGTTCCGTCCGTCGGAGTGGGCGTCGGGGTGGGCGTGGGTCCGGCACC
CTTCTCCCACCTGTCCGCCTCCAGTTCGCTGTCCTCGCTGAGCAGCTACT
ATCAGAGTGCCGCTGCGGCTGCCTCCGCTGCCAATCCGGGCGGACCGCAT
CCGGTAGCGCCACCACCTTCGGTGGGCGGAGGATCTCCGCCCAGTGGCCT
GGTCAAACCGATTCCGGCCCATTCCGCATCCGCCTCGCCGCCACCAAGGC
CACCATCGACGCCGAGTCCAACGCTGAATCCGGGCAGTCCGCCAGGACGA
TCCGTTGACAGCTGTTCCCAGTCGGACGACGAGGATCAGATCCAGGTGGC
AAGCTTTCTAGACCAT
BO07915.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:51:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
B-H1-RA | 1635 | CG5529-PA | 1..1632 | 17..1648 | 8160 | 100 | Plus |
B-H1-RB | 882 | CG5529-PB | 1..882 | 17..893 | 4300 | 99.4 | Plus |
B-H2-RB | 912 | CG5488-PB | 103..485 | 902..1278 | 880 | 83.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:51:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
B-H1-RA | 2719 | CG5529-RA | 217..1848 | 17..1648 | 8160 | 100 | Plus |
B-H1-RB | 2724 | CG5529-RB | 217..1853 | 17..1648 | 8075 | 99.7 | Plus |
B-H2-RB | 3142 | CG5488-RB | 1458..1840 | 902..1278 | 880 | 83.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:51:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17397694..17398517 | 17..840 | 4120 | 100 | Plus |
X | 23542271 | X | 17401824..17402407 | 1065..1648 | 2920 | 100 | Plus |
X | 23542271 | X | 17401464..17401693 | 839..1068 | 1150 | 100 | Plus |
X | 23542271 | X | 17320925..17321091 | 902..1068 | 625 | 91.6 | Plus |
X | 23542271 | X | 17322654..17322873 | 1065..1278 | 275 | 78 | Plus |
Blast to na_te.dros performed 2014-11-26 14:51:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2407 | 280..395 | 231 | 67.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2353..2455 | 294..395 | 188 | 66 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2383..2492 | 294..399 | 188 | 67.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2448 | 294..409 | 184 | 65 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3261..3382 | 276..399 | 183 | 64.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2853 | 169..702 | 164 | 53.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2368..2681 | 32..343 | 141 | 51.6 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 951..1009 | 269..327 | 115 | 66.1 | Plus |
BO07915.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:06 Download gff for
BO07915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B-H1-RA | 1..1635 | 17..1651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:27 Download gff for
BO07915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B-H1-RA | 188..1830 | 10..1654 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:14 Download gff for
BO07915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B-H1-RA | 217..1848 | 17..1650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:07 Download gff for
BO07915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B-H1-RA | 188..1830 | 10..1654 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:36 Download gff for
BO07915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B-H1-RA | 217..1848 | 17..1650 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:36 Download gff for
BO07915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17397694..17398516 | 17..839 | 100 | -> | Plus |
X | 17401465..17401693 | 840..1068 | 100 | -> | Plus |
X | 17401828..17402407 | 1069..1650 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:14 Download gff for
BO07915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17295498..17295726 | 840..1068 | 100 | -> | Plus |
arm_X | 17291727..17292549 | 17..839 | 100 | -> | Plus |
arm_X | 17295861..17296440 | 1069..1650 | 99 | | Plus |
BO07915.pep Sequence
Translation from 16 to 1666
> BO07915.pep
MKDSMSILTQTPSEPNAAHPQLHHHLSTLQQQHHQHHLHYGLQPPAVAHS
IHSTTTMSSGGSTTTASGIGKPNRSRFMINDILAGSAAAAFYKQQQHHQQ
LHHHNNNNNSGSSGGSSPAHSNNNNNINGDNCEASNVAGVGVLPSALHHP
QPHPPTHPHTHPHALMHPHGKLGHFPPTAGGNGLNVAQYAAAMQQHYAAA
AAAAAARNNAAAAAAAAAAAAAAGVAAPPVDGGVDGGVGLAPPAGGDLDD
SSDYHEENEDCDSGNMDDHSVCSNGGKDDDGNSVKSGSTSDMSGLSKKQR
KARTAFTDHQLQTLEKSFERQKYLSVQERQELAHKLDLSDCQVKTWYQNR
RTKWKRQTAVGLELLAEAGNFAAFQRLYGGSPYLGAWPYAAAAGAAHGAT
PHTNIDIYYRQAAAAAAMQKPLPYNLYAGVPSVGVGVGVGVGPAPFSHLS
ASSSLSSLSSYYQSAAAAASAANPGGPHPVAPPPSVGGGSPPSGLVKPIP
AHSASASPPPRPPSTPSPTLNPGSPPGRSVDSCSQSDDEDQIQVASFLDH
BO07915.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
B-H1-PA | 544 | CG5529-PA | 1..544 | 1..544 | 2902 | 100 | Plus |
B-H1-PB | 293 | CG5529-PB | 1..275 | 1..275 | 1492 | 100 | Plus |
B-H2-PA | 645 | CG5488-PA | 95..617 | 11..541 | 744 | 39.8 | Plus |
B-H2-PB | 303 | CG5488-PB | 4..275 | 273..541 | 692 | 58 | Plus |
CG11085-PA | 295 | CG11085-PA | 104..289 | 210..424 | 258 | 35.8 | Plus |