Clone BO07916 Report

Search the DGRC for BO07916

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:79
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptIpk1-RA
Protein status:BO07916.pep: validated full length
Sequenced Size:1897

Clone Sequence Records

BO07916.3prime Sequence

885 bp (814 high quality bases) assembled on 2006-01-06

> BO07916.3prime
ATGGTCTAGAAAGCTTGCTCTGCAATTGCCAAGGTTCTCTGGGGGGCAGG
CAGAATAAACAAACCCAAACGGACAGAGACTGAGTAGTTTGGGCAGCAGT
TTGATTGGTTGGCTTACCTTTACCAGCAATTGCAAATTCAAAATTTTTTG
CAGCACACAATTTTTTGGTAAGCGAAATATTTCCGTTTTGTTGTTTTGCG
CTTGAGTTTGATTCGCAGGCTCATTTCGATTCAGTTTTTGGCTTTCATTC
TGATTCACGTTGCGACTTGTCGTACTAGCAGCCTCAGCCGGAGTTTCCGG
TTCCGTTTTTGTTTCCGTTCGACCTGAAGTTGCCATTGCCGTAGCCGTTG
CCGTTGCCGTTGCCGTTGCCAACACATTGCCGGACAGTTGGCTGCTCGAT
GCTGGTCCTGCTGCCATCGAGGTGGCTGCCTGTCTAGTTATTGTTGTTTC
CACTCTGGCCACTTTTGTGTACCTTTGGGTCGTGGCTGTTGCAGCAGCTG
CTCTTGTCCGCGTCGAGGATTGACCGGCAGTGACAACAGGGGCGGCTGCC
CTGCCTCCGAGTGGCAGGACAACATTAGCGGCGCCAATTCCAGCAGCTCC
GGCCTTTGTCTCCGTCGCCGCAATAGAAACGCGACTCTGATTCAGCTGCT
CCGGCTCCGGCTGCTCCTGCTGCTGCTTCTGGCTCTGATTGGAGCCCTCT
GCTCGTTTGGATTCCGGGTGCTCGTATTCCCTTAGCAGACAGGCCACCAG
CAAATGTTTTATAAGCACCATAATTTCACCGGGAAAGACACGCGAGCTCA
ATTCATCGAAGGAAATCGAATTCGCGTGATCGCCATAAATTAAATTGCTG
TTCTGAAACACACGTAAATTATTTTGCGGGCAGGC

BO07916.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG30295-PA 1866 Ipk1-RA 997..1863 885..19 4335 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:38:04
Subject Length Description Subject Range Query Range Score Percent Strand
Ipk1-RA 2472 CG30295-RA 1464..2330 885..19 4335 100 Minus
Ipk1-RC 2633 CG30295-RC 1464..2231 885..118 3840 100 Minus
Ipk1-RD 1825 CG30295-RD 653..1420 885..118 3840 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20877617..20878320 722..19 3520 100 Minus
2R 25286936 2R 20876515..20876621 885..779 535 100 Minus
2R 25286936 2R 20877254..20877312 779..721 295 100 Minus
Blast to na_te.dros performed on 2015-02-13 05:38:03 has no hits.

BO07916.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:32:27 Download gff for BO07916.3prime
Subject Subject Range Query Range Percent Splice Strand
Ipk1-PA 997..1866 18..885 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:20:32 Download gff for BO07916.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30295-PA 997..1866 18..885 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:05:32 Download gff for BO07916.3prime
Subject Subject Range Query Range Percent Splice Strand
Ipk1-RA 1464..2335 11..885 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:53:01 Download gff for BO07916.3prime
Subject Subject Range Query Range Percent Splice Strand
Ipk1-RA 1464..2335 11..885 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:53:01 Download gff for BO07916.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20876515..20876621 779..885 100 -> Minus
2R 20877255..20877312 721..778 100 -> Minus
2R 20877619..20878325 11..720 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:05:32 Download gff for BO07916.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16764020..16764126 779..885 100 -> Minus
arm_2R 16764760..16764817 721..778 100 -> Minus
arm_2R 16765124..16765830 11..720 99   Minus

BO07916.5prime Sequence

845 bp (806 high quality bases) assembled on 2006-01-06

> BO07916.5prime
GAAGTTATCAGTCGACATGACAGCCGAACGAGGACCCCGCTCCCCGGGAA
CGGGGCAAAAACTAAGGCTTAGAGCCACTGAGCCAATGCCACAGTGGACG
GCCAAAAATCTGCACGCCCTGCTGGATCTGCCCGCGGCGATGGAACTGCG
CCAAATTGAGTTGATCTATCGGGCGGAGGGTAATGCAAATTTGGTGCTCG
CCCTGCCGCAATTTAAAAAAGTTTTACGTTTGCCAAAAATGATATCCAGC
AGACTGCGCCAGGCGGCGCACCAGCGGCACGAGCTGGCGGATGAGGTTGC
TCGGCCGGAAGGGCAGCGTGTCTCATCCGAAAGAGCTGGAACTGAAAATG
CTGGCGACTTGACAATGCCGGATTTTATGGCTTATATCGGGATAATGCGC
CGTCTATTAGGAAATGAGTTTGTCTGCGGAGCGGATATTGTTGCCATACC
AAAGGAAGACGATAGATTCTGGATAAACGAGCATATACGCGCCCAAAGAC
CGGTTTCGCGTCTGGATAAGGAATTTGTGGGGCCATTCGGCCTGCTGCTG
CCAGATGTGACCCAATTGCCTGCCACGTTCGATGTTTTACTTGCCAATTT
ACAGGCAAAGGGCACAACAGGAGATGAAAGTGGAGCTGCAGCGGGCGTAG
GAGATGGCGGTGGCGTTGGCCGTGGAGCAGGAACAAGGACGAAAAACAGG
AGCGCTGTCCGTCGTCTGGGCGATACATATGCCATCGAAATAAAACCCAA
ACAAGGCTGGCTTCAGTTGGCAAGTGATGTCAACGATTTATTTGATTTAA
TGCCATCGGGGGCAGTGACAAAGCCAAAGGAGACGACCTGCAATC

BO07916.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG30295-PA 1866 Ipk1-RA 1..829 17..845 4145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:29:54
Subject Length Description Subject Range Query Range Score Percent Strand
Ipk1-RC 2633 CG30295-RC 467..1296 16..845 4150 100 Plus
Ipk1-RB 2636 CG30295-RB 467..1296 16..845 4150 100 Plus
Ipk1-RA 2472 CG30295-RA 467..1296 16..845 4150 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20871671..20872005 16..350 1675 100 Plus
2R 25286936 2R 20875231..20875478 598..845 1225 99.6 Plus
2R 25286936 2R 20872539..20872692 350..503 770 100 Plus
2R 25286936 2R 20873650..20873752 503..605 515 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:29:50 has no hits.

BO07916.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:32:28 Download gff for BO07916.5prime
Subject Subject Range Query Range Percent Splice Strand
Ipk1-PA 1..829 17..845 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:20:33 Download gff for BO07916.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30295-PA 1..829 17..845 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:09:31 Download gff for BO07916.5prime
Subject Subject Range Query Range Percent Splice Strand
Ipk1-RA 462..1296 9..845 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:27:20 Download gff for BO07916.5prime
Subject Subject Range Query Range Percent Splice Strand
Ipk1-RA 462..1296 9..845 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:27:20 Download gff for BO07916.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20871666..20872005 9..350 99 -> Plus
2R 20872540..20872692 351..503 100 -> Plus
2R 20873651..20873751 504..604 100 -> Plus
2R 20875238..20875478 605..845 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:09:31 Download gff for BO07916.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16759171..16759510 9..350 99 -> Plus
arm_2R 16760045..16760197 351..503 100 -> Plus
arm_2R 16761156..16761256 504..604 100 -> Plus
arm_2R 16762743..16762983 605..845 100   Plus

BO07916.complete Sequence

1897 bp (1897 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ630984

> BO07916.complete
GAAGTTATCAGTCGACATGACAGCCGAACGAGGACCCCGCTCCCCGGGAA
CGGGGCAAAAACTAAGGCTTAGAGCCACTGAGCCAATGCCACAGTGGACG
GCCAAAAATCTGCACGCCCTGCTGGATCTGCCCGCGGCGATGGAACTGCG
CCAAATTGAGTTGATCTATCGGGCGGAGGGTAATGCAAATTTGGTGCTCG
CCCTGCCGCAATTTAAAAAAGTTTTACGTTTGCCAAAAATGATATCCAGC
AGACTGCGCCAGGCGGCGCACCAGCGGCACGAGCTGGCGGATGAGGTTGC
TCGGCCGGAAGGGCAGCGTGTCTCATCCGAAAGAGCTGGAACTGAAAATG
CTGGCGACTTGACAATGCCGGATTTTATGGCTTATATCGGGATAATGCGC
CGTCTATTAGGAAATGAGTTTGTCTGCGGAGCGGATATTGTTGCCATACC
AAAGGAAGACGATAGATTCTGGATAAACGAGCATATACGCGCCCAAAGAC
CGGTTTCGCGTCTGGATAAGGAATTTGTGGGGCCATTCGGCCTGCTGCTG
CCAGATGTGACCCAATTGCCTGCCACGTTCGATGTTTTACTTGCCAATTT
ACAGGCAAAGGGCACAACAGGAGATGAAAGTGGAGCTGCAGCGGGCGTAG
GAGATGGCGGTGGCGTTGGCCGTGGAGCAGGAACAAGGACGAAAAACAGG
AGCGCTGTCCGTCGTCTGGGCGATACATATGCCATCGAAATAAAACCCAA
ACAAGGCTGGCTTCAGTTGGCAAGTGATGTCAACGATTTATTTGATTTAA
TGCCATCGGGGGCAGTGACAAAGCCAAAGGAGACGACCTGCAATCAGGAG
GAGAATGAGCCCTCTGCCCGGGACAAGTGCTGGTGTCGCTTTTGCAGCAT
GCAACTGCTGAAGATGCACAATGGGAAAATCAAACGTTTGGGCCACTACT
GTCCGCTGGATCTATTTTCCGGTACACCCAGTCGTATGCTCGATGCCTTG
GATGCACTTCTCGCCTGCCCGCAAAATAATTTACGTGTGTTTCAGAACAG
CAATTTAATTTATGGCGATCACGCGAATTCGATTTCCTTCGATGAATTGA
GCTCGCGTGTCTTTCCCGGTGAAATTATGGTGCTTATAAAACATTTGCTG
GTGGCCTGTCTGCTAAGGGAATACGAGCACCCGGAATCCAAACGAGCAGA
GGGCTCCAATCAGAGCCAGAAGCAGCAGCAGGAGCAGCCGGAGCCGGAGC
AGCTGAATCAGAGTCGCGTTTCTATTGCGGCGACGGAGACAAAGGCCGGA
GCTGCTGGAATTGGCGCCGCTAATGTTGTCCTGCCACTCGGAGGCAGGGC
AGCCGCCCCTGTTGTCACTGCCGGTCAATCCTCGACGCGGACAAGAGCAG
CTGCTGCAACAGCCACGACCCAAAGGTACACAAAAGTGGCCAGAGTGGAA
ACAACAATAACTAGACAGGCAGCCACCTCGATGGCAGCAGGACCAGCATC
GAGCAGCCAACTGTCCGGCAATGTGTTGGCAACGGCAACGGCAACGGCAA
CGGCTACGGCAATGGCAACTTCAGGTCGAACGGAAACAAAAACGGAACCG
GAAACTCCGGCTGAGGCTGCTAGTACGACAAGTCGCAACGTGAATCAGAA
TGAAAGCCAAAAACTGAATCGAAATGAGCCTGCGAATCAAACTCAAGCGC
AAAACAACAAAACGGAAATATTTCGCTTACCAAAAAATTGTGTGCTGCAA
AAAATTTTGAATTTGCAATTGCTGGTAAAGGTAAGCCAACCAATCAAACT
GCTGCCCAAACTACTCAGTCTCTGTCCGTTTGGGTTTGTTTATTCTGCCT
GCCCCCCAGAGAACCTTGGCAATTGCAGAGCAAGCTTTCTAGACCAT

BO07916.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:28:10
Subject Length Description Subject Range Query Range Score Percent Strand
Ipk1-RA 1866 CG30295-PA 1..1863 17..1879 9315 100 Plus
Ipk1-RC 2148 CG30295-PC 1..1764 17..1780 8820 100 Plus
Ipk1-RB 2151 CG30295-PB 1..1764 17..1780 8820 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:11
Subject Length Description Subject Range Query Range Score Percent Strand
Ipk1-RA 2472 CG30295-RA 467..2330 16..1879 9320 100 Plus
Ipk1-RC 2633 CG30295-RC 467..2231 16..1780 8825 100 Plus
Ipk1-RB 2636 CG30295-RB 467..2231 16..1780 8825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20877617..20878320 1176..1879 3520 100 Plus
2R 25286936 2R 20871671..20872005 16..350 1675 100 Plus
2R 25286936 2R 20875231..20875546 598..913 1565 99.7 Plus
2R 25286936 2R 20872539..20872692 350..503 770 100 Plus
2R 25286936 2R 20876474..20876621 972..1119 740 100 Plus
2R 25286936 2R 20873650..20873752 503..605 515 100 Plus
2R 25286936 2R 20875603..20875663 912..972 305 100 Plus
2R 25286936 2R 20877254..20877312 1119..1177 295 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:28:09 has no hits.

BO07916.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:55 Download gff for BO07916.complete
Subject Subject Range Query Range Percent Splice Strand
Ipk1-RA 1..1866 17..1880 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:34 Download gff for BO07916.complete
Subject Subject Range Query Range Percent Splice Strand
Ipk1-RA 447..2320 9..1887 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:56 Download gff for BO07916.complete
Subject Subject Range Query Range Percent Splice Strand
Ipk1-RA 468..2330 17..1881 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:55 Download gff for BO07916.complete
Subject Subject Range Query Range Percent Splice Strand
Ipk1-RA 447..2320 9..1887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:17 Download gff for BO07916.complete
Subject Subject Range Query Range Percent Splice Strand
Ipk1-RA 468..2330 17..1881 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:17 Download gff for BO07916.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20872540..20872692 351..503 100 -> Plus
2R 20873651..20873751 504..604 100 -> Plus
2R 20871672..20872005 17..350 100 -> Plus
2R 20875238..20875546 605..913 100 -> Plus
2R 20875605..20875663 914..972 100 -> Plus
2R 20876475..20876621 973..1119 100 -> Plus
2R 20877255..20877312 1120..1177 100 -> Plus
2R 20877619..20878320 1178..1881 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:56 Download gff for BO07916.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16759177..16759510 17..350 100 -> Plus
arm_2R 16760045..16760197 351..503 100 -> Plus
arm_2R 16761156..16761256 504..604 100 -> Plus
arm_2R 16762743..16763051 605..913 100 -> Plus
arm_2R 16763110..16763168 914..972 100 -> Plus
arm_2R 16763980..16764126 973..1119 100 -> Plus
arm_2R 16764760..16764817 1120..1177 100 -> Plus
arm_2R 16765124..16765825 1178..1881 99   Plus

BO07916.pep Sequence

Translation from 16 to 1897

> BO07916.pep
MTAERGPRSPGTGQKLRLRATEPMPQWTAKNLHALLDLPAAMELRQIELI
YRAEGNANLVLALPQFKKVLRLPKMISSRLRQAAHQRHELADEVARPEGQ
RVSSERAGTENAGDLTMPDFMAYIGIMRRLLGNEFVCGADIVAIPKEDDR
FWINEHIRAQRPVSRLDKEFVGPFGLLLPDVTQLPATFDVLLANLQAKGT
TGDESGAAAGVGDGGGVGRGAGTRTKNRSAVRRLGDTYAIEIKPKQGWLQ
LASDVNDLFDLMPSGAVTKPKETTCNQEENEPSARDKCWCRFCSMQLLKM
HNGKIKRLGHYCPLDLFSGTPSRMLDALDALLACPQNNLRVFQNSNLIYG
DHANSISFDELSSRVFPGEIMVLIKHLLVACLLREYEHPESKRAEGSNQS
QKQQQEQPEPEQLNQSRVSIAATETKAGAAGIGAANVVLPLGGRAAAPVV
TAGQSSTRTRAAAATATTQRYTKVARVETTITRQAATSMAAGPASSSQLS
GNVLATATATATATAMATSGRTETKTEPETPAEAASTTSRNVNQNESQKL
NRNEPANQTQAQNNKTEIFRLPKNCVLQKILNLQLLVKVSQPIKLLPKLL
SLCPFGFVYSACPPENLGNCRASFLDH

BO07916.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
Ipk1-PA 621 CG30295-PA 1..621 1..621 3178 100 Plus
Ipk1-PC 715 CG30295-PC 1..588 1..588 2996 100 Plus
Ipk1-PB 716 CG30295-PB 1..588 1..588 2996 100 Plus
Ipk1-PD 576 CG30295-PD 57..448 197..588 1992 100 Plus