Clone Sequence Records
BO07920.3prime Sequence
955 bp (791 high quality bases) assembled on 2006-01-06
> BO07920.3prime
ATGGTCTAGAAAGCTTGCAGTGCTGATATGATTTGAGCTCTCTTTGGCCA
CTTCGATAGGATCGGGGTACTCCGGCTGCAAGTGCAGAGCGCCCAGGAGT
TTCCGCCTACCGTGGACGTACCACAACATCTCTCGGTAGGATCGCGGGAG
GACTTCGTCCAGCACCTTGTCCGCCCGATAGGTCAAGTAGAAGACATTGG
TGGTCTGCACTTTGCCGCTCTTGGCATCCCAAATCTGGGCCACGGTCATC
AGCTGGACGTAGTTCTGGGCGGCGTAAACAACGTGGGCGGTGAGCTGGAG
GAACCGATCCACATGCACCGGGTGCATGAAACTAATGTCCGAGATGCACC
TGAGGGTGGGCCGATCGCCCAGATAGATGCTAGCCATTATGAAGCTGATT
TCAACGGCCTGGCGCATGAGATAGCCCCCAAAGATGGTGTTCTGCGCATT
CCTGTTCTCCGGAAATGGAGCAATCATCGTAGACTGCATAGAGTCCTCCA
TCCAGCGGCATTTCGGCGGCAGCACACGCTTGTTGAGATCCATACTATTG
GCTGGGGTGGTTCTCTTGAGGATCTCGTACATGAGGGCCTGTTCGTGCTC
CCTGGGCGGCGAGTTGAACACTGAGTCCATGGCAGAAGACTTGCGCACTT
TTTGCCGCTTCTCTGCCTGCTCCCAAATGAGCTTCTCGGTTTCATCGCCA
ACCTCTATAGGATTAATGGGAGCCGGTCCCGTATTGGTGGCATTTCTGGC
CACCATGACGAAGATTGCTTTTGTTACATCAATATATTCGCCGTGGGCCA
ACTGCCTCACATAGATGGTAATCTCCATGGAGCTCCGCCCCGCCCACGAG
ATGTGACCACTGATCTCGATGTCCTGGTTGACCTGCAACCGCTCCAGGTT
GGTGAACTCCACTTTGTCGACCAGCCACGTGACAAAGGTGTAAGCAAAGG
CACTC
BO07920.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:13:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1774-PA | 1419 | CG1774-RA | 491..1416 | 944..19 | 4605 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:38:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1774-RB | 1731 | CG1774-RB | 667..1604 | 955..19 | 4650 | 99.8 | Minus |
| CG1774-RA | 1860 | CG1774-RA | 796..1733 | 955..19 | 4650 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:38:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31593655..31594592 | 955..19 | 4625 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:38:08 has no hits.
BO07920.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:32:35 Download gff for
BO07920.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1774-PA | 479..1419 | 18..955 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:20:44 Download gff for
BO07920.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1774-PA | 479..1419 | 18..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:05:34 Download gff for
BO07920.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1774-RA | 855..1792 | 19..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:53:12 Download gff for
BO07920.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1774-RA | 796..1733 | 19..955 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:53:12 Download gff for
BO07920.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31593655..31594592 | 19..955 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:05:34 Download gff for
BO07920.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27419377..27420314 | 19..955 | 99 | | Minus |
BO07920.5prime Sequence
928 bp (763 high quality bases) assembled on 2006-01-06
> BO07920.5prime
GAAGTTATCAGTCGACATGCTGTGTACCTTGGCACGGAGTTTTGGAACGG
CGCTGGCGAGGAGGAGCTCTTGGTCGACTGCCCGGCGAAGGCGACTGCTG
GCCACAAGTCCCCCCCCTTTGGCGAGCCAGCAGATGCCCAGGAGCTATAC
GCTAGACAACGGACCCAAGGTGAAGTCCGATCATCGCTCTGGAACGATGG
TGGAGGTGGCTCGTGTCATTCGCGAGCAATCCGGCGTGGACGTGGGATAC
CATACGATTCCCAAGCCCCGAGATCATCTCCTGCAGCACGAGCCGAAGAG
GGAGGAGCTTCCACCAAGAACTATGCTGGATTCGCACACCACGGCCATTC
TGCCCCTGAGCTCCAGTGAGCTAATCCGCGAGAGCTACGTGAATCACCTG
GGAAGGGTGAGATTGGGCCGAATTATGGAGGAGTTGGACATGTTTGCCGT
ATGGATCTGCCATCGTCATGTGAAGCTGCCCAAGCTGCCGAAGGGAGTGC
CTTTGCCTTACACCTTTGTCACGTTGCTGGTCGACAAAGTGGAGTTCACC
AACCTGGAGCGGTTGCAGGTCAACCAGGACATCGAGATCAGTGGTCACAT
CTCGTGGGCGGGGCGGAGCTCCATGGAGATTACCATCTATGTGAGGCAGT
TGGCCCACGGCGAATATATTGATGTAACAAAAGCAATCTTCGTCATGGTG
GCCAGAAATGCCACCAATACGGGACCGGCTCCCATTAATCCTATAGAGGT
TGGCGATGAAACCGAGAAGCTCATTTGGGAGCAGGCAGAGAAGCGGCAAA
AAGTGCGCAAGTCTTCTGCCATGGACTCAGTGTTCAACTCGCCGCCCAGG
GAGCACGAACAGGCCCTCATGTACGAGATCCTCAAGAGAACCCCCCAGGC
AATAATATGGATCTCAACAAGCGTGTGC
BO07920.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:13:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1774-PA | 1419 | CG1774-RA | 1..876 | 17..892 | 4380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:01:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1774-RB | 1731 | CG1774-RB | 189..1101 | 17..928 | 4510 | 99.7 | Plus |
| CG1774-RA | 1860 | CG1774-RA | 318..1230 | 17..928 | 4510 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:01:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31593366..31594089 | 206..928 | 3540 | 99.6 | Plus |
| 3R | 32079331 | 3R | 31593120..31593309 | 17..206 | 950 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:01:19 has no hits.
BO07920.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:32:36 Download gff for
BO07920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1774-PA | 1..913 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:20:45 Download gff for
BO07920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1774-PA | 1..913 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:09:08 Download gff for
BO07920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1774-RA | 377..1289 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:10:58 Download gff for
BO07920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1774-RA | 318..1230 | 17..928 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:10:58 Download gff for
BO07920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31593120..31593309 | 17..206 | 100 | -> | Plus |
| 3R | 31593367..31594089 | 207..928 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:09:08 Download gff for
BO07920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27418842..27419031 | 17..206 | 100 | -> | Plus |
| arm_3R | 27419089..27419811 | 207..928 | 99 | | Plus |
BO07920.complete Sequence
1450 bp (1450 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630986
> BO07920.complete
GAAGTTATCAGTCGACATGCTGTGTACCTTGGCACGGAGTTTTGGAACGG
CGCTGGCGAGGAGGAGCTCTTGGTCGACTGCCCGGCGAAGGCGACTGCTG
GCCACAAGTCCCCCCCCTTTGGCGAGCCAGCAGATGCCCAGGAGCTATAC
GCTAGACAACGGACCCAAGGTGAAGTCCGATCATCGCTCTGGAACGATGG
TGGAGGTGGCTCGTGTCATTCGCGAGCAATCCGGCGTGGACGTGGGATAC
CATACGATTCCCAAGCCCCGAGATCATCTCCTGCAGCACGAGCCGAAGAG
GGAGGAGCTTCCACCAAGAACTATGCTGGATTCGCACACCACGGCCATTC
TGCCCCTGAGCTCCAGTGAGCTAATCCGCGAGAGCTACGTGAATCACCTG
GGAAGGGTGAGATTGGGCCGAATTATGGAGGAGTTGGACATGTTTGCCGT
ATGGATCTGCCATCGTCATGTGAAGCTGCCCAAGCTGCCGAAGGGAGTGC
CTTTGCCTTACACCTTTGTCACGTTGCTGGTCGACAAAGTGGAGTTCACC
AACCTGGAGCGGTTGCAGGTCAACCAGGACATCGAGATCAGTGGTCACAT
CTCGTGGGCGGGGCGGAGCTCCATGGAGATTACCATCTATGTGAGGCAGT
TGGCCCACGGCGAATATATTGATGTAACAAAAGCAATCTTCGTCATGGTG
GCCAGAAATGCCACCAATACGGGACCGGCTCCCATTAATCCTATAGAGGT
TGGCGATGAAACCGAGAAGCTCATTTGGGAGCAGGCAGAGAAGCGGCAAA
AAGTGCGCAAGTCTTCTGCCATGGACTCAGTGTTCAACTCGCCGCCCAGG
GAGCACGAACAGGCCCTCATGTACGAGATCCTCAAGAGAACCACCCCAGC
CAATAGTATGGATCTCAACAAGCGTGTGCTGCCGCCGAAATGCCGCTGGA
TGGAGGACTCTATGCAGTCTACGATGATTGCTCCATTTCCGGAGAACAGG
AATGCGCAGAACACCATCTTTGGGGGCTATCTCATGCGCCAGGCCGTTGA
AATCAGCTTCATAATGGCTAGCATCTATCTGGGCGATCGGCCCACCCTCA
GGTGCATCTCGGACATTAGTTTCATGCACCCGGTGCATGTGGATCGGTTC
CTCCAGCTCACCGCCCACGTTGTTTACGCCGCCCAGAACTACGTCCAGCT
GATGACCGTGGCCCAGATTTGGGATGCCAAGAGCGGCAAAGTGCAGACCA
CCAATGTCTTCTACTTGACCTATCGGGCGGACAAGGTGCTGGACGAAGTC
CTCCCGCGATCCTACCGAGAGATGTTGTGGTACGTCCACGGTAGGCGGAA
ACTCCTGGGCGCTCTGCACTTGCAGCCGGAGTACCCCGATCCTATCGAAG
TGGCCAAAGAGAGCTCAAATCATATCAGCACTGCAAGCTTTCTAGACCAT
BO07920.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:58:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1774-RB | 1419 | CG1774-PB | 1..1416 | 17..1432 | 7080 | 100 | Plus |
| CG1774-RA | 1419 | CG1774-PA | 1..1416 | 17..1432 | 7080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:58:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1774-RB | 1731 | CG1774-RB | 189..1604 | 17..1432 | 7080 | 100 | Plus |
| CG1774-RA | 1860 | CG1774-RA | 318..1733 | 17..1432 | 7080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:58:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31593366..31594592 | 206..1432 | 6135 | 100 | Plus |
| 3R | 32079331 | 3R | 31593120..31593309 | 17..206 | 950 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:58:12 has no hits.
BO07920.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:08 Download gff for
BO07920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1774-RA | 1..1419 | 17..1433 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:29 Download gff for
BO07920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1774-RA | 377..1792 | 17..1432 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:42:24 Download gff for
BO07920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1774-RA | 377..1792 | 17..1434 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:08 Download gff for
BO07920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1774-RA | 377..1792 | 17..1432 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:47:18 Download gff for
BO07920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1774-RA | 318..1733 | 17..1434 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:47:18 Download gff for
BO07920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31593120..31593309 | 17..206 | 100 | -> | Plus |
| 3R | 31593367..31594592 | 207..1434 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:42:24 Download gff for
BO07920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27418842..27419031 | 17..206 | 100 | -> | Plus |
| arm_3R | 27419089..27420314 | 207..1434 | 99 | | Plus |
BO07920.pep Sequence
Translation from 16 to 1450
> BO07920.pep
MLCTLARSFGTALARRSSWSTARRRRLLATSPPPLASQQMPRSYTLDNGP
KVKSDHRSGTMVEVARVIREQSGVDVGYHTIPKPRDHLLQHEPKREELPP
RTMLDSHTTAILPLSSSELIRESYVNHLGRVRLGRIMEELDMFAVWICHR
HVKLPKLPKGVPLPYTFVTLLVDKVEFTNLERLQVNQDIEISGHISWAGR
SSMEITIYVRQLAHGEYIDVTKAIFVMVARNATNTGPAPINPIEVGDETE
KLIWEQAEKRQKVRKSSAMDSVFNSPPREHEQALMYEILKRTTPANSMDL
NKRVLPPKCRWMEDSMQSTMIAPFPENRNAQNTIFGGYLMRQAVEISFIM
ASIYLGDRPTLRCISDISFMHPVHVDRFLQLTAHVVYAAQNYVQLMTVAQ
IWDAKSGKVQTTNVFYLTYRADKVLDEVLPRSYREMLWYVHGRRKLLGAL
HLQPEYPDPIEVAKESSNHISTASFLDH
BO07920.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1774-PB | 472 | CG1774-PB | 1..472 | 1..472 | 2457 | 100 | Plus |
| CG1774-PA | 472 | CG1774-PA | 1..472 | 1..472 | 2457 | 100 | Plus |
| CG1635-PA | 448 | CG1635-PA | 6..440 | 13..445 | 1115 | 46.9 | Plus |
| CG1638-PB | 443 | CG1638-PB | 32..441 | 38..449 | 1053 | 47.3 | Plus |
| CG13771-PA | 451 | CG13771-PA | 9..423 | 25..444 | 934 | 44.4 | Plus |
