Clone Sequence Records
BO07923.3prime Sequence
683 bp (682 high quality bases) assembled on 2006-01-06
> BO07923.3prime
ATGGTCTAGAAAGCTTGCTTCGTAAAAGTGCTTCTGCACCCATCGAGGCA
AGGCAAAGGCGGCGGAGTGAACCTCGGAGGAGTAGTACCTTAGGTCTATA
GAATCGATTTCGGACTTTCCAAGCTTGGGAGTAGCGAAGTCCTGGTTTTT
GTTCAGGGAGCCCATGACGAAGCCAATGTGGCCGCAGGGATAGGACGGAA
CGGAGGTGACGGCATAGGCCACCTTAGCAAAGTGCTCCTTGCAGCCGGAC
ATGGTCTTCTTGATGTAGTCCAGGTCCAGCCAGAAGCTACCGCCCTGGGA
GCACACGATTCCGTCATCCTTCAGCGCGTGTTTCATTAGCTCGTAGTAGC
TTTCCTGAAACAGGCTCACTGCCGGACCAATGGGATCCGAGCTGTCGGTG
ATGATGACATCAAATTCGTTCTTGTGTTTCTTCATATAGTCGAATCCATC
GCCAATGGTAAGCTTCAACTTCTCGTTGGCGAAACCACAGGCCATCGCTG
GGAGATATTGCTTGGACAGCTCGACGACACGGTCGTCGATTTCCACCTGA
TGCACTTCCTCGACCAGTGGATGCTTTACCACCTCGCGAGCAACGCCGCC
ATCGCCACCGCCCACGATCAGGACCTTTTTGGGATTGGGATGGGCGCAGA
GCGGCAGGAAAGATATCATGTCGACTGATAACT
BO07923.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:13:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8327-PA | 864 | SpdS-RA | 211..861 | 669..19 | 3255 | 100 | Minus |
CG8327-PB | 654 | SpdS-RB | 1..651 | 669..19 | 3255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:01:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SpdS-RC | 995 | CG8327-RC | 261..911 | 669..19 | 3255 | 100 | Minus |
SpdS-RB | 1189 | CG8327-RB | 455..1105 | 669..19 | 3255 | 100 | Minus |
SpdS-RA | 1511 | CG8327-RA | 291..941 | 669..19 | 3255 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:01:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9632453..9633103 | 669..19 | 3255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:01:36 has no hits.
BO07923.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:32:41 Download gff for
BO07923.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-PB | 1..654 | 16..669 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:20:51 Download gff for
BO07923.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8327-PB | 1..654 | 16..669 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:09:12 Download gff for
BO07923.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RA | 282..951 | 11..680 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:11:41 Download gff for
BO07923.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RA | 282..951 | 11..680 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:11:41 Download gff for
BO07923.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9632444..9633113 | 11..680 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:09:12 Download gff for
BO07923.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5458166..5458835 | 11..680 | 98 | | Minus |
BO07923.5prime Sequence
683 bp (682 high quality bases) assembled on 2006-01-06
> BO07923.5prime
GAAGTTATCAGTCGACATGATATCTTTCCTGCCGCTCTGCGCCCATCCCA
ATCCCAAAAAGGTCCTGATCGTGGGCGGTGGCGATGGCGGCGTTGCTCGC
GAGGTGGTAAAGCATCCACTGGTCGAGGAAGTGCATCAGGTGGAAATCGA
CGACCGTGTCGTCGAGCTGTCCAAGCAATATCTCCCAGCGATGGCCTGTG
GTTTCGCCAACGAGAAGTTGAAGCTTACCATTGGCGATGGATTCGACTAT
ATGAAGAAACACAAGAACGAATTTGATGTCATCATCACCGACAGCTCGGA
TCCCATTGGTCCGGCAGTGAGCCTGTTTCAGGAAAGCTACTACGAGCTAA
TGAAACACGCGCTGAAGGATGACGGAATCGTGTGCTCCCAGGGCGGTAGC
TTCTGGCTGGACCTGGACTACATCAAGAAGACCATGTCCGGCTGCAAGGA
GCACTTTGCTAAGGTGGCCTATGCCGTCACCTCCGTTCCGTCCTATCCCT
GCGGCCACATTGGCTTCGTCATGGGCTCCCTGAACAAAAACCAGGACTTC
GCTACTCCCAAGCTTGGAAAGTCCGAAATCGATTCTATAGACCTAAGGTA
CTACTCCTCCGAGGTTCACTCCGCCGCCTTTGCCTTGCCTCGATGGGTGC
AGAAGCACTTTTACGAAGCAAGCTTTCTAGACC
BO07923.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:13:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8327-PA | 864 | SpdS-RA | 211..861 | 17..667 | 3255 | 100 | Plus |
CG8327-PB | 654 | SpdS-RB | 1..651 | 17..667 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:02:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SpdS-RC | 995 | CG8327-RC | 261..911 | 17..667 | 3255 | 100 | Plus |
SpdS-RB | 1189 | CG8327-RB | 455..1105 | 17..667 | 3255 | 100 | Plus |
SpdS-RA | 1511 | CG8327-RA | 291..941 | 17..667 | 3255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:02:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9632453..9633103 | 17..667 | 3255 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:02:17 has no hits.
BO07923.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:32:42 Download gff for
BO07923.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-PB | 1..654 | 17..670 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:20:53 Download gff for
BO07923.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8327-PB | 1..654 | 17..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:09:17 Download gff for
BO07923.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RA | 282..951 | 6..675 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:12:16 Download gff for
BO07923.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RA | 282..951 | 6..675 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:12:16 Download gff for
BO07923.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9632444..9633113 | 6..675 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:09:17 Download gff for
BO07923.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5458166..5458835 | 6..675 | 98 | | Plus |
BO07923.complete Sequence
685 bp (685 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630988
> BO07923.complete
GAAGTTATCAGTCGACATGATATCTTTCCTGCCGCTCTGCGCCCATCCCA
ATCCCAAAAAGGTCCTGATCGTGGGCGGTGGCGATGGCGGCGTTGCTCGC
GAGGTGGTAAAGCATCCACTGGTCGAGGAAGTGCATCAGGTGGAAATCGA
CGACCGTGTCGTCGAGCTGTCCAAGCAATATCTCCCAGCGATGGCCTGTG
GTTTCGCCAACGAGAAGTTGAAGCTTACCATTGGCGATGGATTCGACTAT
ATGAAGAAACACAAGAACGAATTTGATGTCATCATCACCGACAGCTCGGA
TCCCATTGGTCCGGCAGTGAGCCTGTTTCAGGAAAGCTACTACGAGCTAA
TGAAACACGCGCTGAAGGATGACGGAATCGTGTGCTCCCAGGGCGGTAGC
TTCTGGCTGGACCTGGACTACATCAAGAAGACCATGTCCGGCTGCAAGGA
GCACTTTGCTAAGGTGGCCTATGCCGTCACCTCCGTTCCGTCCTATCCCT
GCGGCCACATTGGCTTCGTCATGGGCTCCCTGAACAAAAACCAGGACTTC
GCTACTCCCAAGCTTGGAAAGTCCGAAATCGATTCTATAGACCTAAGGTA
CTACTCCTCCGAGGTTCACTCCGCCGCCTTTGCCTTGCCTCGATGGGTGC
AGAAGCACTTTTACGAAGCAAGCTTTCTAGACCAT
BO07923.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:21:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SpdS-RC | 864 | CG8327-PC | 211..861 | 17..667 | 3255 | 100 | Plus |
SpdS-RB | 654 | CG8327-PB | 1..651 | 17..667 | 3255 | 100 | Plus |
SpdS-RA | 864 | CG8327-PA | 211..861 | 17..667 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:21:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SpdS-RC | 995 | CG8327-RC | 261..911 | 17..667 | 3255 | 100 | Plus |
SpdS-RB | 1189 | CG8327-RB | 455..1105 | 17..667 | 3255 | 100 | Plus |
SpdS-RA | 1511 | CG8327-RA | 291..941 | 17..667 | 3255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:21:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9632453..9633103 | 17..667 | 3255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:21:22 has no hits.
BO07923.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:53:36 Download gff for
BO07923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RB | 1..654 | 17..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:25:47 Download gff for
BO07923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RB | 458..1127 | 6..675 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:43 Download gff for
BO07923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RA | 291..941 | 17..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:53:36 Download gff for
BO07923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RB | 458..1127 | 6..675 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:40 Download gff for
BO07923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RA | 291..941 | 17..669 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:40 Download gff for
BO07923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9632453..9633103 | 17..669 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:43 Download gff for
BO07923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5458175..5458825 | 17..669 | 99 | | Plus |
BO07923.pep Sequence
Translation from 16 to 685
> BO07923.pep
MISFLPLCAHPNPKKVLIVGGGDGGVAREVVKHPLVEEVHQVEIDDRVVE
LSKQYLPAMACGFANEKLKLTIGDGFDYMKKHKNEFDVIITDSSDPIGPA
VSLFQESYYELMKHALKDDGIVCSQGGSFWLDLDYIKKTMSGCKEHFAKV
AYAVTSVPSYPCGHIGFVMGSLNKNQDFATPKLGKSEIDSIDLRYYSSEV
HSAAFALPRWVQKHFYEASFLDH
BO07923.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:27:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SpdS-PB | 217 | CG8327-PB | 1..217 | 1..217 | 1155 | 100 | Plus |
SpdS-PC | 287 | CG8327-PC | 71..287 | 1..217 | 1155 | 100 | Plus |
SpdS-PA | 287 | CG8327-PA | 71..287 | 1..217 | 1155 | 100 | Plus |