Clone BO07923 Report

Search the DGRC for BO07923

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:79
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptSpdS-RB
Protein status:BO07923.pep: validated not full length
Sequenced Size:685

Clone Sequence Records

BO07923.3prime Sequence

683 bp (682 high quality bases) assembled on 2006-01-06

> BO07923.3prime
ATGGTCTAGAAAGCTTGCTTCGTAAAAGTGCTTCTGCACCCATCGAGGCA
AGGCAAAGGCGGCGGAGTGAACCTCGGAGGAGTAGTACCTTAGGTCTATA
GAATCGATTTCGGACTTTCCAAGCTTGGGAGTAGCGAAGTCCTGGTTTTT
GTTCAGGGAGCCCATGACGAAGCCAATGTGGCCGCAGGGATAGGACGGAA
CGGAGGTGACGGCATAGGCCACCTTAGCAAAGTGCTCCTTGCAGCCGGAC
ATGGTCTTCTTGATGTAGTCCAGGTCCAGCCAGAAGCTACCGCCCTGGGA
GCACACGATTCCGTCATCCTTCAGCGCGTGTTTCATTAGCTCGTAGTAGC
TTTCCTGAAACAGGCTCACTGCCGGACCAATGGGATCCGAGCTGTCGGTG
ATGATGACATCAAATTCGTTCTTGTGTTTCTTCATATAGTCGAATCCATC
GCCAATGGTAAGCTTCAACTTCTCGTTGGCGAAACCACAGGCCATCGCTG
GGAGATATTGCTTGGACAGCTCGACGACACGGTCGTCGATTTCCACCTGA
TGCACTTCCTCGACCAGTGGATGCTTTACCACCTCGCGAGCAACGCCGCC
ATCGCCACCGCCCACGATCAGGACCTTTTTGGGATTGGGATGGGCGCAGA
GCGGCAGGAAAGATATCATGTCGACTGATAACT

BO07923.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:13:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG8327-PA 864 SpdS-RA 211..861 669..19 3255 100 Minus
CG8327-PB 654 SpdS-RB 1..651 669..19 3255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:01:37
Subject Length Description Subject Range Query Range Score Percent Strand
SpdS-RC 995 CG8327-RC 261..911 669..19 3255 100 Minus
SpdS-RB 1189 CG8327-RB 455..1105 669..19 3255 100 Minus
SpdS-RA 1511 CG8327-RA 291..941 669..19 3255 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9632453..9633103 669..19 3255 100 Minus
Blast to na_te.dros performed on 2015-02-13 07:01:36 has no hits.

BO07923.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:32:41 Download gff for BO07923.3prime
Subject Subject Range Query Range Percent Splice Strand
SpdS-PB 1..654 16..669 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:20:51 Download gff for BO07923.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8327-PB 1..654 16..669 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:09:12 Download gff for BO07923.3prime
Subject Subject Range Query Range Percent Splice Strand
SpdS-RA 282..951 11..680 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:11:41 Download gff for BO07923.3prime
Subject Subject Range Query Range Percent Splice Strand
SpdS-RA 282..951 11..680 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:11:41 Download gff for BO07923.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9632444..9633113 11..680 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:09:12 Download gff for BO07923.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5458166..5458835 11..680 98   Minus

BO07923.5prime Sequence

683 bp (682 high quality bases) assembled on 2006-01-06

> BO07923.5prime
GAAGTTATCAGTCGACATGATATCTTTCCTGCCGCTCTGCGCCCATCCCA
ATCCCAAAAAGGTCCTGATCGTGGGCGGTGGCGATGGCGGCGTTGCTCGC
GAGGTGGTAAAGCATCCACTGGTCGAGGAAGTGCATCAGGTGGAAATCGA
CGACCGTGTCGTCGAGCTGTCCAAGCAATATCTCCCAGCGATGGCCTGTG
GTTTCGCCAACGAGAAGTTGAAGCTTACCATTGGCGATGGATTCGACTAT
ATGAAGAAACACAAGAACGAATTTGATGTCATCATCACCGACAGCTCGGA
TCCCATTGGTCCGGCAGTGAGCCTGTTTCAGGAAAGCTACTACGAGCTAA
TGAAACACGCGCTGAAGGATGACGGAATCGTGTGCTCCCAGGGCGGTAGC
TTCTGGCTGGACCTGGACTACATCAAGAAGACCATGTCCGGCTGCAAGGA
GCACTTTGCTAAGGTGGCCTATGCCGTCACCTCCGTTCCGTCCTATCCCT
GCGGCCACATTGGCTTCGTCATGGGCTCCCTGAACAAAAACCAGGACTTC
GCTACTCCCAAGCTTGGAAAGTCCGAAATCGATTCTATAGACCTAAGGTA
CTACTCCTCCGAGGTTCACTCCGCCGCCTTTGCCTTGCCTCGATGGGTGC
AGAAGCACTTTTACGAAGCAAGCTTTCTAGACC

BO07923.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG8327-PA 864 SpdS-RA 211..861 17..667 3255 100 Plus
CG8327-PB 654 SpdS-RB 1..651 17..667 3255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
SpdS-RC 995 CG8327-RC 261..911 17..667 3255 100 Plus
SpdS-RB 1189 CG8327-RB 455..1105 17..667 3255 100 Plus
SpdS-RA 1511 CG8327-RA 291..941 17..667 3255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9632453..9633103 17..667 3255 100 Plus
Blast to na_te.dros performed on 2015-02-13 07:02:17 has no hits.

BO07923.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:32:42 Download gff for BO07923.5prime
Subject Subject Range Query Range Percent Splice Strand
SpdS-PB 1..654 17..670 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:20:53 Download gff for BO07923.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8327-PB 1..654 17..670 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:09:17 Download gff for BO07923.5prime
Subject Subject Range Query Range Percent Splice Strand
SpdS-RA 282..951 6..675 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:12:16 Download gff for BO07923.5prime
Subject Subject Range Query Range Percent Splice Strand
SpdS-RA 282..951 6..675 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:12:16 Download gff for BO07923.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9632444..9633113 6..675 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:09:17 Download gff for BO07923.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5458166..5458835 6..675 98   Plus

BO07923.complete Sequence

685 bp (685 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630988

> BO07923.complete
GAAGTTATCAGTCGACATGATATCTTTCCTGCCGCTCTGCGCCCATCCCA
ATCCCAAAAAGGTCCTGATCGTGGGCGGTGGCGATGGCGGCGTTGCTCGC
GAGGTGGTAAAGCATCCACTGGTCGAGGAAGTGCATCAGGTGGAAATCGA
CGACCGTGTCGTCGAGCTGTCCAAGCAATATCTCCCAGCGATGGCCTGTG
GTTTCGCCAACGAGAAGTTGAAGCTTACCATTGGCGATGGATTCGACTAT
ATGAAGAAACACAAGAACGAATTTGATGTCATCATCACCGACAGCTCGGA
TCCCATTGGTCCGGCAGTGAGCCTGTTTCAGGAAAGCTACTACGAGCTAA
TGAAACACGCGCTGAAGGATGACGGAATCGTGTGCTCCCAGGGCGGTAGC
TTCTGGCTGGACCTGGACTACATCAAGAAGACCATGTCCGGCTGCAAGGA
GCACTTTGCTAAGGTGGCCTATGCCGTCACCTCCGTTCCGTCCTATCCCT
GCGGCCACATTGGCTTCGTCATGGGCTCCCTGAACAAAAACCAGGACTTC
GCTACTCCCAAGCTTGGAAAGTCCGAAATCGATTCTATAGACCTAAGGTA
CTACTCCTCCGAGGTTCACTCCGCCGCCTTTGCCTTGCCTCGATGGGTGC
AGAAGCACTTTTACGAAGCAAGCTTTCTAGACCAT

BO07923.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
SpdS-RC 864 CG8327-PC 211..861 17..667 3255 100 Plus
SpdS-RB 654 CG8327-PB 1..651 17..667 3255 100 Plus
SpdS-RA 864 CG8327-PA 211..861 17..667 3255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:21:24
Subject Length Description Subject Range Query Range Score Percent Strand
SpdS-RC 995 CG8327-RC 261..911 17..667 3255 100 Plus
SpdS-RB 1189 CG8327-RB 455..1105 17..667 3255 100 Plus
SpdS-RA 1511 CG8327-RA 291..941 17..667 3255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9632453..9633103 17..667 3255 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:21:22 has no hits.

BO07923.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:53:36 Download gff for BO07923.complete
Subject Subject Range Query Range Percent Splice Strand
SpdS-RB 1..654 17..670 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:25:47 Download gff for BO07923.complete
Subject Subject Range Query Range Percent Splice Strand
SpdS-RB 458..1127 6..675 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:43 Download gff for BO07923.complete
Subject Subject Range Query Range Percent Splice Strand
SpdS-RA 291..941 17..669 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:53:36 Download gff for BO07923.complete
Subject Subject Range Query Range Percent Splice Strand
SpdS-RB 458..1127 6..675 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:40 Download gff for BO07923.complete
Subject Subject Range Query Range Percent Splice Strand
SpdS-RA 291..941 17..669 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:40 Download gff for BO07923.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9632453..9633103 17..669 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:43 Download gff for BO07923.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5458175..5458825 17..669 99   Plus

BO07923.pep Sequence

Translation from 16 to 685

> BO07923.pep
MISFLPLCAHPNPKKVLIVGGGDGGVAREVVKHPLVEEVHQVEIDDRVVE
LSKQYLPAMACGFANEKLKLTIGDGFDYMKKHKNEFDVIITDSSDPIGPA
VSLFQESYYELMKHALKDDGIVCSQGGSFWLDLDYIKKTMSGCKEHFAKV
AYAVTSVPSYPCGHIGFVMGSLNKNQDFATPKLGKSEIDSIDLRYYSSEV
HSAAFALPRWVQKHFYEASFLDH

BO07923.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:27:28
Subject Length Description Subject Range Query Range Score Percent Strand
SpdS-PB 217 CG8327-PB 1..217 1..217 1155 100 Plus
SpdS-PC 287 CG8327-PC 71..287 1..217 1155 100 Plus
SpdS-PA 287 CG8327-PA 71..287 1..217 1155 100 Plus