Clone BO07938 Report

Search the DGRC for BO07938

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:79
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG32626-RC
Protein status:BO07938.pep: validated full length
Sequenced Size:2155

Clone Sequence Records

BO07938.3prime Sequence

890 bp (771 high quality bases) assembled on 2006-01-06

> BO07938.3prime
ATGGTCTAGAAAGCTTGCTGTGGCGTTCATGTCTGCAATGGAGCACGTCT
GGTTCACCTTGAAGATGTTGGACAGCTCGTCCAGCAGTGTCTCATAGCGA
TAGGCCACACGGATCTCTGGCACATTGGTGCGCGTGATGTCGTTGCCCAT
GATACCGTCCTCGTAATAGATGGGTCCCAGCCACTGCTGTTTGATGGCAT
GTGGGAATCCGCTCATCATCACACTGTTCCTGGCCAGCTCGCACATGTCG
CATGAGCTGAGCTTCCACACCTGTGCCGCAATGCTGTACTCCTCCATGAG
GGGTTCCTTGGTGAAGTGGAATTGCAAGGGATCATCCGTGGAGAGGGAAA
TGATGAGGCCACGGGCCAAATACTCTGGCAGCGGATTGCGATGATAGTTG
AGGAACAGGGAGTTGTTCGACAGCGGCGACATGGCGATGCCAATCTGGGT
CAGATAATACAGATACTGCAGCACGGGCACTTTGCGCAACAGGAGGCCGT
GGGAGATGTTCTCGGCCATGAGGAAGCCGCAAACCAGATGCTGCACGGGT
CCAGCCTCGCCGCAATGGGGCCGCAGCACAAAGGTGTTCATATTGCGAGA
TTGTCTAAACTTGTTCAGCACCGTCATGTTGGCGTACATATAGTAGATAT
AGTAGGCATAGGGCGGATTCTCCTCGTAGGTCCACTCCTCCGGACGTGGC
ACATCGTTGTCGAAGAGCGGATTCTCCGGCTTGGACTCATCGTCCACCGA
ATCGAATCCGATCACGTACTGCAGAAAGCGATGCAACTCGGGATGCTTAC
TGGGTCGGGCTGTCGCCTCGAAGAGCGGCAGGAATATGTTGTTCAAGATC
TCCTGGAATGACTTCATCATCTTGTTCGACTTGAAGATGT

BO07938.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:13:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG32626-PA 2325 CG32626-RA 1451..2322 890..19 4360 100 Minus
CG32626-PB 1959 CG32626-RB 1085..1956 890..19 4360 100 Minus
CG32626-PD 2334 CG32626-RD 1460..2331 890..19 4360 100 Minus
CG32626-PC 2124 CG32626-RC 1250..2121 890..19 4360 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:13:23
Subject Length Description Subject Range Query Range Score Percent Strand
AMPdeam-RH 2656 CG32626-RH 1610..2481 890..19 4360 100 Minus
AMPdeam-RG 2611 CG32626-RG 1565..2436 890..19 4360 100 Minus
AMPdeam-RF 2814 CG32626-RF 1768..2639 890..19 4360 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13831339..13831634 306..601 1480 100 Plus
X 23542271 X 13831702..13831990 602..890 1445 100 Plus
X 23542271 X 13830924..13831100 19..195 885 100 Plus
X 23542271 X 13831168..13831280 196..308 565 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:13:19 has no hits.

BO07938.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:33:11 Download gff for BO07938.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32626-PA 1451..2325 18..890 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:21:31 Download gff for BO07938.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32626-PC 1250..2124 18..890 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:31:07 Download gff for BO07938.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32626-RF 1768..2639 19..890 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:41:28 Download gff for BO07938.3prime
Subject Subject Range Query Range Percent Splice Strand
AMPdeam-RF 1768..2639 19..890 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:41:28 Download gff for BO07938.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13830924..13831100 19..195 100 <- Plus
X 13831168..13831278 196..306 100 <- Plus
X 13831340..13831634 307..601 100 <- Plus
X 13831702..13831990 602..890 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:31:07 Download gff for BO07938.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13724957..13725133 19..195 100 <- Plus
arm_X 13725201..13725311 196..306 100 <- Plus
arm_X 13725373..13725667 307..601 100 <- Plus
arm_X 13725735..13726023 602..890 100   Plus

BO07938.5prime Sequence

826 bp (825 high quality bases) assembled on 2006-01-06

> BO07938.5prime
GAAGTTATCAGTCGACATGTCCTTCGCGGATGATAGCTATAGCTTTGGTC
GCTGCTACGAGTATCAGCCCGATGATTGCAAATGGCAGGCTACAGGACCT
AGACCAGTGGCCACAGCCGCCGTATTGGCCACAAACAGGGAATCATCCAG
CAGCACCGAGGGCCGCGAGTCCGCCGTTACTATGGAGAGAAACGATGCGG
ACATTAACTTTCAACGGGTCTCAATTTCGGGTGAGGACACCAGTGGCGTA
CCGCTCGAGGATTTGGAGCGGGCCTCGACCCTGCTGATCGAGGCACTGCG
CCTGCGTAGCCACTACATGGCCATGTCGGATCAATCGTTTCCCTCGACCA
CGGCTCGATTCCTCAAGACAGTGAAGCTCAAGGATCGCATCAACAATCTG
CCCGTCAAGGAGGTGTCGGAATCTGCAGATGTCCATTTGAGACATTCGCC
AATGAAGATTACGAATCCGTGGAACGTCGAGTTTCCCAATGACGAAGATT
TCAAGATTAAGCCCCTCAACGGAGTGTTTCACATTTACGAGAATGATGAC
GAAAGCAGTGAGATCAAATACGAATATCCAGATATGAGCCAATTCGTAAA
CGACATGCAGGTCATGTGCAATATGATTGCCGATGGGCCATTGAAATCCT
TCTGCTATCGACGTCTCTGTTATCTGTCGTCCAAGTATCAGATGCACGTG
CTCCTCAACGAGCTGCGTGAGCTGGCTGCCCAGAAGGCGGTGCCGCATCG
CGATTTCTACAACACCCGCAAGGTGGACACCCACATCCATGCCGCATCGT
GCATGAACCAAAAGCATCTGCTGCGC

BO07938.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:13:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG32626-PC 2124 CG32626-RC 1..810 17..826 4050 100 Plus
CG32626-PA 2325 CG32626-RA 270..1011 85..826 3710 100 Plus
CG32626-PD 2334 CG32626-RD 279..1020 85..826 3710 100 Plus
CG32626-PB 1959 CG32626-RB 1..645 182..826 3225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
AMPdeam-RC 3216 CG32626-RC 921..1730 17..826 4050 100 Plus
AMPdeam-RJ 2620 CG32626-RJ 393..1134 85..826 3710 100 Plus
AMPdeam-RG 2611 CG32626-RG 393..1125 85..826 3565 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:32:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13834815..13835150 419..84 1680 100 Minus
X 23542271 X 13832490..13832673 826..643 920 100 Minus
X 23542271 X 13832903..13833032 548..419 650 100 Minus
X 23542271 X 13832745..13832840 643..548 480 100 Minus
X 23542271 X 13835377..13835445 85..17 345 100 Minus
Blast to na_te.dros performed on 2015-02-13 16:32:06 has no hits.

BO07938.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:33:11 Download gff for BO07938.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32626-PC 1..810 17..826 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:21:33 Download gff for BO07938.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32626-PC 1..810 17..826 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:13:17 Download gff for BO07938.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32626-RC 913..1730 9..826 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 19:13:17 Download gff for BO07938.5prime
Subject Subject Range Query Range Percent Splice Strand
AMPdeam-RC 913..1730 9..826 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:13:17 Download gff for BO07938.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13834815..13835149 85..419 100 <- Minus
X 13835378..13835449 9..84 94   Minus
X 13832490..13832673 643..826 100 <- Minus
X 13832746..13832840 548..642 100 <- Minus
X 13832904..13833031 420..547 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:13:17 Download gff for BO07938.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13726523..13726706 643..826 100 <- Minus
arm_X 13726779..13726873 548..642 100 <- Minus
arm_X 13726937..13727064 420..547 100 <- Minus
arm_X 13728848..13729182 85..419 100 <- Minus
arm_X 13729411..13729482 9..84 94   Minus

BO07938.complete Sequence

2155 bp (2155 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ630992

> BO07938.complete
GAAGTTATCAGTCGACATGTCCTTCGCGGATGATAGCTATAGCTTTGGTC
GCTGCTACGAGTATCAGCCCGATGATTGCAAATGGCAGGCTACAGGACCT
AGACCAGTGGCCACAGCCGCCGTATTGGCCACAAACAGGGAATCATCCAG
CAGCACCGAGGGCCGCGAGTCCGCCGTTACTATGGAGAGAAACGATGCGG
ACATTAACTTTCAACGGGTCTCAATTTCGGGTGAGGACACCAGTGGCGTA
CCGCTCGAGGATTTGGAGCGGGCCTCGACCCTGCTGATCGAGGCACTGCG
CCTGCGTAGCCACTACATGGCCATGTCGGATCAATCGTTTCCCTCGACCA
CGGCTCGATTCCTCAAGACAGTGAAGCTCAAGGATCGCATCAACAATCTG
CCCGTCAAGGAGGTGTCGGAATCTGCAGATGTCCATTTGAGACATTCGCC
AATGAAGATTACGAATCCGTGGAACGTCGAGTTTCCCAATGACGAAGATT
TCAAGATTAAGCCCCTCAACGGAGTGTTTCACATTTACGAGAATGATGAC
GAAAGCAGTGAGATCAAATACGAATATCCAGATATGAGCCAATTCGTAAA
CGACATGCAGGTCATGTGCAATATGATTGCCGATGGGCCATTGAAATCCT
TCTGCTATCGACGTCTCTGTTATCTGTCGTCCAAGTATCAGATGCACGTG
CTCCTCAACGAGCTGCGTGAGCTGGCTGCCCAGAAGGCGGTGCCGCATCG
CGATTTCTACAACACCCGCAAGGTGGACACCCACATCCATGCCGCATCGT
GCATGAACCAAAAGCATCTGCTGCGCTTCATTAAAAAGACGCTGAAGAAC
AACGCCAACGAGGTGGTCACCGTCACCAATGGCCAGCAAATGACACTGGC
CCAGGTGTTCCAGTCGATGAACCTGACCACCTACGACCTGACCGTCGACA
TGTTGGACGTCCATGCCGATCGCAACACGTTCCATCGCTTCGACAAGTTT
AACTCCAAGTACAATCCCATCGGGGAGTCGCGGCTCAGGGAAGTCTTCCT
GAAGACGGACAACTATCTGAATGGCAAATACTTTGCACAGATCATAAAGG
AAGTGGCCTTCGATCTGGAGGAGTCCAAGTACCAGAACGCCGAGCTGCGT
CTCTCCATCTATGGCAAGTCGCCGGATGAGTGGTACAAACTGGCCAAGTG
GGCCATCGACAATGATGTGTACAGCTCGAACATTCGCTGGCTGATCCAGA
TACCCCGTCTCTTCGACATCTTCAAGTCGAACAAGATGATGAAGTCATTC
CAGGAGATCTTGAACAACATATTCCTGCCGCTCTTCGAGGCGACAGCCCG
ACCCAGTAAGCATCCCGAGTTGCATCGCTTTCTGCAGTACGTGATCGGAT
TCGATTCGGTGGACGATGAGTCCAAGCCGGAGAATCCGCTCTTCGACAAC
GATGTGCCACGTCCGGAGGAGTGGACCTACGAGGAGAATCCGCCCTATGC
CTACTATATCTACTATATGTACGCCAACATGACGGTGCTGAACAAGTTTA
GACAATCTCGCAATATGAACACCTTTGTGCTGCGGCCCCATTGCGGCGAG
GCTGGACCCGTGCAGCATCTGGTTTGCGGCTTCCTCATGGCCGAGAACAT
CTCCCACGGCCTCCTGTTGCGCAAAGTGCCCGTGCTGCAGTATCTGTATT
ATCTGACCCAGATTGGCATCGCCATGTCGCCGCTGTCGAACAACTCCCTG
TTCCTCAACTATCATCGCAATCCGCTGCCAGAGTATTTGGCCCGTGGCCT
CATCATTTCCCTCTCCACGGATGATCCCTTGCAATTCCACTTCACCAAGG
AACCCCTCATGGAGGAGTACAGCATTGCGGCACAGGTGTGGAAGCTCAGC
TCATGCGACATGTGCGAGCTGGCCAGGAACAGTGTGATGATGAGCGGATT
CCCACATGCCATCAAACAGCAGTGGCTGGGACCCATCTATTACGAGGACG
GTATCATGGGCAACGACATCACGCGCACCAATGTGCCAGAGATCCGTGTG
GCCTATCGCTATGAGACACTGCTGGACGAGCTGTCCAACATCTTCAAGGT
GAACCAGACGTGCTCCATTGCAGACATGAACGCCACAGCAAGCTTTCTAG
ACCAT

BO07938.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:50:11
Subject Length Description Subject Range Query Range Score Percent Strand
AMPdeam-RC 2124 CG32626-PC 1..2121 17..2137 10605 100 Plus
AMPdeam-RJ 2334 CG32626-PJ 279..2331 85..2137 10265 100 Plus
AMPdeam-RG 2325 CG32626-PG 279..2322 85..2137 10095 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
AMPdeam-RC 3216 CG32626-RC 921..3041 17..2137 10605 100 Plus
AMPdeam-RJ 2620 CG32626-RJ 393..2445 85..2137 10265 100 Plus
AMPdeam-RG 2611 CG32626-RG 393..2436 85..2137 10095 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:50:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13832216..13832673 1100..643 2290 100 Minus
X 23542271 X 13831702..13832158 1554..1098 2285 100 Minus
X 23542271 X 13834815..13835150 419..84 1680 100 Minus
X 23542271 X 13831339..13831634 1850..1555 1480 100 Minus
X 23542271 X 13830924..13831100 2137..1961 885 100 Minus
X 23542271 X 13832903..13833032 548..419 650 100 Minus
X 23542271 X 13831168..13831280 1960..1848 565 100 Minus
X 23542271 X 13832745..13832840 643..548 480 100 Minus
X 23542271 X 13835377..13835445 85..17 345 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:50:10 has no hits.

BO07938.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:47 Download gff for BO07938.complete
Subject Subject Range Query Range Percent Splice Strand
CG32626-RC 1..2124 17..2138 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:24 Download gff for BO07938.complete
Subject Subject Range Query Range Percent Splice Strand
CG32626-RC 913..3041 9..2137 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:38 Download gff for BO07938.complete
Subject Subject Range Query Range Percent Splice Strand
CG32626-RC 921..3041 17..2139 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:47 Download gff for BO07938.complete
Subject Subject Range Query Range Percent Splice Strand
CG32626-RC 913..3041 9..2137 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:10 Download gff for BO07938.complete
Subject Subject Range Query Range Percent Splice Strand
AMPdeam-RC 921..3041 17..2139 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:10 Download gff for BO07938.complete
Subject Subject Range Query Range Percent Splice Strand
X 13834815..13835149 85..419 100 <- Minus
X 13835378..13835445 17..84 100   Minus
X 13830922..13831100 1961..2139 98 <- Minus
X 13831168..13831278 1850..1960 100 <- Minus
X 13831340..13831634 1555..1849 100 <- Minus
X 13831702..13832156 1100..1554 100 <- Minus
X 13832217..13832673 643..1099 100 <- Minus
X 13832746..13832840 548..642 100 <- Minus
X 13832904..13833031 420..547 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:38 Download gff for BO07938.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13725201..13725311 1850..1960 100 <- Minus
arm_X 13724955..13725133 1961..2139 98 <- Minus
arm_X 13725373..13725667 1555..1849 100 <- Minus
arm_X 13725735..13726189 1100..1554 100 <- Minus
arm_X 13726250..13726706 643..1099 100 <- Minus
arm_X 13726779..13726873 548..642 100 <- Minus
arm_X 13726937..13727064 420..547 100 <- Minus
arm_X 13728848..13729182 85..419 100 <- Minus
arm_X 13729411..13729478 17..84 100   Minus

BO07938.pep Sequence

Translation from 16 to 2155

> BO07938.pep
MSFADDSYSFGRCYEYQPDDCKWQATGPRPVATAAVLATNRESSSSTEGR
ESAVTMERNDADINFQRVSISGEDTSGVPLEDLERASTLLIEALRLRSHY
MAMSDQSFPSTTARFLKTVKLKDRINNLPVKEVSESADVHLRHSPMKITN
PWNVEFPNDEDFKIKPLNGVFHIYENDDESSEIKYEYPDMSQFVNDMQVM
CNMIADGPLKSFCYRRLCYLSSKYQMHVLLNELRELAAQKAVPHRDFYNT
RKVDTHIHAASCMNQKHLLRFIKKTLKNNANEVVTVTNGQQMTLAQVFQS
MNLTTYDLTVDMLDVHADRNTFHRFDKFNSKYNPIGESRLREVFLKTDNY
LNGKYFAQIIKEVAFDLEESKYQNAELRLSIYGKSPDEWYKLAKWAIDND
VYSSNIRWLIQIPRLFDIFKSNKMMKSFQEILNNIFLPLFEATARPSKHP
ELHRFLQYVIGFDSVDDESKPENPLFDNDVPRPEEWTYEENPPYAYYIYY
MYANMTVLNKFRQSRNMNTFVLRPHCGEAGPVQHLVCGFLMAENISHGLL
LRKVPVLQYLYYLTQIGIAMSPLSNNSLFLNYHRNPLPEYLARGLIISLS
TDDPLQFHFTKEPLMEEYSIAAQVWKLSSCDMCELARNSVMMSGFPHAIK
QQWLGPIYYEDGIMGNDITRTNVPEIRVAYRYETLLDELSNIFKVNQTCS
IADMNATASFLDH

BO07938.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
AMPdeam-PC 707 CG32626-PC 1..707 1..707 3742 100 Plus
AMPdeam-PJ 777 CG32626-PJ 94..777 24..707 3602 100 Plus
AMPdeam-PH 789 CG32626-PH 94..789 24..707 3579 98.3 Plus
AMPdeam-PG 774 CG32626-PG 94..774 24..707 3575 99.6 Plus
AMPdeam-PE 771 CG32626-PE 91..771 24..707 3575 99.6 Plus