Clone Sequence Records
BO07945.3prime Sequence
893 bp (850 high quality bases) assembled on 2006-01-06
> BO07945.3prime
ATGGTCTAGAAAGCTTGCGATGATTTTGTGCAGGAACTTGAGGGGATGTA
CACCGGACTTGGGCTTGCCCAGTGTTGGTGGCGGTGGCGGTGTTAGAACC
ATGTCCAGTTCCATGGAGTTTGAGGAGCTAGTAGCCACCTCTCTGCCACT
AGAACCGCTGCTGCATTGCATCGAACTGCTGCACGAGTGACTGGAGTTGC
TGGGCAGACACTGTCCGGTGACCAGTACAAACTCATCATCGTCCTCGGGC
AGTGTGAGTCCGCTGTCGCTGTCACAACTGAAACCAATGCCATCGTCGTA
CTCCTGATCCTCCACATGATGGTCCTGCTCCTGCTCTTCCTCCAGCTCCT
CTTCATCGTCTTCCTCCATTTGTTCGCCATCGTTCACATCCAACTCGAAA
TCACAGTCACACGTCTGCTTCGGCGAGTCCATCTGCGAATCAAAGTCGGA
ATCGCCACCAACTGCGGCCTCCTCATCTCGGGTCTCATGCCCCAAGTTGG
GCGCCATTTGCCCGTCCGATGAGTAGGAGAAATCGCACATGAAATCATTC
TGTAATCCCACGAAAATCGCGCTCTTGGGCGCTTCCAGTATAAAGGAATC
AATGTGATAGATTCCGTCACTCAACGCGGGCACGTCGCGTATTATCTTCT
GATCACGTATTATCTTGCGTATGCAATTGACGATGAACGTAATGACCATT
CCGCCGAGTATCAGGCCAAACACAATCACGATGATGACCACGTGCTCCGA
TTGGCCGGCCGCCTCGCTCGTGCAGCCCTCCTCGTCCCATCGAAATTTAC
AATTGTCTAGGTTATTACATTTTCAATCCTTTGATATGCAGGTCGCGTCC
TCGCAATCGTACTCGTCCTCGGTGCAGGCAGCTCCACGTTCCC
BO07945.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:13:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32635-PA | 2034 | CG32635-RA | 1157..2031 | 893..19 | 4325 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:37:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Neto-RA | 3362 | CG44328-RA | 1753..2627 | 893..19 | 4345 | 99.8 | Minus |
| Neto-RB | 6903 | CG44328-RB | 1753..2011 | 893..635 | 1265 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:37:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13518274..13518891 | 636..19 | 3090 | 100 | Minus |
| X | 23542271 | X | 13506098..13506231 | 769..636 | 670 | 100 | Minus |
| X | 23542271 | X | 13504034..13504144 | 879..769 | 525 | 98.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:37:56 has no hits.
BO07945.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:33:24 Download gff for
BO07945.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32635-PA | 1157..2034 | 18..893 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:21:50 Download gff for
BO07945.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32635-PA | 1157..2034 | 18..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:09:46 Download gff for
BO07945.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Neto-RA | 1753..2627 | 19..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:29:11 Download gff for
BO07945.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Neto-RA | 1753..2627 | 19..893 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:29:11 Download gff for
BO07945.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13504035..13504144 | 769..878 | 98 | -> | Minus |
| X | 13506099..13506230 | 637..768 | 100 | -> | Minus |
| X | 13518274..13518891 | 19..636 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:09:46 Download gff for
BO07945.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13398068..13398177 | 769..878 | 98 | -> | Minus |
| arm_X | 13400132..13400263 | 637..768 | 100 | -> | Minus |
| arm_X | 13412307..13412924 | 19..636 | 100 | | Minus |
BO07945.5prime Sequence
976 bp (808 high quality bases) assembled on 2006-01-06
> BO07945.5prime
GAAGTTATCAGTCGACATGCGAAGAAGAGGAAGCACTTGCAGCGCACAAC
AACCACAGCAGCGGCCACACAAACAGCAGCAGCAGCAGCAGCAGCAAAAT
CAAAGGTTAATCCCCGGCCAACGCTGTTCGCTGCTAATGTTGCTAATTGT
TGGCCAAGCAGTTTACGCTTCTGCCGGCAGTGAGATAATCGCAAATCGTT
CGGCTTCAGCTGGCGAATCGTTGATAATGCTGTCGAATTTCACCGTTGCC
ACGCCGCCTCCCGCCCCAAGATTCACCAGTCCCTTTCGGGAGCAGGATGT
GGCTGAGGGGGAGGAGTTGGCGGGTGGAGGGCAGGTCGATTGGTTGGACG
AGCAGCATCCGCTGACCATTTCCCGACCGCCAAGAGCAGGACGCAGCGAG
CGGCAGGCAGAAGAGGATCAGGTGGACCGCTGTCGTCTCTTTGTCGAGGG
GGATCCCACCAAGAATGAGCTGTACAGCCCCGAGTATCCCAACTTGTATC
CGAAGAACATCAACTGCACCCGGGTGATAACAGCGCCAAAGGGACAAATC
ATACGCCTGGACTTTCGCAACTCGTTTAATATCGAGGCCAAGGAGGGGTG
CAAATTTGATTTTCTCGAAATACGAGATGGCCAGTACGGTTTCTCTACGC
TGATTGGCAAGTTCTGCGGCACCGACTTTCCGCCGGAGATCACCTCGAAG
GAGCGGTATTTGTGGCTTCATTTCCACTCCGACGAGACCATCGAGTACAC
CGGATTCAGTGCGGTCTATGAGTATCTGGACAGGAGTCGGGATGCGCCCA
GCACCGATCTCAGCTGCACCATCGATAAGGGCGGCTTCGAGGGCTTCATC
AACTCCACGGATGTTCCGGCCGAGATCTGGGAGCAGGTCAATCGCAATAA
GATCGCGCTGGACTGCATCTGGCGCATTCAGGTCAAAGAAGAATTGGAAA
ATATTTCTTCAGTTTCTGGACTTTCA
BO07945.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:13:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32635-PA | 2034 | CG32635-RA | 1..920 | 17..936 | 4575 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:08:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Neto-RB | 6903 | CG44328-RB | 597..1552 | 17..973 | 4685 | 99.4 | Plus |
| Neto-RA | 3362 | CG44328-RA | 597..1552 | 17..973 | 4685 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:08:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13495840..13496206 | 167..533 | 1835 | 100 | Plus |
| X | 23542271 | X | 13500494..13500810 | 620..936 | 1570 | 99.7 | Plus |
| X | 23542271 | X | 13483136..13483286 | 17..167 | 755 | 100 | Plus |
| X | 23542271 | X | 13499794..13499883 | 530..619 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:08:10 has no hits.
BO07945.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:33:25 Download gff for
BO07945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32635-PA | 1..957 | 17..975 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:21:52 Download gff for
BO07945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32635-PA | 1..957 | 17..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:46:55 Download gff for
BO07945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Neto-RA | 588..1553 | 8..975 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:06:47 Download gff for
BO07945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Neto-RA | 588..1553 | 8..975 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:06:47 Download gff for
BO07945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13483127..13483286 | 8..167 | 97 | -> | Plus |
| X | 13495841..13496206 | 168..533 | 100 | -> | Plus |
| X | 13499798..13499883 | 534..619 | 100 | -> | Plus |
| X | 13500494..13500823 | 620..950 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:46:55 Download gff for
BO07945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13377160..13377319 | 8..167 | 97 | -> | Plus |
| arm_X | 13389874..13390239 | 168..533 | 100 | -> | Plus |
| arm_X | 13393831..13393916 | 534..619 | 100 | -> | Plus |
| arm_X | 13394527..13394856 | 620..950 | 98 | -> | Plus |
BO07945.complete Sequence
2065 bp (2065 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630993
> BO07945.complete
GAAGTTATCAGTCGACATGCGAAGAAGAGGAAGCACTTGCAGCGCACAAC
AACCACAGCAGCGGCCACACAAACAGCAGCAGCAGCAGCAGCAGCAAAAT
CAAAGGTTAATCCCCGGCCAACGCTGTTCGCTGCTAATGTTGCTAATTGT
TGGCCAAGCAGTTTACGCTTCTGCCGGCAGTGAGATAATCGCAAATCGTT
CGGCTTCAGCTGGCGAATCGTTGATAATGCTGTCGAATTTCACCGTTGCC
ACGCCGCCTCCCGCCCCAAGATTCACCAGTCCCTTTCGGGAGCAGGATGT
GGCTGAGGGGGAGGAGTTGGCGGGTGGAGGGCAGGTCGATTGGTTGGACG
AGCAGCATCCGCTGACCATTTCCCGACCGCCAAGAGCAGGACGCAGCGAG
CGGCAGGCAGAAGAGGATCAGGTGGACCGCTGTCGTCTCTTTGTCGAGGG
GGATCCCACCAAGAATGAGCTGTACAGCCCCGAGTATCCCAACTTGTATC
CGAAGAACATCAACTGCACCCGGGTGATAACAGCGCCAAAGGGACAAATC
ATACGCCTGGACTTTCGCAACTCGTTTAATATCGAGGCCAAGGAGGGGTG
CAAATTTGATTTTCTCGAAATACGAGATGGCCAGTACGGTTTCTCTACGC
TGATTGGCAAGTTCTGCGGCACCGACTTTCCGCCGGAGATCACCTCGAAG
GAGCGGTATTTGTGGCTTCATTTCCACTCCGACGAGACCATCGAGTACAC
CGGATTCAGTGCGGTCTATGAGTATCTGGACAGGAGTCGGGATGCGCCCA
GCACCGATCTCAACTGCACCATCGATAAGGGCGGCTTCGAGGGCTTCATC
AACTCCACGGATGTTCCGGCCGAGATCTGGGAGCAGGTCAATCGCAATAA
GATCGCGCTGGACTGCATCTGGCGCATTCAGGTCAAGGAGAATTGGAAGA
TATTTCTCAAGTTTCTGGACTTCAAGCTGAGCAAGCCGAACGATTGTCAA
ACCAACTTCCTGGATATATTCCCGGAGCAGACGGTGATGCCACTGAGGGT
TAAGAACTTTTGCGGTTCAGCTGGCGAGAGTATTACGGCGGAGTCAAATA
TCCTGCACTTGCGCTTCTACGCAGATCAAACCGCGATTAACTCGACATTT
GGCATTCTGTTCACGGCGTTCCGGGAACGTGGAGCTGCCTGCACCGAGGA
CGAGTACGATTGCGAGGACGCGACCTGCATATCAAAGGATTTGAAATGTA
ATAACCTAGACAATTGTAAATTTCGATGGGACGAGGAGGGCTGCACGAGC
GAGGCGGCCGGCCAATCGGAGCACGTGGTCATCATCGTGATTGTGTTTGG
CCTGATACTCGGCGGAATGGTCATTACGTTCATCGTCAATTGCATACGCA
AGATAATACGTGATCAGAAGATAATACGCGACGTGCCCGCGTTGAGTGAC
GGAATCTATCACATTGATTCCTTTATACTGGAAGCGCCCAAGAGCGCGAT
TTTCGTGGGATTACAGAATGATTTCATGTGCGATTTCTCCTACTCATCGG
ACGGGCAAATGGCGCCCAACTTGGGGCATGAGACCCGAGATGAGGAGGCC
GCAGTTGGTGGCGATTCCGACTTTGATTCGCAGATGGACTCGCCGAAGCA
GACGTGTGACTGTGATTTCGAGTTGGATGTGAACGATGGCGAACAAATGG
AGGAAGACGATGAAGAGGAGCTGGAGGAAGAGCAGGAGCAGGACCATCAT
GTGGAGGATCAGGAGTACGACGATGGCATTGGTTTCAGTTGTGACAGCGA
CAGCGGACTCACACTGCCCGAGGACGATGATGAGTTTGTACTGGTCACCG
GACAGTGTCTGCCCAGCAACTCCAGTCACTCGTGCAGCAGTTCGATGCAA
TGCAGCAGCGGTTCTAGTGGCAGAGAGGTGGCTACTAGCTCCTCAAACTC
CATGGAACTGGACATGGTTCTAACACCGCCACCGCCACCAACACTGGGCA
AGCCCAAGTCCGGTGTACATCCCCTCAAGTTCCTGCACAAAATCATCGCA
AGCTTTCTAGACCAT
BO07945.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:31:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Neto-RA | 2034 | CG44328-PA | 1..2031 | 17..2047 | 10155 | 100 | Plus |
| Neto-RB | 2469 | CG44328-PB | 1..1415 | 17..1431 | 7075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:31:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Neto-RA | 3362 | CG44328-RA | 597..2627 | 17..2047 | 10155 | 100 | Plus |
| Neto-RB | 6903 | CG44328-RB | 597..2011 | 17..1431 | 7075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:31:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13518274..13518891 | 1430..2047 | 3090 | 100 | Plus |
| X | 23542271 | X | 13495840..13496206 | 167..533 | 1835 | 100 | Plus |
| X | 23542271 | X | 13500494..13500823 | 620..949 | 1650 | 100 | Plus |
| X | 23542271 | X | 13483136..13483286 | 17..167 | 755 | 100 | Plus |
| X | 23542271 | X | 13502457..13502598 | 1046..1187 | 710 | 100 | Plus |
| X | 23542271 | X | 13506098..13506231 | 1297..1430 | 670 | 100 | Plus |
| X | 23542271 | X | 13504034..13504144 | 1187..1297 | 555 | 100 | Plus |
| X | 23542271 | X | 13500949..13501049 | 948..1048 | 505 | 100 | Plus |
| X | 23542271 | X | 13499794..13499883 | 530..619 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:31:32 has no hits.
BO07945.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:14 Download gff for
BO07945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32635-RA | 1..2034 | 17..2048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:54:43 Download gff for
BO07945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32635-RA | 594..2624 | 17..2049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:43 Download gff for
BO07945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Neto-RA | 597..2627 | 17..2049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:15 Download gff for
BO07945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32635-RA | 585..2624 | 8..2047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:19:52 Download gff for
BO07945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Neto-RA | 597..2627 | 17..2049 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:19:52 Download gff for
BO07945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13483136..13483286 | 17..167 | 100 | -> | Plus |
| X | 13495841..13496206 | 168..533 | 100 | -> | Plus |
| X | 13499798..13499883 | 534..619 | 100 | -> | Plus |
| X | 13500494..13500823 | 620..949 | 100 | -> | Plus |
| X | 13500951..13501048 | 950..1047 | 100 | -> | Plus |
| X | 13502459..13502598 | 1048..1187 | 100 | -> | Plus |
| X | 13504035..13504144 | 1188..1297 | 100 | -> | Plus |
| X | 13506099..13506230 | 1298..1429 | 100 | -> | Plus |
| X | 13518274..13518891 | 1430..2049 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:43 Download gff for
BO07945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13377169..13377319 | 17..167 | 100 | -> | Plus |
| arm_X | 13389874..13390239 | 168..533 | 100 | -> | Plus |
| arm_X | 13393831..13393916 | 534..619 | 100 | -> | Plus |
| arm_X | 13394527..13394856 | 620..949 | 100 | -> | Plus |
| arm_X | 13394984..13395081 | 950..1047 | 100 | -> | Plus |
| arm_X | 13396492..13396631 | 1048..1187 | 100 | -> | Plus |
| arm_X | 13398068..13398177 | 1188..1297 | 100 | -> | Plus |
| arm_X | 13400132..13400263 | 1298..1429 | 100 | -> | Plus |
| arm_X | 13412307..13412924 | 1430..2049 | 99 | | Plus |
BO07945.pep Sequence
Translation from 16 to 2065
> BO07945.pep
MRRRGSTCSAQQPQQRPHKQQQQQQQQNQRLIPGQRCSLLMLLIVGQAVY
ASAGSEIIANRSASAGESLIMLSNFTVATPPPAPRFTSPFREQDVAEGEE
LAGGGQVDWLDEQHPLTISRPPRAGRSERQAEEDQVDRCRLFVEGDPTKN
ELYSPEYPNLYPKNINCTRVITAPKGQIIRLDFRNSFNIEAKEGCKFDFL
EIRDGQYGFSTLIGKFCGTDFPPEITSKERYLWLHFHSDETIEYTGFSAV
YEYLDRSRDAPSTDLNCTIDKGGFEGFINSTDVPAEIWEQVNRNKIALDC
IWRIQVKENWKIFLKFLDFKLSKPNDCQTNFLDIFPEQTVMPLRVKNFCG
SAGESITAESNILHLRFYADQTAINSTFGILFTAFRERGAACTEDEYDCE
DATCISKDLKCNNLDNCKFRWDEEGCTSEAAGQSEHVVIIVIVFGLILGG
MVITFIVNCIRKIIRDQKIIRDVPALSDGIYHIDSFILEAPKSAIFVGLQ
NDFMCDFSYSSDGQMAPNLGHETRDEEAAVGGDSDFDSQMDSPKQTCDCD
FELDVNDGEQMEEDDEEELEEEQEQDHHVEDQEYDDGIGFSCDSDSGLTL
PEDDDEFVLVTGQCLPSNSSHSCSSSMQCSSGSSGREVATSSSNSMELDM
VLTPPPPPTLGKPKSGVHPLKFLHKIIASFLDH
BO07945.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:45:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Neto-PA | 677 | CG44328-PA | 1..677 | 1..677 | 3604 | 100 | Plus |
| Neto-PB | 822 | CG44328-PB | 1..472 | 1..472 | 2506 | 99.8 | Plus |
| tld-PA | 1067 | CG6868-PA | 492..746 | 154..378 | 250 | 29.6 | Plus |
| tok-PC | 1464 | CG6863-PC | 847..1111 | 146..382 | 247 | 29.3 | Plus |
| tok-PA | 1464 | CG6863-PA | 847..1111 | 146..382 | 247 | 29.3 | Plus |
| tok-PC | 1464 | CG6863-PC | 1169..1434 | 152..423 | 202 | 23 | Plus |
| tld-PA | 1067 | CG6868-PA | 618..873 | 123..350 | 192 | 25.1 | Plus |
| tld-PA | 1067 | CG6868-PA | 389..578 | 166..372 | 184 | 27.3 | Plus |
| tok-PC | 1464 | CG6863-PC | 751..1003 | 166..436 | 183 | 24.5 | Plus |
| tld-PA | 1067 | CG6868-PA | 895..1049 | 124..280 | 163 | 28.9 | Plus |
