Clone Sequence Records
BO07946.3prime Sequence
906 bp (831 high quality bases) assembled on 2006-01-06
> BO07946.3prime
ATGGTCTAGAAAGCTTGCGGAGGCCTGGTCAGAATGATTGTGGGACAGTT
GACGCATGGTAAAGGTGGTTTCTGGTGTGCGGAATCCCTCCTGGATCTTG
TAGATCTCGTTCAATTCCCGAGCACTGCACAACGGAGTGTCCACCTGAGT
GGTTTCGTTAAAGCGAGCGTAGTCGATTTCATAGGCCTGCAGATCCTTGT
TGTACAACACCACTGGATCGAAACGATGTCCCCAAAGGATCTCAGTGTTA
ATATAGCTGGATCTGGCTTGAGTGCTCTGTCCAGTGGACTCCACGGTGCC
CTCTAGGATCACCACGATTTCGAACTTATCCTGCAGCATATCAGTGGCAT
TAAGATTATAGAGCGGTGAGTTCTCGTCGATCTTGTGCTCGATGACCATG
GGCCAGATGAAGAACAAATCAGAGCCGGAGTCATCAGTACCGATCTCCAG
TTCTGTGAAGTACTGTGTCATCACCTCACCCTCCTTGGTGCTCTTTGTCC
TGATCAACTGAGCCCTCACTCCGGCTCCAATGATGTGTGATTTTCGCATG
TCACCCACACGGAACATCAGCGAAAGGGTGCCATCACGTTGGCAAATTAC
GGCGTGTTTGGAGAACAACAAAGTCTGTGCCCGCTGTTTGGCCCTTGTCA
TCTTGGCAAACACTATTCCGGCCATAAATGCTGAAGACATCACGCCATAG
ATGGACTGGAAGCACATCATGAAGATGGCCTCTGGACACTCGGGCGAGGT
GGTTCGGACACCGTAGCCAATAGTGTGCTGCGTTTCAATGGAGAACAGGA
AGCAGGAAGTAAAGCCATCGATGGCCGAAACACAAGGCGCCCAACCAGAT
TCCTCTTGGTTTTCTGGCAAGTGAGGCTCTTCCAAGTCTCCGTGTGTGTA
GATAAT
BO07946.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:13:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4370-PA | 1362 | Irk2-RA | 472..1359 | 906..19 | 4440 | 100 | Minus |
| CG4370-PB | 1314 | Irk2-RB | 424..1311 | 906..19 | 4440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:28:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irk2-RB | 1600 | CG4370-RB | 473..1360 | 906..19 | 4440 | 100 | Minus |
| Irk2-RA | 1894 | CG4370-RA | 767..1654 | 906..19 | 4440 | 100 | Minus |
| Irk2-RD | 2248 | CG4370-RD | 767..1657 | 906..19 | 4400 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:28:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23514377..23515161 | 72..856 | 3925 | 100 | Plus |
| 3R | 32079331 | 3R | 23514271..23514326 | 19..74 | 280 | 100 | Plus |
| 3R | 32079331 | 3R | 23515213..23515264 | 855..906 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:28:37 has no hits.
BO07946.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:33:26 Download gff for
BO07946.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk2-PB | 424..1314 | 18..906 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:21:53 Download gff for
BO07946.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4370-PB | 424..1314 | 18..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:09:18 Download gff for
BO07946.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk2-RA | 767..1659 | 13..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:04:40 Download gff for
BO07946.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk2-RA | 767..1659 | 13..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:04:40 Download gff for
BO07946.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23515213..23515264 | 855..906 | 100 | | Plus |
| 3R | 23514266..23514323 | 13..71 | 94 | <- | Plus |
| 3R | 23514377..23515159 | 72..854 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:09:18 Download gff for
BO07946.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19339988..19340045 | 13..71 | 94 | <- | Plus |
| arm_3R | 19340099..19340881 | 72..854 | 100 | <- | Plus |
| arm_3R | 19340935..19340986 | 855..906 | 100 | | Plus |
BO07946.5prime Sequence
936 bp (792 high quality bases) assembled on 2006-01-06
> BO07946.5prime
GAAGTTATCAGTCGACATGCGTTTCAATTTCTCCACCCACTCGGCGGCCC
CCACCTCTACGACCATACCAACAACAACACAGGCAAATGGAGGCGAACAG
GCCACCCAACCGCTCAAGAAGGCCATCGAAGCGGATCCCGATTCGCTGGA
CAGTGTGATCAGCAATCCTCAATCCTATCCCATCACAATTGTGCCGAATA
GGCCGACCAGCTACTATGGCCTATCCCAAAATGGCAAGCCGTTCCCCCGC
CAACCGAGCTGCAGATCTCGCAATTTCCGGCCTGGCAGCATGAGACGTGT
TCGCCGACGAGCGGTCTTCAAAAATGGTGACTGCAATGTGGTGCAGAAGC
ACCTGCAAAGACGCCGAGTTCGTTTCCTGCAGGACATGTACACCACCATG
GTGGATTGGCAGTGGCGGTGGACTCTCTTGGCCTTCGCACTCAGCTTTAT
CCTGTCTTGGCTCTTCTTTGCTCTCATCTGGTGGCTGATTATCTACACAC
ACGGAGACTTGGAAGAGCCTCACTTGCCAGAAAACCAAGAGGAATCTGGT
TGGGCGCCTTGTGTTTCGGCCATCGATGGCTTTACTTCCTGCTTCCTGTT
CTCCATTGAAACGCAGCACACTATTGGCTACGGTGTCCGAACCACCTCGC
CCGAGTGTCCAGAGGCCATCTTCATGATGTGCTTCCAGTCCATCTATGGC
GTGATGTCTTCAGCATTTATGGCCGGAATAGTGTTTGCCAAGATGACAAG
GGCCAAACAGCGGGCACAGACTTTGTTGTTCTCAAACACGCCGTAATTTG
CCAACGTGATGGCACCCTTTCGCTGATGTTCCGTGTGGGTGACATGCGAA
AATCACACATCATTGGAGCCGGAGTGAGGGCTCAGTTGATCAGGACAAAG
AGCACCAAGGAGGGTGAGGTGATGACACAGTACTTC
BO07946.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:13:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4370-PA | 1362 | Irk2-RA | 1..767 | 17..783 | 3835 | 100 | Plus |
| CG4370-PB | 1314 | Irk2-RB | 200..719 | 264..783 | 2600 | 100 | Plus |
| CG4370-PA | 1362 | Irk2-RA | 768..921 | 783..936 | 770 | 100 | Plus |
| CG4370-PB | 1314 | Irk2-RB | 720..873 | 783..936 | 770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:06:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irk2-RD | 2248 | CG4370-RD | 296..1216 | 17..936 | 4580 | 99.9 | Plus |
| Irk2-RA | 1894 | CG4370-RA | 296..1216 | 17..936 | 4580 | 99.9 | Plus |
| Irk2-RC | 1485 | CG4370-RC | 249..922 | 264..936 | 3345 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:06:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23514762..23515161 | 936..538 | 1950 | 99.8 | Minus |
| 3R | 32079331 | 3R | 23515213..23515490 | 539..262 | 1390 | 100 | Minus |
| 3R | 32079331 | 3R | 23518458..23518705 | 264..17 | 1240 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:06:18 has no hits.
BO07946.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:33:27 Download gff for
BO07946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk2-PA | 1..921 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:21:55 Download gff for
BO07946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4370-PA | 1..921 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:57:39 Download gff for
BO07946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk2-RA | 296..1216 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:06:36 Download gff for
BO07946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk2-RA | 296..1216 | 17..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:06:36 Download gff for
BO07946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23518458..23518710 | 9..264 | 98 | | Minus |
| 3R | 23514762..23515159 | 540..936 | 99 | <- | Minus |
| 3R | 23515213..23515487 | 265..539 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:57:39 Download gff for
BO07946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19340484..19340881 | 540..936 | 99 | <- | Minus |
| arm_3R | 19340935..19341209 | 265..539 | 100 | <- | Minus |
| arm_3R | 19344180..19344432 | 9..264 | 98 | | Minus |
BO07946.complete Sequence
1393 bp (1393 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630994
> BO07946.complete
GAAGTTATCAGTCGACATGCGTTTCAATTTCTCCACCCACTCGGCGGCCC
CCACCTCTACGACCATACCAACAACAACACAGGCAAATGGAGGCGAACAG
GCCACCCAACCGCTCAAGAAGGCCATCGAAGCGGATCCCGATTCGCTGGA
CAGTGTGATCAGCAATCCTCAATCCTATCCCATCACAATTGTGCCGAATA
GGCCGACCAGCTACTATGGCCTATCCCAAAATGGCAAGCCGTTCCCCCGC
CAACCGAGCTGCAGATCTCGCAATTTCCGGCCTGGCAGCATGAGACGTGT
TCGCCGACGAGCGGTCTTCAAAAATGGTGACTGCAATGTGGTGCAGAAGC
ACCTGCAAAGACGCCGAGTTCGTTTCCTGCAGGACATGTACACCACCATG
GTGGATTGGCAGTGGCGGTGGACTCTCTTGGCCTTCGCACTCAGCTTTAT
CCTGTCTTGGCTCTTCTTTGCTCTCATCTGGTGGCTGATTATCTACACAC
ACGGAGACTTGGAAGAGCCTCACTTGCCAGAAAACCAAGAGGAATCTGGT
TGGGCGCCTTGTGTTTCGGCCATCGATGGCTTTACTTCCTGCTTCCTGTT
CTCCATTGAAACGCAGCACACTATTGGCTACGGTGTCCGAACCACCTCGC
CCGAGTGTCCAGAGGCCATCTTCATGATGTGCTTCCAGTCCATCTATGGC
GTGATGTCTTCAGCATTTATGGCCGGAATAGTGTTTGCCAAGATGACAAG
GGCCAAACAGCGGGCACAGACTTTGTTGTTCTCCAAACACGCCGTAATTT
GCCAACGTGATGGCACCCTTTCGCTGATGTTCCGTGTGGGTGACATGCGA
AAATCACACATCATTGGAGCCGGAGTGAGGGCTCAGTTGATCAGGACAAA
GAGCACCAAGGAGGGTGAGGTGATGACACAGTACTTCACAGAACTGGAGA
TCGGTACTGATGACTCCGGCTCTGATTTGTTCTTCATCTGGCCCATGGTC
ATCGAGCACAAGATCGACGAGAACTCACCGCTCTATAATCTTAATGCCAC
TGATATGCTGCAGGATAAGTTCGAAATCGTGGTGATCCTAGAGGGCACCG
TGGAGTCCACTGGACAGAGCACTCAAGCCAGATCCAGCTATATTAACACT
GAGATCCTTTGGGGACATCGTTTCGATCCAGTGGTGTTGTACAACAAGGA
TCTGCAGGCCTATGAAATCGACTACGCTCGCTTTAACGAAACCACTCAGG
TGGACACTCCGTTGTGCAGTGCTCGGGAATTGAACGAGATCTACAAGATC
CAGGAGGGATTCCGCACACCAGAAACCACCTTTACCATGCGTCAACTGTC
CCACAATCATTCTGACCAGGCCTCCGCAAGCTTTCTAGACCAT
BO07946.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irk2-RA | 1362 | CG4370-PA | 1..1359 | 17..1375 | 6795 | 100 | Plus |
| Irk2-RD | 1365 | CG4370-PD | 1..1362 | 17..1375 | 6730 | 99.8 | Plus |
| Irk2-RB | 1314 | CG4370-PB | 200..1311 | 264..1375 | 5560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irk2-RA | 1894 | CG4370-RA | 296..1654 | 17..1375 | 6795 | 100 | Plus |
| Irk2-RD | 2248 | CG4370-RD | 296..1657 | 17..1375 | 6730 | 99.8 | Plus |
| Irk2-RB | 1600 | CG4370-RB | 249..1360 | 264..1375 | 5560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23514377..23515161 | 1322..538 | 3925 | 100 | Minus |
| 3R | 32079331 | 3R | 23515213..23515490 | 539..262 | 1390 | 100 | Minus |
| 3R | 32079331 | 3R | 23518458..23518705 | 264..17 | 1240 | 100 | Minus |
| 3R | 32079331 | 3R | 23514271..23514326 | 1375..1320 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:39:57 has no hits.
BO07946.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:55 Download gff for
BO07946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk2-RA | 1..1362 | 17..1376 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:15 Download gff for
BO07946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk2-RA | 296..1659 | 17..1381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:32 Download gff for
BO07946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk2-RA | 296..1654 | 17..1377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:56 Download gff for
BO07946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk2-RA | 296..1659 | 17..1381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:07 Download gff for
BO07946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk2-RA | 296..1654 | 17..1377 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:07 Download gff for
BO07946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23514269..23514323 | 1323..1377 | 96 | <- | Minus |
| 3R | 23514377..23515159 | 540..1322 | 100 | <- | Minus |
| 3R | 23515213..23515487 | 265..539 | 100 | <- | Minus |
| 3R | 23518458..23518705 | 17..264 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:32 Download gff for
BO07946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19339991..19340045 | 1323..1377 | 96 | <- | Minus |
| arm_3R | 19340099..19340881 | 540..1322 | 100 | <- | Minus |
| arm_3R | 19340935..19341209 | 265..539 | 100 | <- | Minus |
| arm_3R | 19344180..19344427 | 17..264 | 100 | | Minus |
BO07946.pep Sequence
Translation from 16 to 1393
> BO07946.pep
MRFNFSTHSAAPTSTTIPTTTQANGGEQATQPLKKAIEADPDSLDSVISN
PQSYPITIVPNRPTSYYGLSQNGKPFPRQPSCRSRNFRPGSMRRVRRRAV
FKNGDCNVVQKHLQRRRVRFLQDMYTTMVDWQWRWTLLAFALSFILSWLF
FALIWWLIIYTHGDLEEPHLPENQEESGWAPCVSAIDGFTSCFLFSIETQ
HTIGYGVRTTSPECPEAIFMMCFQSIYGVMSSAFMAGIVFAKMTRAKQRA
QTLLFSKHAVICQRDGTLSLMFRVGDMRKSHIIGAGVRAQLIRTKSTKEG
EVMTQYFTELEIGTDDSGSDLFFIWPMVIEHKIDENSPLYNLNATDMLQD
KFEIVVILEGTVESTGQSTQARSSYINTEILWGHRFDPVVLYNKDLQAYE
IDYARFNETTQVDTPLCSARELNEIYKIQEGFRTPETTFTMRQLSHNHSD
QASASFLDH
BO07946.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irk2-PA | 453 | CG4370-PA | 1..453 | 1..453 | 2396 | 100 | Plus |
| Irk2-PD | 454 | CG4370-PD | 1..454 | 1..453 | 2384 | 99.8 | Plus |
| Irk2-PB | 437 | CG4370-PB | 68..437 | 84..453 | 1957 | 100 | Plus |
| Irk2-PC | 451 | CG4370-PC | 68..429 | 84..445 | 1868 | 97.8 | Plus |
| Irk1-PH | 526 | CG44159-PH | 10..384 | 91..459 | 1073 | 56.8 | Plus |
