Clone BO07950 Report

Search the DGRC for BO07950

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:79
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG31344-RA
Protein status:BO07950.pep: validated full length
Sequenced Size:1243

Clone Sequence Records

BO07950.3prime Sequence

880 bp (830 high quality bases) assembled on 2006-01-06

> BO07950.3prime
ATGGTCTAGAAAGCTTGCATCGTCCTTCAAGCCCAGGGCAAAGTCTTGGG
CTTCCCCGCCATTCCTGAAAATCCGCACATACGCGGACTTCGGGCCAAAC
TTCCAAATGGCGACGTAGGGCAAGTAATAGGTGAATATGTCCACCAGCCA
GACGCGGAAGTTCAAGTACCATCGCACCAGGGCATACCTGTGCAGATATG
TGACGAGGAACAGGCCGTAGCTGACTATGAATCGGTCCCACCATCCCATG
TCGTAGTAGTGCAGCTTCTGCTGGGGATCCTGCGCCACTCCGTTCTCATG
ATCGAAACTGTAGTACTCGTATCCCTTAACGCAGGCCAATCGCTTGGCAA
AGAATATGTTGGCATTCACCGACAGCATGGTGTTTATGTGCCACAAGCCA
TTAATCAGGGCCTCGGTCATTCGTTTGAAATCCTCCCCAGTGTTTGCCAG
AGCTGGTTCGTATACCTTACGCATCACAATGTCCAGGCGGAGCTTTGACT
CCGCCCAGTTCCTACCGCAGATGTTGTACTCATCCTTGATGCCCAGCAGA
TAGCCGAGAACGCGCCACATATGCGTAGTGGCCTCCAGGAAGTCCTGATC
TTTCAGCTTTATGCGATGTGCGCCCATCGTTATGAAGCCAATGAAACCGA
ACTGCGTGAGCGCCAAATCCTTCTGGGTGATCTGTCCAGCTCCTTGGCGG
GCGCACGCATGACTGGAGCGGCTGTGGGCCCGCCTCACGGCCGCAATGCT
GGTCCAGAACCTGCTGCCACGGTCCGCGATGTTGTGGTTATACCAGGCTT
GCGTGTGGAATATAGTACGCACATAGCGACGGTAGGCGGTGAACGCTGTC
GAGGATTGGCGTGTGCACGACAGCACCCGG

BO07950.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG31344-PA 1212 CG31344-RA 348..1209 880..19 4310 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:32:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG31344-RA 1450 CG31344-RA 531..1392 880..19 4310 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15223436..15224297 19..880 4310 100 Plus
Blast to na_te.dros performed on 2015-02-13 16:32:25 has no hits.

BO07950.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:33:34 Download gff for BO07950.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31344-PA 348..1212 18..880 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:22:04 Download gff for BO07950.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31344-PA 348..1212 18..880 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:13:22 Download gff for BO07950.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31344-RA 531..1392 19..880 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 19:14:47 Download gff for BO07950.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31344-RA 531..1392 19..880 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:14:47 Download gff for BO07950.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15223436..15224297 19..880 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:13:22 Download gff for BO07950.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11049158..11050019 19..880 100   Plus

BO07950.5prime Sequence

874 bp (774 high quality bases) assembled on 2006-01-06

> BO07950.5prime
GAAGTTATCAGTCGACATGCAGGTTGATGGTTGTACCAGCAGCTCATCCG
AGATCCCCCATCCCGCGAAGCGTGAAACGTGGATCAGTGGGAAAATGCAG
TCGTCATCGCATTCCAAAGATGGTCATAATGCAGCGGGGGCTTCAAAACT
GCTTCAGGATCACCAGGAGCCCGAGGACTACTTGGAGCACCTAATGAAGG
AGGGCAGTCAGGAGGGCGACAGCGGTGCTGATTTGGAGCTACCTTCGTGG
TACGATGAGCAGCTATTCAGGCGTGGTCAGAGCTACTTTAGCACGTATCG
CTTTGTAATGAACGCCGGAATGCTGGCTGGTCTTATTGCCGTGCTGGCTA
TTCCATCCATTCTCCGGGTGCTGTCGTGCACACGCCAATCCTCGACAGCG
TTCACCGCCTACCGTCGCTATGTGCGTACTATATTCCACACGCAAGCCTG
GTATAACCACAACATCGCGGACCGTGGCAGCAGGTTCTGGACCAGCATTG
CGGCCGTGAGGCGGGCCCACAGCCGCTCCAGTCATGCGTGCGCCCGCCAA
GGAGCTGGACAGATCACCCAGAAGGATTTGGCGCTCACGCAGTTCGGTTT
CATTGGCTTCATAACGATGGGCGCACATCGCATAAAGCTGAAAGATCAGG
ACTTCCTGGAGGCCACTACGCATATGTGGCGCGTTCTCGGCTATCTGCTG
GGCATCAAGGATGAGTACAACATCTGCGGTAGGAACTGGGCGGAGTCAAA
GCTCCGCCTGGACATTGTGATGCGTAAGGTATACGAACCAGCTCTGGCAA
ACACTGGGGAGGATTTCAAACGAATGACCGAGGCCCTGATTAATGGCTTG
TGGCACATAAACACCATGCTGTCG

BO07950.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG31344-PA 1212 CG31344-RA 1..858 17..874 4290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:04:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG31344-RA 1450 CG31344-RA 180..1041 13..874 4310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:04:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15223787..15224388 874..273 3010 100 Minus
3R 32079331 3R 15224742..15224934 273..81 965 100 Minus
3R 32079331 3R 15225082..15225150 81..13 345 100 Minus
Blast to na_te.dros performed on 2015-02-11 22:04:26 has no hits.

BO07950.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:33:35 Download gff for BO07950.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31344-PA 1..858 17..874 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:22:06 Download gff for BO07950.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31344-PA 1..858 17..874 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:46:57 Download gff for BO07950.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31344-RA 174..1041 5..874 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:58:06 Download gff for BO07950.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31344-RA 174..1041 5..874 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:58:06 Download gff for BO07950.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15223787..15224387 274..874 100 <- Minus
3R 15224742..15224934 81..273 100 <- Minus
3R 15225083..15225156 5..80 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:46:57 Download gff for BO07950.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11049509..11050109 274..874 100 <- Minus
arm_3R 11050464..11050656 81..273 100 <- Minus
arm_3R 11050805..11050878 5..80 94   Minus

BO07950.complete Sequence

1243 bp (1243 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630995

> BO07950.complete
GAAGTTATCAGTCGACATGCAGGTTGATGGTTGTACCAGCAGCTCATCCG
AGATCCCCCATCCCGCGAAGCGTGAAACGTGGATCAGTGGGAAAATGCAG
TCGTCATCGCATTCCAAAGATGGTCATAATGCAGCGGGGGCTTCAAAACT
GCTTCAGGATCACCAGGAGCCCGAGGACTACTTGGAGCACCTAATGAAGG
AGGGCAGTCAGGAGGGCGACAGCGGTGCTGATTTGGAGCTACCTTCGTGG
TACGATGAGCAGCTATTCAGGCGTGGTCAGAGCTACTTTAGCACGTATCG
CTTTGTAATGAACGCCGGAATGCTGGCTGGTCTTATTGCCGTGCTGGCTA
TTCCATCCATTCTCCGGGTGCTGTCGTGCACACGCCAATCCTCGACAGCG
TTCACCGCCTACCGTCGCTATGTGCGTACTATATTCCACACGCAAGCCTG
GTATAACCACAACATCGCGGACCGTGGCAGCAGGTTCTGGACCAGCATTG
CGGCCGTGAGGCGGGCCCACAGCCGCTCCAGTCATGCGTGCGCCCGCCAA
GGAGCTGGACAGATCACCCAGAAGGATTTGGCGCTCACGCAGTTCGGTTT
CATTGGCTTCATAACGATGGGCGCACATCGCATAAAGCTGAAAGATCAGG
ACTTCCTGGAGGCCACTACGCATATGTGGCGCGTTCTCGGCTATCTGCTG
GGCATCAAGGATGAGTACAACATCTGCGGTAGGAACTGGGCGGAGTCAAA
GCTCCGCCTGGACATTGTGATGCGTAAGGTATACGAACCAGCTCTGGCAA
ACACTGGGGAGGATTTCAAACGAATGACCGAGGCCCTGATTAATGGCTTG
TGGCACATAAACACCATGCTGTCGGTGAATGCCAACATATTCTTTGCCAA
GCGATTGGCCTGCGTTAAGGGATACGAGTACTACAGTTTCGATCATGAGA
ACGGAGTGGCGCAGGATCCCCAGCAGAAGCTGCACTACTACGACATGGGA
TGGTGGGACCGATTCATAGTCAGCTACGGCCTGTTCCTCGTCACATATCT
GCACAGGTATGCCCTGGTGCGATGGTACTTGAACTTCCGCGTCTGGCTGG
TGGACATATTCACCTATTACTTGCCCTACGTCGCCATTTGGAAGTTTGGC
CCGAAGTCCGCGTATGTGCGGATTTTCAGGAATGGCGGGGAAGCCCAAGA
CTTTGCCCTGGGCTTGAAGGACGATGCAAGCTTTCTAGACCAT

BO07950.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:21:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG31344-RA 1212 CG31344-PA 1..1209 17..1225 6045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:21:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG31344-RA 1450 CG31344-RA 180..1392 13..1225 6065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15223436..15224388 1225..273 4765 100 Minus
3R 32079331 3R 15224742..15224934 273..81 965 100 Minus
3R 32079331 3R 15225082..15225150 81..13 345 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:21:03 has no hits.

BO07950.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:57 Download gff for BO07950.complete
Subject Subject Range Query Range Percent Splice Strand
CG31344-RA 1..1212 17..1226 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:17 Download gff for BO07950.complete
Subject Subject Range Query Range Percent Splice Strand
CG31344-RA 267..1485 5..1225 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:39:58 Download gff for BO07950.complete
Subject Subject Range Query Range Percent Splice Strand
CG31344-RA 184..1392 17..1227 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:57 Download gff for BO07950.complete
Subject Subject Range Query Range Percent Splice Strand
CG31344-RA 267..1485 5..1225 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:37 Download gff for BO07950.complete
Subject Subject Range Query Range Percent Splice Strand
CG31344-RA 184..1392 17..1227 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:37 Download gff for BO07950.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15224742..15224934 81..273 100 <- Minus
3R 15225083..15225146 17..80 100   Minus
3R 15223434..15224387 274..1227 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:39:58 Download gff for BO07950.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11049156..11050109 274..1227 99 <- Minus
arm_3R 11050464..11050656 81..273 100 <- Minus
arm_3R 11050805..11050868 17..80 100   Minus

BO07950.pep Sequence

Translation from 16 to 1243

> BO07950.pep
MQVDGCTSSSSEIPHPAKRETWISGKMQSSSHSKDGHNAAGASKLLQDHQ
EPEDYLEHLMKEGSQEGDSGADLELPSWYDEQLFRRGQSYFSTYRFVMNA
GMLAGLIAVLAIPSILRVLSCTRQSSTAFTAYRRYVRTIFHTQAWYNHNI
ADRGSRFWTSIAAVRRAHSRSSHACARQGAGQITQKDLALTQFGFIGFIT
MGAHRIKLKDQDFLEATTHMWRVLGYLLGIKDEYNICGRNWAESKLRLDI
VMRKVYEPALANTGEDFKRMTEALINGLWHINTMLSVNANIFFAKRLACV
KGYEYYSFDHENGVAQDPQQKLHYYDMGWWDRFIVSYGLFLVTYLHRYAL
VRWYLNFRVWLVDIFTYYLPYVAIWKFGPKSAYVRIFRNGGEAQDFALGL
KDDASFLDH

BO07950.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG31344-PA 403 CG31344-PA 1..403 1..403 2161 100 Plus