Clone Sequence Records
BO07959.3prime Sequence
935 bp (735 high quality bases) assembled on 2006-01-06
> BO07959.3prime
ATGGTCTAGAAAGCTTGCATCTCCCTCCGCCGTAGAGTTATCCGAGTTGT
CCGGACTGCACGGACTTCCGCCTCCGCCAGAAGCTCCACCTCTCACATTC
AGGCTGTTGTGGAGCATGTTAGCGATGCTATCCACATCCAGATTCTCGTC
CGTGGCGGAGATCTTTCGCAGTGCCGAGCAGACAATGCTGAGATCGCCTC
TGAGTTCGCTGACCACCGCTGTGATCTTCTTGGCATTCGACAGGACTTCA
ACACTCATCGTGTACGGGTTGTAGCGCACTCCAAATGGCCGTTGGATGCT
CTCGGCAAAAGCTCTCATTTGCTCCTTGGCCTCCTCGAAGGAATCGGTGT
AGTAGTAGGCATTCTGGTAGGAGGTGATGATGCACTCCTGCTGGCACGTC
ACCTCCGGGTCGAACTTCTTTATCTTATTCTCCGCCGTAATGGCATGCTG
CAACTCGGCCACTGAGCTCAGAAGTCCGGCTCCATACACCTTAAATGTGC
TGTCCGCCTGTTTGCACAGCCCAAATTCCACAGTAAAGAAGTAGAGCGTA
GCCAACTTCTCGATATCCGCGTCGCTTGCACCCAAAGATGCAAGGCCAAT
CTCCTGTGAAAACTGGGCAAAACTGGAGTTGGCCAGCAGGGGCATGTGGC
CCAGTAGCTCGTGGCAACAGTCCGGTTCTGGTGTGTAGAATGGATCCGAG
GAGTGTCGAATGTACTGGGTGCAGTGGAACACGCGGAAGGCGAGTCCCGA
AAGGAAGTCCCTTGGGGAGAGGTAACCCGCCACAGGCCTGAGCTGGAATC
CCGTCTTGCGCTTGAGATAGACACTCACATCCTGCAACTGGGGAACGTTG
TCCTCGCGGTAGCCACAGTACTTCTCCAGCTCCCGGCAGTTGTCCATGTA
CTCAGGCACAGCATGCAACACGTAGAGGCGGTGGA
BO07959.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9122-PA | 1668 | Trh-RA | 749..1665 | 935..19 | 4535 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:32:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trh-RA | 2183 | CG9122-RA | 832..1748 | 935..19 | 4555 | 99.8 | Minus |
ple-RC | 3806 | CG10118-RC | 1677..1828 | 663..512 | 265 | 78.3 | Minus |
ple-RB | 3124 | CG10118-RB | 1677..1828 | 663..512 | 265 | 78.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:32:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1190819..1191115 | 19..315 | 1485 | 100 | Plus |
3L | 28110227 | 3L | 1191824..1192086 | 673..935 | 1285 | 99.2 | Plus |
3L | 28110227 | 3L | 1191173..1191406 | 314..547 | 1170 | 100 | Plus |
3L | 28110227 | 3L | 1191465..1191591 | 547..673 | 635 | 100 | Plus |
3L | 28110227 | 3L | 6715717..6715824 | 556..663 | 240 | 81.5 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:32:33 has no hits.
BO07959.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:33:49 Download gff for
BO07959.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trh-PA | 750..1668 | 18..934 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:22:25 Download gff for
BO07959.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9122-PA | 750..1668 | 18..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:13:24 Download gff for
BO07959.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trh-RA | 833..1748 | 19..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 19:15:11 Download gff for
BO07959.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trh-RA | 833..1748 | 19..934 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:15:11 Download gff for
BO07959.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1190819..1191113 | 19..313 | 100 | <- | Plus |
3L | 1191173..1191405 | 314..546 | 100 | <- | Plus |
3L | 1191465..1191591 | 547..673 | 100 | <- | Plus |
3L | 1191825..1192085 | 674..934 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:13:24 Download gff for
BO07959.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1190819..1191113 | 19..313 | 100 | <- | Plus |
arm_3L | 1191173..1191405 | 314..546 | 100 | <- | Plus |
arm_3L | 1191465..1191591 | 547..673 | 100 | <- | Plus |
arm_3L | 1191825..1192085 | 674..934 | 99 | | Plus |
BO07959.5prime Sequence
880 bp (727 high quality bases) assembled on 2006-01-06
> BO07959.5prime
GAAGTTATCAGTCGACATGAGTGCTTCCGGGAAGAGTCTTCTGGGCCTGT
GGCTCTACAGGAGTGGCGAACAGGAGTGGGCCGTCAAGCAGGGAAGTCCC
TTGCACCAGCTTAAAAAGGATTCCACCACATCCGGCTCCAGCTCGCATCC
AAGTCTCGGCAGAAACGCCTCCGCTCCGCCGGAGCCGCCAAGGCTGGCCA
TCGGTGGTGGTGGTCAGGATAATGGAAGACAGCATTCCCCTGGCGAACGC
ATCTCCATCATTTTCACCCTGCGTAACCAGGTGGGAAACCTGGCCAGAGC
CCTCCAGGTTTTCCAGGAGCTGGGCATCAATGTGCTGCATTTGGAGCTAT
CGCCGCTTGAGATGGCCACCAACCAGGCGGATGTCCTCGTGGATGTGGAG
TGCGATCAGCGTCGACTCGACCAGGTGGTCAAGATGCTCAACCGAGAGGT
GGCCTCTGTGAACTACACTTCCGTGAACACGCAGGGATTGGCCAGGGCTC
CGTCGCTATCGGCGTGCTCCAGTTTTGACTTCGGCGATATGGTGTGGTTT
CCGCGAAAGATTTCCGATTTGGACAAGGCGCAGAATGTGCTCATGTACGG
CTCGGAGTTGGATGCCGACCATCCAGGATTCAAGGACCCCGTGTACCGTA
AACGGCGAGAGCAGTTCTCGGCCATTGCCAACAACTTCAAGCATGGCAAC
CCCATTCCACGTGTGCAATACACACCTGAGGAGGTGAAAACCTGGGGCAC
CGTTTTCTTGGAGCTCCACCGCCTCTACGTGTTGCATGCTGTGCCTGAGT
ACATGGACAACTGGCCGGAGCTGGAGAAGTACTGTGGCTACCGCGAGGAA
CACGTTCCCCAGTTGCAGGATGTGAGTGTC
BO07959.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9122-PA | 1668 | Trh-RA | 1..864 | 17..880 | 4270 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:01:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trh-RA | 2183 | CG9122-RA | 84..947 | 17..880 | 4290 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:01:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1192580..1193090 | 527..17 | 2555 | 100 | Minus |
3L | 28110227 | 3L | 1192308..1192478 | 693..523 | 840 | 99.4 | Minus |
3L | 28110227 | 3L | 1191971..1192107 | 880..744 | 655 | 98.5 | Minus |
3L | 28110227 | 3L | 1192183..1192234 | 745..694 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:01:24 has no hits.
BO07959.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:33:49 Download gff for
BO07959.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trh-PA | 1..864 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:22:27 Download gff for
BO07959.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9122-PA | 1..864 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:24:00 Download gff for
BO07959.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trh-RA | 79..947 | 9..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:25:29 Download gff for
BO07959.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trh-RA | 79..947 | 9..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:25:29 Download gff for
BO07959.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1191971..1192106 | 745..880 | 98 | <- | Minus |
3L | 1192184..1192234 | 694..744 | 100 | <- | Minus |
3L | 1192308..1192473 | 528..693 | 100 | <- | Minus |
3L | 1192580..1193095 | 9..527 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:24:00 Download gff for
BO07959.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1191971..1192106 | 745..880 | 98 | <- | Minus |
arm_3L | 1192184..1192234 | 694..744 | 100 | <- | Minus |
arm_3L | 1192308..1192473 | 528..693 | 100 | <- | Minus |
arm_3L | 1192580..1193095 | 9..527 | 99 | | Minus |
BO07959.complete Sequence
1699 bp (1699 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630998
> BO07959.complete
GAAGTTATCAGTCGACATGAGTGCTTCCGGGAAGAGTCTTCTGGGCCTGT
GGCTCTACAGGAGTGGCGAACAGGAGTGGGCCGTCAAGCAGGGAAGTCCC
TTGCACCAGCTTAAAAAGGATTCCACCACATCCGGCTCCAGCTCGCATCC
AAGTCTCGGCAGAAACGCCTCCGCTCCGCCGGAGCCGCCAAGGCTGGCCA
TCGGTGGTGGTGGTCAGGATAATGGAAGACAGCATTCCCCTGGCGAACGC
ATCTCCATCATTTTCACCCTGCGTAACCAGGTGGGAAACCTGGCCAGAGC
CCTCCAGGTTTTCCAGGAGCTGGGCATCAATGTGCTGCATTTGGAGCTAT
CGCCGCTTGAGATGGCCACCAACCAGGCGGATGTCCTCGTGGATGTGGAG
TGCGATCAGCGTCGACTCGACCAGGTGGTCAAGATGCTCAACCGAGAGGT
GGCCTCTGTGAACTACACTTCCGTGAACACGCAGGGATTGGCCAGGGCTC
CGTCGCTATCGGCGTGCTCCAGTTTTGACTTCGGCGATATGGTGTGGTTT
CCGCGAAAGATTTCCGATTTGGACAAGGCGCAGAATGTGCTCATGTACGG
CTCGGAGTTGGATGCCGACCATCCAGGATTCAAGGACCCCGTGTACCGTA
AACGGCGAGAGCAGTTCTCGGCCATTGCCAACAACTTCAAGCATGGCAAC
CCCATTCCACGTGTGCAATACACACCTGAGGAGGTGAAAACCTGGGGCAC
CGTTTTCTTGGAGCTCCACCGCCTCTACGTGTTGCATGCTGTGCCTGAGT
ACATGGACAACTGGCCGGAGCTGGAGAAGTACTGTGGCTACCGCGAGGAC
AACGTTCCCCAGTTGCAGGATGTGAGTGTCTATCTCAAGCGCAAGACGGG
ATTCCAGCTCAGGCCTGTGGCGGGTTACCTCTCCCCAAGGGACTTCCTTT
CGGGACTCGCCTTCCGCGTGTTCCACTGCACCCAGTACATTCGACACTCC
TCGGATCCATTCTACACACCAGAACCGGACTGTTGCCACGAGCTACTGGG
CCACATGCCCCTGCTGGCCAACTCCAGTTTTGCCCAGTTTTCACAGGAGA
TTGGCCTTGCATCTTTGGGTGCAAGCGACGCGGATATCGAGAAGTTGGCT
ACGCTCTACTTCTTTACTGTGGAATTTGGGCTGTGCAAACAGGCGGACAG
CACATTTAAGGTGTATGGAGCCGGACTTCTGAGCTCAGTGGCCGAGTTGC
AGCATGCCATTACGGCGGAGAATAAGATAAAGAAGTTCGACCCGGAGGTG
ACGTGCCAGCAGGAGTGCATCATCACCTCCTACCAGAATGCCTACTACTA
CACCGATTCCTTCGAGGAGGCCAAGGAGCAAATGAGAGCTTTTGCCGAGA
GCATCCAACGGCCATTTGGAGTGCGCTACAACCCGTACACGATGAGTGTT
GAAGTCCTGTCGAATGCCAAGAAGATCACAGCGGTGGTCAGCGAACTCAG
AGGCGATCTCAGCATTGTCTGCTCGGCACTGCGAAAGATCTCCGCCACGG
ACGAGAATCTGGATGTGGATAGCATCGCTAACATGCTCCACAACAGCCTG
AATGTGAGAGGTGGAGCTTCTGGCGGAGGCGGAAGTCCGTGCAGTCCGGA
CAACTCGGATAACTCTACGGCGGAGGGAGATGCAAGCTTTCTAGACCAT
BO07959.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:45:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trh-RA | 1668 | CG9122-PA | 1..1665 | 17..1681 | 8325 | 100 | Plus |
ple-RC | 1740 | CG10118-PC | 1225..1376 | 1037..1188 | 265 | 78.3 | Plus |
ple-RB | 1740 | CG10118-PB | 1225..1376 | 1037..1188 | 265 | 78.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:45:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trh-RA | 2183 | CG9122-RA | 84..1748 | 17..1681 | 8325 | 100 | Plus |
ple-RC | 3806 | CG10118-RC | 1677..1828 | 1037..1188 | 265 | 78.3 | Plus |
ple-RB | 3124 | CG10118-RB | 1677..1828 | 1037..1188 | 265 | 78.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:45:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1192580..1193090 | 527..17 | 2555 | 100 | Minus |
3L | 28110227 | 3L | 1190819..1191115 | 1681..1385 | 1485 | 100 | Minus |
3L | 28110227 | 3L | 1191824..1192107 | 1027..744 | 1420 | 100 | Minus |
3L | 28110227 | 3L | 1191173..1191406 | 1386..1153 | 1170 | 100 | Minus |
3L | 28110227 | 3L | 1192308..1192478 | 693..523 | 840 | 99.4 | Minus |
3L | 28110227 | 3L | 1191465..1191591 | 1153..1027 | 635 | 100 | Minus |
3L | 28110227 | 3L | 1192183..1192234 | 745..694 | 260 | 100 | Minus |
3L | 28110227 | 3L | 6715717..6715824 | 1144..1037 | 240 | 81.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:45:35 has no hits.
BO07959.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:38 Download gff for
BO07959.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trh-RA | 1..1668 | 17..1682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:15 Download gff for
BO07959.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trh-RA | 75..1744 | 9..1681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:02 Download gff for
BO07959.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trh-RA | 84..1748 | 17..1683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:38 Download gff for
BO07959.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trh-RA | 75..1744 | 9..1681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:26 Download gff for
BO07959.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trh-RA | 84..1748 | 17..1683 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:26 Download gff for
BO07959.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1190817..1191113 | 1387..1683 | 99 | <- | Minus |
3L | 1191173..1191405 | 1154..1386 | 100 | <- | Minus |
3L | 1191465..1191591 | 1027..1153 | 100 | <- | Minus |
3L | 1191825..1192106 | 745..1026 | 100 | <- | Minus |
3L | 1192184..1192234 | 694..744 | 100 | <- | Minus |
3L | 1192308..1192473 | 528..693 | 100 | <- | Minus |
3L | 1192580..1193090 | 17..527 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:02 Download gff for
BO07959.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1190817..1191113 | 1387..1683 | 99 | <- | Minus |
arm_3L | 1191173..1191405 | 1154..1386 | 100 | <- | Minus |
arm_3L | 1191465..1191591 | 1027..1153 | 100 | <- | Minus |
arm_3L | 1191825..1192106 | 745..1026 | 100 | <- | Minus |
arm_3L | 1192184..1192234 | 694..744 | 100 | <- | Minus |
arm_3L | 1192308..1192473 | 528..693 | 100 | <- | Minus |
arm_3L | 1192580..1193090 | 17..527 | 100 | | Minus |
BO07959.pep Sequence
Translation from 16 to 1699
> BO07959.pep
MSASGKSLLGLWLYRSGEQEWAVKQGSPLHQLKKDSTTSGSSSHPSLGRN
ASAPPEPPRLAIGGGGQDNGRQHSPGERISIIFTLRNQVGNLARALQVFQ
ELGINVLHLELSPLEMATNQADVLVDVECDQRRLDQVVKMLNREVASVNY
TSVNTQGLARAPSLSACSSFDFGDMVWFPRKISDLDKAQNVLMYGSELDA
DHPGFKDPVYRKRREQFSAIANNFKHGNPIPRVQYTPEEVKTWGTVFLEL
HRLYVLHAVPEYMDNWPELEKYCGYREDNVPQLQDVSVYLKRKTGFQLRP
VAGYLSPRDFLSGLAFRVFHCTQYIRHSSDPFYTPEPDCCHELLGHMPLL
ANSSFAQFSQEIGLASLGASDADIEKLATLYFFTVEFGLCKQADSTFKVY
GAGLLSSVAELQHAITAENKIKKFDPEVTCQQECIITSYQNAYYYTDSFE
EAKEQMRAFAESIQRPFGVRYNPYTMSVEVLSNAKKITAVVSELRGDLSI
VCSALRKISATDENLDVDSIANMLHNSLNVRGGASGGGGSPCSPDNSDNS
TAEGDASFLDH
BO07959.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:37:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trh-PA | 555 | CG9122-PA | 1..555 | 1..555 | 2905 | 100 | Plus |
Hn-PB | 447 | CG7399-PB | 41..445 | 90..508 | 1047 | 50.5 | Plus |
Hn-PC | 452 | CG7399-PC | 46..450 | 90..508 | 1047 | 50.5 | Plus |
Hn-PA | 452 | CG7399-PA | 46..450 | 90..508 | 1047 | 50.5 | Plus |
ple-PA | 508 | CG10118-PA | 89..504 | 80..508 | 869 | 42.1 | Plus |