Clone BO07959 Report

Search the DGRC for BO07959

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:79
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptTrh-RA
Protein status:BO07959.pep: validated full length
Sequenced Size:1699

Clone Sequence Records

BO07959.3prime Sequence

935 bp (735 high quality bases) assembled on 2006-01-06

> BO07959.3prime
ATGGTCTAGAAAGCTTGCATCTCCCTCCGCCGTAGAGTTATCCGAGTTGT
CCGGACTGCACGGACTTCCGCCTCCGCCAGAAGCTCCACCTCTCACATTC
AGGCTGTTGTGGAGCATGTTAGCGATGCTATCCACATCCAGATTCTCGTC
CGTGGCGGAGATCTTTCGCAGTGCCGAGCAGACAATGCTGAGATCGCCTC
TGAGTTCGCTGACCACCGCTGTGATCTTCTTGGCATTCGACAGGACTTCA
ACACTCATCGTGTACGGGTTGTAGCGCACTCCAAATGGCCGTTGGATGCT
CTCGGCAAAAGCTCTCATTTGCTCCTTGGCCTCCTCGAAGGAATCGGTGT
AGTAGTAGGCATTCTGGTAGGAGGTGATGATGCACTCCTGCTGGCACGTC
ACCTCCGGGTCGAACTTCTTTATCTTATTCTCCGCCGTAATGGCATGCTG
CAACTCGGCCACTGAGCTCAGAAGTCCGGCTCCATACACCTTAAATGTGC
TGTCCGCCTGTTTGCACAGCCCAAATTCCACAGTAAAGAAGTAGAGCGTA
GCCAACTTCTCGATATCCGCGTCGCTTGCACCCAAAGATGCAAGGCCAAT
CTCCTGTGAAAACTGGGCAAAACTGGAGTTGGCCAGCAGGGGCATGTGGC
CCAGTAGCTCGTGGCAACAGTCCGGTTCTGGTGTGTAGAATGGATCCGAG
GAGTGTCGAATGTACTGGGTGCAGTGGAACACGCGGAAGGCGAGTCCCGA
AAGGAAGTCCCTTGGGGAGAGGTAACCCGCCACAGGCCTGAGCTGGAATC
CCGTCTTGCGCTTGAGATAGACACTCACATCCTGCAACTGGGGAACGTTG
TCCTCGCGGTAGCCACAGTACTTCTCCAGCTCCCGGCAGTTGTCCATGTA
CTCAGGCACAGCATGCAACACGTAGAGGCGGTGGA

BO07959.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG9122-PA 1668 Trh-RA 749..1665 935..19 4535 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
Trh-RA 2183 CG9122-RA 832..1748 935..19 4555 99.8 Minus
ple-RC 3806 CG10118-RC 1677..1828 663..512 265 78.3 Minus
ple-RB 3124 CG10118-RB 1677..1828 663..512 265 78.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1190819..1191115 19..315 1485 100 Plus
3L 28110227 3L 1191824..1192086 673..935 1285 99.2 Plus
3L 28110227 3L 1191173..1191406 314..547 1170 100 Plus
3L 28110227 3L 1191465..1191591 547..673 635 100 Plus
3L 28110227 3L 6715717..6715824 556..663 240 81.5 Plus
Blast to na_te.dros performed on 2015-02-13 16:32:33 has no hits.

BO07959.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:33:49 Download gff for BO07959.3prime
Subject Subject Range Query Range Percent Splice Strand
Trh-PA 750..1668 18..934 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:22:25 Download gff for BO07959.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9122-PA 750..1668 18..934 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:13:24 Download gff for BO07959.3prime
Subject Subject Range Query Range Percent Splice Strand
Trh-RA 833..1748 19..934 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 19:15:11 Download gff for BO07959.3prime
Subject Subject Range Query Range Percent Splice Strand
Trh-RA 833..1748 19..934 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:15:11 Download gff for BO07959.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1190819..1191113 19..313 100 <- Plus
3L 1191173..1191405 314..546 100 <- Plus
3L 1191465..1191591 547..673 100 <- Plus
3L 1191825..1192085 674..934 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:13:24 Download gff for BO07959.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1190819..1191113 19..313 100 <- Plus
arm_3L 1191173..1191405 314..546 100 <- Plus
arm_3L 1191465..1191591 547..673 100 <- Plus
arm_3L 1191825..1192085 674..934 99   Plus

BO07959.5prime Sequence

880 bp (727 high quality bases) assembled on 2006-01-06

> BO07959.5prime
GAAGTTATCAGTCGACATGAGTGCTTCCGGGAAGAGTCTTCTGGGCCTGT
GGCTCTACAGGAGTGGCGAACAGGAGTGGGCCGTCAAGCAGGGAAGTCCC
TTGCACCAGCTTAAAAAGGATTCCACCACATCCGGCTCCAGCTCGCATCC
AAGTCTCGGCAGAAACGCCTCCGCTCCGCCGGAGCCGCCAAGGCTGGCCA
TCGGTGGTGGTGGTCAGGATAATGGAAGACAGCATTCCCCTGGCGAACGC
ATCTCCATCATTTTCACCCTGCGTAACCAGGTGGGAAACCTGGCCAGAGC
CCTCCAGGTTTTCCAGGAGCTGGGCATCAATGTGCTGCATTTGGAGCTAT
CGCCGCTTGAGATGGCCACCAACCAGGCGGATGTCCTCGTGGATGTGGAG
TGCGATCAGCGTCGACTCGACCAGGTGGTCAAGATGCTCAACCGAGAGGT
GGCCTCTGTGAACTACACTTCCGTGAACACGCAGGGATTGGCCAGGGCTC
CGTCGCTATCGGCGTGCTCCAGTTTTGACTTCGGCGATATGGTGTGGTTT
CCGCGAAAGATTTCCGATTTGGACAAGGCGCAGAATGTGCTCATGTACGG
CTCGGAGTTGGATGCCGACCATCCAGGATTCAAGGACCCCGTGTACCGTA
AACGGCGAGAGCAGTTCTCGGCCATTGCCAACAACTTCAAGCATGGCAAC
CCCATTCCACGTGTGCAATACACACCTGAGGAGGTGAAAACCTGGGGCAC
CGTTTTCTTGGAGCTCCACCGCCTCTACGTGTTGCATGCTGTGCCTGAGT
ACATGGACAACTGGCCGGAGCTGGAGAAGTACTGTGGCTACCGCGAGGAA
CACGTTCCCCAGTTGCAGGATGTGAGTGTC

BO07959.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9122-PA 1668 Trh-RA 1..864 17..880 4270 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:01:26
Subject Length Description Subject Range Query Range Score Percent Strand
Trh-RA 2183 CG9122-RA 84..947 17..880 4290 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:01:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1192580..1193090 527..17 2555 100 Minus
3L 28110227 3L 1192308..1192478 693..523 840 99.4 Minus
3L 28110227 3L 1191971..1192107 880..744 655 98.5 Minus
3L 28110227 3L 1192183..1192234 745..694 260 100 Minus
Blast to na_te.dros performed on 2015-02-11 03:01:24 has no hits.

BO07959.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:33:49 Download gff for BO07959.5prime
Subject Subject Range Query Range Percent Splice Strand
Trh-PA 1..864 17..880 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:22:27 Download gff for BO07959.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9122-PA 1..864 17..880 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:24:00 Download gff for BO07959.5prime
Subject Subject Range Query Range Percent Splice Strand
Trh-RA 79..947 9..880 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:25:29 Download gff for BO07959.5prime
Subject Subject Range Query Range Percent Splice Strand
Trh-RA 79..947 9..880 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:25:29 Download gff for BO07959.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1191971..1192106 745..880 98 <- Minus
3L 1192184..1192234 694..744 100 <- Minus
3L 1192308..1192473 528..693 100 <- Minus
3L 1192580..1193095 9..527 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:24:00 Download gff for BO07959.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1191971..1192106 745..880 98 <- Minus
arm_3L 1192184..1192234 694..744 100 <- Minus
arm_3L 1192308..1192473 528..693 100 <- Minus
arm_3L 1192580..1193095 9..527 99   Minus

BO07959.complete Sequence

1699 bp (1699 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ630998

> BO07959.complete
GAAGTTATCAGTCGACATGAGTGCTTCCGGGAAGAGTCTTCTGGGCCTGT
GGCTCTACAGGAGTGGCGAACAGGAGTGGGCCGTCAAGCAGGGAAGTCCC
TTGCACCAGCTTAAAAAGGATTCCACCACATCCGGCTCCAGCTCGCATCC
AAGTCTCGGCAGAAACGCCTCCGCTCCGCCGGAGCCGCCAAGGCTGGCCA
TCGGTGGTGGTGGTCAGGATAATGGAAGACAGCATTCCCCTGGCGAACGC
ATCTCCATCATTTTCACCCTGCGTAACCAGGTGGGAAACCTGGCCAGAGC
CCTCCAGGTTTTCCAGGAGCTGGGCATCAATGTGCTGCATTTGGAGCTAT
CGCCGCTTGAGATGGCCACCAACCAGGCGGATGTCCTCGTGGATGTGGAG
TGCGATCAGCGTCGACTCGACCAGGTGGTCAAGATGCTCAACCGAGAGGT
GGCCTCTGTGAACTACACTTCCGTGAACACGCAGGGATTGGCCAGGGCTC
CGTCGCTATCGGCGTGCTCCAGTTTTGACTTCGGCGATATGGTGTGGTTT
CCGCGAAAGATTTCCGATTTGGACAAGGCGCAGAATGTGCTCATGTACGG
CTCGGAGTTGGATGCCGACCATCCAGGATTCAAGGACCCCGTGTACCGTA
AACGGCGAGAGCAGTTCTCGGCCATTGCCAACAACTTCAAGCATGGCAAC
CCCATTCCACGTGTGCAATACACACCTGAGGAGGTGAAAACCTGGGGCAC
CGTTTTCTTGGAGCTCCACCGCCTCTACGTGTTGCATGCTGTGCCTGAGT
ACATGGACAACTGGCCGGAGCTGGAGAAGTACTGTGGCTACCGCGAGGAC
AACGTTCCCCAGTTGCAGGATGTGAGTGTCTATCTCAAGCGCAAGACGGG
ATTCCAGCTCAGGCCTGTGGCGGGTTACCTCTCCCCAAGGGACTTCCTTT
CGGGACTCGCCTTCCGCGTGTTCCACTGCACCCAGTACATTCGACACTCC
TCGGATCCATTCTACACACCAGAACCGGACTGTTGCCACGAGCTACTGGG
CCACATGCCCCTGCTGGCCAACTCCAGTTTTGCCCAGTTTTCACAGGAGA
TTGGCCTTGCATCTTTGGGTGCAAGCGACGCGGATATCGAGAAGTTGGCT
ACGCTCTACTTCTTTACTGTGGAATTTGGGCTGTGCAAACAGGCGGACAG
CACATTTAAGGTGTATGGAGCCGGACTTCTGAGCTCAGTGGCCGAGTTGC
AGCATGCCATTACGGCGGAGAATAAGATAAAGAAGTTCGACCCGGAGGTG
ACGTGCCAGCAGGAGTGCATCATCACCTCCTACCAGAATGCCTACTACTA
CACCGATTCCTTCGAGGAGGCCAAGGAGCAAATGAGAGCTTTTGCCGAGA
GCATCCAACGGCCATTTGGAGTGCGCTACAACCCGTACACGATGAGTGTT
GAAGTCCTGTCGAATGCCAAGAAGATCACAGCGGTGGTCAGCGAACTCAG
AGGCGATCTCAGCATTGTCTGCTCGGCACTGCGAAAGATCTCCGCCACGG
ACGAGAATCTGGATGTGGATAGCATCGCTAACATGCTCCACAACAGCCTG
AATGTGAGAGGTGGAGCTTCTGGCGGAGGCGGAAGTCCGTGCAGTCCGGA
CAACTCGGATAACTCTACGGCGGAGGGAGATGCAAGCTTTCTAGACCAT

BO07959.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:45:36
Subject Length Description Subject Range Query Range Score Percent Strand
Trh-RA 1668 CG9122-PA 1..1665 17..1681 8325 100 Plus
ple-RC 1740 CG10118-PC 1225..1376 1037..1188 265 78.3 Plus
ple-RB 1740 CG10118-PB 1225..1376 1037..1188 265 78.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:45:37
Subject Length Description Subject Range Query Range Score Percent Strand
Trh-RA 2183 CG9122-RA 84..1748 17..1681 8325 100 Plus
ple-RC 3806 CG10118-RC 1677..1828 1037..1188 265 78.3 Plus
ple-RB 3124 CG10118-RB 1677..1828 1037..1188 265 78.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1192580..1193090 527..17 2555 100 Minus
3L 28110227 3L 1190819..1191115 1681..1385 1485 100 Minus
3L 28110227 3L 1191824..1192107 1027..744 1420 100 Minus
3L 28110227 3L 1191173..1191406 1386..1153 1170 100 Minus
3L 28110227 3L 1192308..1192478 693..523 840 99.4 Minus
3L 28110227 3L 1191465..1191591 1153..1027 635 100 Minus
3L 28110227 3L 1192183..1192234 745..694 260 100 Minus
3L 28110227 3L 6715717..6715824 1144..1037 240 81.5 Minus
Blast to na_te.dros performed on 2014-11-28 00:45:35 has no hits.

BO07959.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:38 Download gff for BO07959.complete
Subject Subject Range Query Range Percent Splice Strand
Trh-RA 1..1668 17..1682 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:15 Download gff for BO07959.complete
Subject Subject Range Query Range Percent Splice Strand
Trh-RA 75..1744 9..1681 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:02 Download gff for BO07959.complete
Subject Subject Range Query Range Percent Splice Strand
Trh-RA 84..1748 17..1683 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:38 Download gff for BO07959.complete
Subject Subject Range Query Range Percent Splice Strand
Trh-RA 75..1744 9..1681 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:26 Download gff for BO07959.complete
Subject Subject Range Query Range Percent Splice Strand
Trh-RA 84..1748 17..1683 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:26 Download gff for BO07959.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1190817..1191113 1387..1683 99 <- Minus
3L 1191173..1191405 1154..1386 100 <- Minus
3L 1191465..1191591 1027..1153 100 <- Minus
3L 1191825..1192106 745..1026 100 <- Minus
3L 1192184..1192234 694..744 100 <- Minus
3L 1192308..1192473 528..693 100 <- Minus
3L 1192580..1193090 17..527 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:02 Download gff for BO07959.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1190817..1191113 1387..1683 99 <- Minus
arm_3L 1191173..1191405 1154..1386 100 <- Minus
arm_3L 1191465..1191591 1027..1153 100 <- Minus
arm_3L 1191825..1192106 745..1026 100 <- Minus
arm_3L 1192184..1192234 694..744 100 <- Minus
arm_3L 1192308..1192473 528..693 100 <- Minus
arm_3L 1192580..1193090 17..527 100   Minus

BO07959.pep Sequence

Translation from 16 to 1699

> BO07959.pep
MSASGKSLLGLWLYRSGEQEWAVKQGSPLHQLKKDSTTSGSSSHPSLGRN
ASAPPEPPRLAIGGGGQDNGRQHSPGERISIIFTLRNQVGNLARALQVFQ
ELGINVLHLELSPLEMATNQADVLVDVECDQRRLDQVVKMLNREVASVNY
TSVNTQGLARAPSLSACSSFDFGDMVWFPRKISDLDKAQNVLMYGSELDA
DHPGFKDPVYRKRREQFSAIANNFKHGNPIPRVQYTPEEVKTWGTVFLEL
HRLYVLHAVPEYMDNWPELEKYCGYREDNVPQLQDVSVYLKRKTGFQLRP
VAGYLSPRDFLSGLAFRVFHCTQYIRHSSDPFYTPEPDCCHELLGHMPLL
ANSSFAQFSQEIGLASLGASDADIEKLATLYFFTVEFGLCKQADSTFKVY
GAGLLSSVAELQHAITAENKIKKFDPEVTCQQECIITSYQNAYYYTDSFE
EAKEQMRAFAESIQRPFGVRYNPYTMSVEVLSNAKKITAVVSELRGDLSI
VCSALRKISATDENLDVDSIANMLHNSLNVRGGASGGGGSPCSPDNSDNS
TAEGDASFLDH

BO07959.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
Trh-PA 555 CG9122-PA 1..555 1..555 2905 100 Plus
Hn-PB 447 CG7399-PB 41..445 90..508 1047 50.5 Plus
Hn-PC 452 CG7399-PC 46..450 90..508 1047 50.5 Plus
Hn-PA 452 CG7399-PA 46..450 90..508 1047 50.5 Plus
ple-PA 508 CG10118-PA 89..504 80..508 869 42.1 Plus