Clone BO07962 Report

Search the DGRC for BO07962

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:79
Well:62
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO07962.pep: validated not full length
Sequenced Size:940

Clone Sequence Records

BO07962.3prime Sequence

942 bp (803 high quality bases) assembled on 2006-01-06

> BO07962.3prime
ATGGTCTAGAAAGCTTGCGTTGGATAGCTGCTGCTCTGCCTCCGCGGGCA
CCACGTGCTCATGGTCCTCCTTGGGCATGCTGCGCTGCTCCTCCACCCTC
AGCTCCGCCTTCTTGGCTTGCTCCTGGCGCCGGGCCACGCCCTCCATCGA
CTCTCTCAGCGAATCGATGTCCAGCGCATTCTCGTCTTTGTCTCCACCCT
GCTCGTGCCTCTGACCGCCAGCGTACTTGGAGAAATAGGTGAGCGACTTC
ATCAGCTGATAGCTCTTTGAGATGGGAATGTTGGAGTCGTAGACGCTCGT
GCTAGAGCTGCAGTCGACGTAGAACCACCAGTTGCACTTTAAGATCGTCT
GGTCGAAGAGTGTGTTCTCCGGGCAAAGGAACGACTTCCGCACCATGCCG
TCATCGGTTAGGGCGCATACGTGGAATACCATGCAGCCAAGGTCGGTGTC
AGCGTAGAGACCGGGGAAGTGCTTTTGCTTAGCGCAGGAGAAGCTTGTAG
GTGGCAGGTCCACCTTGGATTTGAAGTTGTCGTCAAAGTTCTTATCGTAG
CCCACTGGATAGTACTCTTTAGGGGCATTCATTACCTTGGACACCTTGTG
CTCCGCCAGCGACTTTTGTGGGCGCGGTGTAGTGGTTGTCGTTGTGGTCG
TCGTGGTCGTAGTCCTCACAGTGGAGGTGCGCATAAACTCTTCCCTTAGC
TTGGCCGCCAGTTGGGCCCGGTGTTCGGCCTTTAGCTGCTGCTCCCGGAC
GTAAATGGCGTGCTTGATAGTGTCCACTGTTACGTTAGCAGCGGCGGCCA
GCTCTTCAACGGTAACATCCTTTAGGTCGAACTTGGGCTCCTCGAACTGA
AGGTAATTCGGGTGACTGGACACCGTTCGGTGCTCCTTACCGACATTGGC
GATCCTGCCGATGGATTGGGGCATGTCGACTGATAACTTCGT

BO07962.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7549-PC 1692 CG7549-RC 784..1689 924..19 4505 99.8 Minus
CG7549-PA 1563 CG7549-RA 655..1560 924..19 4505 99.8 Minus
CG7549-PB 909 CG7549-RB 1..906 924..19 4505 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
mtg-RF 2276 CG7549-RF 837..1742 924..19 4515 99.9 Minus
mtg-RE 2399 CG7549-RE 960..1865 924..19 4515 99.9 Minus
mtg-RH 2233 CG7549-RH 794..1699 924..19 4515 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8259773..8260184 430..19 2060 100 Minus
3R 32079331 3R 8259119..8259459 924..584 1690 99.7 Minus
3R 32079331 3R 8259545..8259705 587..427 805 100 Minus
Blast to na_te.dros performed on 2015-02-04 20:34:08 has no hits.

BO07962.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:33:52 Download gff for BO07962.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7549-PB 1..909 18..924 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:22:31 Download gff for BO07962.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7549-PB 1..909 18..924 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:27:00 Download gff for BO07962.3prime
Subject Subject Range Query Range Percent Splice Strand
mtg-RE 955..1877 6..931 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:51:32 Download gff for BO07962.3prime
Subject Subject Range Query Range Percent Splice Strand
mtg-RH 790..1712 6..931 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:51:32 Download gff for BO07962.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8259115..8259457 586..931 98 -> Minus
3R 8259547..8259702 430..585 100 -> Minus
3R 8259774..8260197 6..429 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:27:00 Download gff for BO07962.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4084837..4085179 586..931 98 -> Minus
arm_3R 4085269..4085424 430..585 100 -> Minus
arm_3R 4085496..4085919 6..429 98   Minus

BO07962.5prime Sequence

928 bp (794 high quality bases) assembled on 2006-01-06

> BO07962.5prime
GAAGTTATCAGTCGACATGCCCCAATCCATCGCCAGGATCGCCAATGTCG
GTAAGGAGCACCGAACGGTGTCCAGTCACCCGAATTACCTTCAGTTCGAG
GAGCCCAAGTTCGACCTAAAGGATGTTACCGTTGAAGAGCTGGCCGCCGC
TGCTAACGTAACAGTGGACACTATCAAGCACGCCATTTACGTCCGGGAGC
AGCAGCTAAAGGCCGAACACCGGGCCCAACTGGCGGCCAAGCTAAGGGAA
GAGTTTATGCGCACCTCCACTGTGAGGACTACGACCACGACGACCACAAC
GACAACCACTACACCGCGCCCACAAAAGTCGCTGGCGGAGCACAAGGTGT
CCAAGGTAATGAATGCCCCTAAAGAGTACTATCCAGTGGGCTACGATAAG
AACTTTGACGACAACTTCAAATCCAAGGTGGACCTGCCACCTACAAGCTT
CTCCTGCGCTAAGCAAAAGCACTTCCCCGGTCTCTACGCTGACACCGACC
TTGGCTGCATGGTATTCCACGTATGCGCCCTAACCGATGACGGCATGGTG
CGGAAGTCGTTCCTTTGCCCGGAGAACACACTCTTCGACCAGACGATCTT
AAAGTGCAACTGGTGGTTCTACGTCGACTGCAGCTCTAGCACGAGCGTCT
ACGACTCCAACATTCCCATCTCAAAGAGCTATCAGCTGATGAAGTCGCTC
ACCTATTTCTCCAAGTACGCTGGCGGTCAGAGGCACGAGCAGGGTGGAGA
CAAAGACGAGAATGCGCTGGACATCGATTCGCTGAGAGAGTCGATGGAGG
GCGTGGCCCGGCGCCAGGAGCAAGCCAAGAAAGCGGAGCTGAGGGTGGAG
GAGCAGCGCAGCATGCCCAAGGAGGACCATGAGCACGTGGTGCCCGCGGA
GGCAGAGCAGCAGCTATCCNACGCAAGC

BO07962.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG7549-PC 1692 CG7549-RC 784..1686 17..919 4490 99.8 Plus
CG7549-PA 1563 CG7549-RA 655..1557 17..919 4490 99.8 Plus
CG7549-PB 909 CG7549-RB 1..903 17..919 4490 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
mtg-RF 2276 CG7549-RF 837..1739 17..919 4500 99.9 Plus
mtg-RE 2399 CG7549-RE 960..1862 17..919 4500 99.9 Plus
mtg-RH 2233 CG7549-RH 794..1696 17..919 4500 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8259773..8260181 511..919 2030 99.8 Plus
3R 32079331 3R 8259119..8259459 17..357 1705 100 Plus
3R 32079331 3R 8259545..8259705 354..514 805 100 Plus
Blast to na_te.dros performed on 2015-02-04 20:34:13 has no hits.

BO07962.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:33:53 Download gff for BO07962.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7549-PB 1..909 17..923 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:22:32 Download gff for BO07962.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7549-PB 1..909 17..923 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:27:02 Download gff for BO07962.5prime
Subject Subject Range Query Range Percent Splice Strand
mtg-RE 955..1869 10..928 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:51:34 Download gff for BO07962.5prime
Subject Subject Range Query Range Percent Splice Strand
mtg-RH 790..1704 10..928 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:51:34 Download gff for BO07962.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8259115..8259457 10..355 99 -> Plus
3R 8259547..8259702 356..511 100 -> Plus
3R 8259774..8260189 512..928 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:27:02 Download gff for BO07962.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4084837..4085179 10..355 99 -> Plus
arm_3R 4085269..4085424 356..511 100 -> Plus
arm_3R 4085496..4085911 512..928 98   Plus

BO07962.complete Sequence

940 bp (940 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630999

> BO07962.complete
GAAGTTATCAGTCGACATGCCCCAATCCATCGCCAGGATCGCCAATGTCG
GTAAGGAGCACCGAACGGTGTCCAGTCACCCGAATTACCTTCAGTTCGAG
GAGCCCAAGTTCGACCTAAAGGATGTTACCGTTGAAGAGCTGGCCGCCGC
TGCTAACGTAACAGTGGACACTATCAAGCACGCCATTTACGTCCGGGAGC
AGCAGCTAAAGGCCGAACACCGGGCCCAACTGGCGGCCAAGCTAAGGGAA
GAGTTTATGCGCACCTCCACTGTGAGGACTACGACCACGACGACCACAAC
GACAACCACTACACCGCGCCCACAAAAGTCGCTGGCGGAGCACAAGGTGT
CCAAGGTAATGAATGCCCCTAAAGAGTACTATCCAGTGGGCTACGATAAG
AACTTTGACGACAACTTCAAATCCAAGGTGGACCTGCCACCTACAAGCTT
CTCCTGCGCTAAGCAAAAGCACTTCCCCGGTCTCTACGCTGACACCGACC
TTGGCTGCATGGTATTCCACGTATGCGCCCTAACCGATGACGGCATGGTG
CGGAAGTCGTTCCTTTGCCCGGAGAACACACTCTTCGACCAGACGATCTT
AAAGTGCAACTGGTGGTTCTACGTCGACTGCAGCTCTAGCACGAGCGTCT
ACGACTCCAACATTCCCATCTCAAAGAGCTATCAGCTGATGAAGTCGCTC
ACCTATTTCTCCAAGTACGCTGGCGGTCAGAGGCACGAGCAGGGTGGAGA
CAAAGACGAGAATGCGCTGGACATCGATTCGCTGAGAGAGTCGATGGAGG
GCGTGGCCCGGCGCCAGGAGCAAGCCAAGAAGGCGGAGCTGAGGGTGGAG
GAGCAGCGCAGCATGCCCAAGGAGGACCATGAGCACGTGGTGCCCGCGGA
GGCAGAGCAGCAGCTATCCAACGCAAGCTTTCTAGACCAT

BO07962.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
mtg-RF 1548 CG7549-PF 640..1545 17..922 4530 100 Plus
mtg-RE 1671 CG7549-PE 763..1668 17..922 4530 100 Plus
mtg-RH 1164 CG7549-PH 256..1161 17..922 4530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
mtg-RF 2276 CG7549-RF 837..1742 17..922 4530 100 Plus
mtg-RE 2399 CG7549-RE 960..1865 17..922 4530 100 Plus
mtg-RH 2233 CG7549-RH 794..1699 17..922 4530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8259773..8260184 511..922 2060 100 Plus
3R 32079331 3R 8259119..8259459 17..357 1705 100 Plus
3R 32079331 3R 8259545..8259705 354..514 805 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:39:18 has no hits.

BO07962.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:58 Download gff for BO07962.complete
Subject Subject Range Query Range Percent Splice Strand
CG7549-RB 1..909 17..923 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:19 Download gff for BO07962.complete
Subject Subject Range Query Range Percent Splice Strand
CG7549-RB 25..947 10..935 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:37 Download gff for BO07962.complete
Subject Subject Range Query Range Percent Splice Strand
mtg-RE 959..1864 17..924 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:59 Download gff for BO07962.complete
Subject Subject Range Query Range Percent Splice Strand
CG7549-RB 25..947 10..935 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:30 Download gff for BO07962.complete
Subject Subject Range Query Range Percent Splice Strand
mtg-RH 794..1699 17..924 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:30 Download gff for BO07962.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8259119..8259457 17..355 100 -> Plus
3R 8259547..8259702 356..511 100 -> Plus
3R 8259774..8260184 512..924 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:37 Download gff for BO07962.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4084841..4085179 17..355 100 -> Plus
arm_3R 4085269..4085424 356..511 100 -> Plus
arm_3R 4085496..4085906 512..924 99   Plus

BO07962.pep Sequence

Translation from 16 to 940

> BO07962.pep
MPQSIARIANVGKEHRTVSSHPNYLQFEEPKFDLKDVTVEELAAAANVTV
DTIKHAIYVREQQLKAEHRAQLAAKLREEFMRTSTVRTTTTTTTTTTTTP
RPQKSLAEHKVSKVMNAPKEYYPVGYDKNFDDNFKSKVDLPPTSFSCAKQ
KHFPGLYADTDLGCMVFHVCALTDDGMVRKSFLCPENTLFDQTILKCNWW
FYVDCSSSTSVYDSNIPISKSYQLMKSLTYFSKYAGGQRHEQGGDKDENA
LDIDSLRESMEGVARRQEQAKKAELRVEEQRSMPKEDHEHVVPAEAEQQL
SNASFLDH

BO07962.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
mtg-PH 387 CG7549-PH 86..387 1..302 1583 100 Plus
mtg-PG 387 CG7549-PG 86..387 1..302 1583 100 Plus
mtg-PF 515 CG7549-PF 214..515 1..302 1583 100 Plus
mtg-PE 556 CG7549-PE 255..556 1..302 1583 100 Plus
CG32036-PC 173 CG32036-PC 26..160 110..235 178 29.6 Plus