Clone Sequence Records
BO07962.3prime Sequence
942 bp (803 high quality bases) assembled on 2006-01-06
> BO07962.3prime
ATGGTCTAGAAAGCTTGCGTTGGATAGCTGCTGCTCTGCCTCCGCGGGCA
CCACGTGCTCATGGTCCTCCTTGGGCATGCTGCGCTGCTCCTCCACCCTC
AGCTCCGCCTTCTTGGCTTGCTCCTGGCGCCGGGCCACGCCCTCCATCGA
CTCTCTCAGCGAATCGATGTCCAGCGCATTCTCGTCTTTGTCTCCACCCT
GCTCGTGCCTCTGACCGCCAGCGTACTTGGAGAAATAGGTGAGCGACTTC
ATCAGCTGATAGCTCTTTGAGATGGGAATGTTGGAGTCGTAGACGCTCGT
GCTAGAGCTGCAGTCGACGTAGAACCACCAGTTGCACTTTAAGATCGTCT
GGTCGAAGAGTGTGTTCTCCGGGCAAAGGAACGACTTCCGCACCATGCCG
TCATCGGTTAGGGCGCATACGTGGAATACCATGCAGCCAAGGTCGGTGTC
AGCGTAGAGACCGGGGAAGTGCTTTTGCTTAGCGCAGGAGAAGCTTGTAG
GTGGCAGGTCCACCTTGGATTTGAAGTTGTCGTCAAAGTTCTTATCGTAG
CCCACTGGATAGTACTCTTTAGGGGCATTCATTACCTTGGACACCTTGTG
CTCCGCCAGCGACTTTTGTGGGCGCGGTGTAGTGGTTGTCGTTGTGGTCG
TCGTGGTCGTAGTCCTCACAGTGGAGGTGCGCATAAACTCTTCCCTTAGC
TTGGCCGCCAGTTGGGCCCGGTGTTCGGCCTTTAGCTGCTGCTCCCGGAC
GTAAATGGCGTGCTTGATAGTGTCCACTGTTACGTTAGCAGCGGCGGCCA
GCTCTTCAACGGTAACATCCTTTAGGTCGAACTTGGGCTCCTCGAACTGA
AGGTAATTCGGGTGACTGGACACCGTTCGGTGCTCCTTACCGACATTGGC
GATCCTGCCGATGGATTGGGGCATGTCGACTGATAACTTCGT
BO07962.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7549-PC | 1692 | CG7549-RC | 784..1689 | 924..19 | 4505 | 99.8 | Minus |
CG7549-PA | 1563 | CG7549-RA | 655..1560 | 924..19 | 4505 | 99.8 | Minus |
CG7549-PB | 909 | CG7549-RB | 1..906 | 924..19 | 4505 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:34:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtg-RF | 2276 | CG7549-RF | 837..1742 | 924..19 | 4515 | 99.9 | Minus |
mtg-RE | 2399 | CG7549-RE | 960..1865 | 924..19 | 4515 | 99.9 | Minus |
mtg-RH | 2233 | CG7549-RH | 794..1699 | 924..19 | 4515 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:34:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8259773..8260184 | 430..19 | 2060 | 100 | Minus |
3R | 32079331 | 3R | 8259119..8259459 | 924..584 | 1690 | 99.7 | Minus |
3R | 32079331 | 3R | 8259545..8259705 | 587..427 | 805 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 20:34:08 has no hits.
BO07962.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:33:52 Download gff for
BO07962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7549-PB | 1..909 | 18..924 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:22:31 Download gff for
BO07962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7549-PB | 1..909 | 18..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:27:00 Download gff for
BO07962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtg-RE | 955..1877 | 6..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:51:32 Download gff for
BO07962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtg-RH | 790..1712 | 6..931 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:51:32 Download gff for
BO07962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8259115..8259457 | 586..931 | 98 | -> | Minus |
3R | 8259547..8259702 | 430..585 | 100 | -> | Minus |
3R | 8259774..8260197 | 6..429 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:27:00 Download gff for
BO07962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4084837..4085179 | 586..931 | 98 | -> | Minus |
arm_3R | 4085269..4085424 | 430..585 | 100 | -> | Minus |
arm_3R | 4085496..4085919 | 6..429 | 98 | | Minus |
BO07962.5prime Sequence
928 bp (794 high quality bases) assembled on 2006-01-06
> BO07962.5prime
GAAGTTATCAGTCGACATGCCCCAATCCATCGCCAGGATCGCCAATGTCG
GTAAGGAGCACCGAACGGTGTCCAGTCACCCGAATTACCTTCAGTTCGAG
GAGCCCAAGTTCGACCTAAAGGATGTTACCGTTGAAGAGCTGGCCGCCGC
TGCTAACGTAACAGTGGACACTATCAAGCACGCCATTTACGTCCGGGAGC
AGCAGCTAAAGGCCGAACACCGGGCCCAACTGGCGGCCAAGCTAAGGGAA
GAGTTTATGCGCACCTCCACTGTGAGGACTACGACCACGACGACCACAAC
GACAACCACTACACCGCGCCCACAAAAGTCGCTGGCGGAGCACAAGGTGT
CCAAGGTAATGAATGCCCCTAAAGAGTACTATCCAGTGGGCTACGATAAG
AACTTTGACGACAACTTCAAATCCAAGGTGGACCTGCCACCTACAAGCTT
CTCCTGCGCTAAGCAAAAGCACTTCCCCGGTCTCTACGCTGACACCGACC
TTGGCTGCATGGTATTCCACGTATGCGCCCTAACCGATGACGGCATGGTG
CGGAAGTCGTTCCTTTGCCCGGAGAACACACTCTTCGACCAGACGATCTT
AAAGTGCAACTGGTGGTTCTACGTCGACTGCAGCTCTAGCACGAGCGTCT
ACGACTCCAACATTCCCATCTCAAAGAGCTATCAGCTGATGAAGTCGCTC
ACCTATTTCTCCAAGTACGCTGGCGGTCAGAGGCACGAGCAGGGTGGAGA
CAAAGACGAGAATGCGCTGGACATCGATTCGCTGAGAGAGTCGATGGAGG
GCGTGGCCCGGCGCCAGGAGCAAGCCAAGAAAGCGGAGCTGAGGGTGGAG
GAGCAGCGCAGCATGCCCAAGGAGGACCATGAGCACGTGGTGCCCGCGGA
GGCAGAGCAGCAGCTATCCNACGCAAGC
BO07962.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7549-PC | 1692 | CG7549-RC | 784..1686 | 17..919 | 4490 | 99.8 | Plus |
CG7549-PA | 1563 | CG7549-RA | 655..1557 | 17..919 | 4490 | 99.8 | Plus |
CG7549-PB | 909 | CG7549-RB | 1..903 | 17..919 | 4490 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:34:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtg-RF | 2276 | CG7549-RF | 837..1739 | 17..919 | 4500 | 99.9 | Plus |
mtg-RE | 2399 | CG7549-RE | 960..1862 | 17..919 | 4500 | 99.9 | Plus |
mtg-RH | 2233 | CG7549-RH | 794..1696 | 17..919 | 4500 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:34:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8259773..8260181 | 511..919 | 2030 | 99.8 | Plus |
3R | 32079331 | 3R | 8259119..8259459 | 17..357 | 1705 | 100 | Plus |
3R | 32079331 | 3R | 8259545..8259705 | 354..514 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:34:13 has no hits.
BO07962.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:33:53 Download gff for
BO07962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7549-PB | 1..909 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:22:32 Download gff for
BO07962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7549-PB | 1..909 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:27:02 Download gff for
BO07962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtg-RE | 955..1869 | 10..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:51:34 Download gff for
BO07962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtg-RH | 790..1704 | 10..928 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:51:34 Download gff for
BO07962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8259115..8259457 | 10..355 | 99 | -> | Plus |
3R | 8259547..8259702 | 356..511 | 100 | -> | Plus |
3R | 8259774..8260189 | 512..928 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:27:02 Download gff for
BO07962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4084837..4085179 | 10..355 | 99 | -> | Plus |
arm_3R | 4085269..4085424 | 356..511 | 100 | -> | Plus |
arm_3R | 4085496..4085911 | 512..928 | 98 | | Plus |
BO07962.complete Sequence
940 bp (940 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630999
> BO07962.complete
GAAGTTATCAGTCGACATGCCCCAATCCATCGCCAGGATCGCCAATGTCG
GTAAGGAGCACCGAACGGTGTCCAGTCACCCGAATTACCTTCAGTTCGAG
GAGCCCAAGTTCGACCTAAAGGATGTTACCGTTGAAGAGCTGGCCGCCGC
TGCTAACGTAACAGTGGACACTATCAAGCACGCCATTTACGTCCGGGAGC
AGCAGCTAAAGGCCGAACACCGGGCCCAACTGGCGGCCAAGCTAAGGGAA
GAGTTTATGCGCACCTCCACTGTGAGGACTACGACCACGACGACCACAAC
GACAACCACTACACCGCGCCCACAAAAGTCGCTGGCGGAGCACAAGGTGT
CCAAGGTAATGAATGCCCCTAAAGAGTACTATCCAGTGGGCTACGATAAG
AACTTTGACGACAACTTCAAATCCAAGGTGGACCTGCCACCTACAAGCTT
CTCCTGCGCTAAGCAAAAGCACTTCCCCGGTCTCTACGCTGACACCGACC
TTGGCTGCATGGTATTCCACGTATGCGCCCTAACCGATGACGGCATGGTG
CGGAAGTCGTTCCTTTGCCCGGAGAACACACTCTTCGACCAGACGATCTT
AAAGTGCAACTGGTGGTTCTACGTCGACTGCAGCTCTAGCACGAGCGTCT
ACGACTCCAACATTCCCATCTCAAAGAGCTATCAGCTGATGAAGTCGCTC
ACCTATTTCTCCAAGTACGCTGGCGGTCAGAGGCACGAGCAGGGTGGAGA
CAAAGACGAGAATGCGCTGGACATCGATTCGCTGAGAGAGTCGATGGAGG
GCGTGGCCCGGCGCCAGGAGCAAGCCAAGAAGGCGGAGCTGAGGGTGGAG
GAGCAGCGCAGCATGCCCAAGGAGGACCATGAGCACGTGGTGCCCGCGGA
GGCAGAGCAGCAGCTATCCAACGCAAGCTTTCTAGACCAT
BO07962.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:39:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtg-RF | 1548 | CG7549-PF | 640..1545 | 17..922 | 4530 | 100 | Plus |
mtg-RE | 1671 | CG7549-PE | 763..1668 | 17..922 | 4530 | 100 | Plus |
mtg-RH | 1164 | CG7549-PH | 256..1161 | 17..922 | 4530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:39:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtg-RF | 2276 | CG7549-RF | 837..1742 | 17..922 | 4530 | 100 | Plus |
mtg-RE | 2399 | CG7549-RE | 960..1865 | 17..922 | 4530 | 100 | Plus |
mtg-RH | 2233 | CG7549-RH | 794..1699 | 17..922 | 4530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:39:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8259773..8260184 | 511..922 | 2060 | 100 | Plus |
3R | 32079331 | 3R | 8259119..8259459 | 17..357 | 1705 | 100 | Plus |
3R | 32079331 | 3R | 8259545..8259705 | 354..514 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:39:18 has no hits.
BO07962.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:58 Download gff for
BO07962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7549-RB | 1..909 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:19 Download gff for
BO07962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7549-RB | 25..947 | 10..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:37 Download gff for
BO07962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtg-RE | 959..1864 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:59 Download gff for
BO07962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7549-RB | 25..947 | 10..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:30 Download gff for
BO07962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtg-RH | 794..1699 | 17..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:30 Download gff for
BO07962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8259119..8259457 | 17..355 | 100 | -> | Plus |
3R | 8259547..8259702 | 356..511 | 100 | -> | Plus |
3R | 8259774..8260184 | 512..924 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:37 Download gff for
BO07962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4084841..4085179 | 17..355 | 100 | -> | Plus |
arm_3R | 4085269..4085424 | 356..511 | 100 | -> | Plus |
arm_3R | 4085496..4085906 | 512..924 | 99 | | Plus |
BO07962.pep Sequence
Translation from 16 to 940
> BO07962.pep
MPQSIARIANVGKEHRTVSSHPNYLQFEEPKFDLKDVTVEELAAAANVTV
DTIKHAIYVREQQLKAEHRAQLAAKLREEFMRTSTVRTTTTTTTTTTTTP
RPQKSLAEHKVSKVMNAPKEYYPVGYDKNFDDNFKSKVDLPPTSFSCAKQ
KHFPGLYADTDLGCMVFHVCALTDDGMVRKSFLCPENTLFDQTILKCNWW
FYVDCSSSTSVYDSNIPISKSYQLMKSLTYFSKYAGGQRHEQGGDKDENA
LDIDSLRESMEGVARRQEQAKKAELRVEEQRSMPKEDHEHVVPAEAEQQL
SNASFLDH
BO07962.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:43:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtg-PH | 387 | CG7549-PH | 86..387 | 1..302 | 1583 | 100 | Plus |
mtg-PG | 387 | CG7549-PG | 86..387 | 1..302 | 1583 | 100 | Plus |
mtg-PF | 515 | CG7549-PF | 214..515 | 1..302 | 1583 | 100 | Plus |
mtg-PE | 556 | CG7549-PE | 255..556 | 1..302 | 1583 | 100 | Plus |
CG32036-PC | 173 | CG32036-PC | 26..160 | 110..235 | 178 | 29.6 | Plus |