Clone Sequence Records
BO07963.3prime Sequence
814 bp (769 high quality bases) assembled on 2006-01-06
> BO07963.3prime
ATGGTCTAGAAAGCTTGCATCAATGAGGAGCTCATAGTGCACCGATCCGA
TTCTCTCCTTGCGATCGTGTATGATGTTGCGAGCCCAAGCCCTGCACTCC
ACGTTGATGATGATTCCGCGTTTGGGGCGCTGGAAGTGCACCGCCACCAG
GGGACTCAAGTAGCCCTCGGAGTTCTGGTAGGGATAGAAGTAGCCGGGGA
ATCCCCTGATTGGCAGGTAGTTGACAGCACCAATGTTCTCCTGGTCGGCT
GGGTTCTCGCCCTCGCACGATACCCAAATGGTGTTTAGCTTTTCTGGCTG
CGTCTTCTCGACCTCTGCGATGTAGGTCTTCAAGCTGGCGGGCATGTTCG
CGGGCAAGTCATTCGATCTGTTGTAGTACTCCGGAATCCAGCCGTAGATC
TTGTTCAGCTTGAGGAAGATACACGGCGCACTCTTGTGGTAGCTGTAGTT
ATTCTCCTTGGTGCACGGCGACCACGTCTTGATGTCCACGTCGCACACCT
GACCCTTTGGCGGCGGCTGGTTGTAGTCGCAGTTGTAGATGTTCTGACCA
CGGCCGGGTGTTAGACCAGGTACTTTGTACACCGCAAGGAAATCATCCAG
GGAGTCTGTCCAGTGCTTGTAGTTCTCGTGTTGGGTGCCCTTGTACCAGA
TCAAAGTGCTTTCCACATTGTCCACCGGTGGCAGGGGTCGAAAACCTAGA
CCTGGATTTGTACCTATCAGGGAACGGTCCAGGGTCCACTTGGGAATGCG
AGGATCGAGAGTTTGGAAGAAGGCCCACATGCAGATGGCAACGAGGGCGG
CTAGGACTCCGTAG
BO07963.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9261-PD | 969 | nrv2-RD | 171..966 | 814..19 | 3980 | 100 | Minus |
CG9261-PC | 972 | nrv2-RC | 174..969 | 814..19 | 3980 | 100 | Minus |
CG9261-PA | 969 | nrv2-RA | 171..966 | 814..19 | 3980 | 100 | Minus |
CG9261-PE | 969 | nrv2-RE | 171..966 | 814..19 | 3980 | 100 | Minus |
CG9261-PF | 972 | nrv2-RF | 174..969 | 814..19 | 3980 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:15:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nrv2-RG | 2635 | CG9261-RG | 968..1763 | 814..19 | 3980 | 100 | Minus |
nrv2-RF | 2143 | CG9261-RF | 476..1271 | 814..19 | 3980 | 100 | Minus |
nrv2-RE | 1949 | CG9261-RE | 282..1077 | 814..19 | 3980 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:15:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6791031..6791328 | 289..586 | 1475 | 99.7 | Plus |
2L | 23513712 | 2L | 6790798..6790969 | 119..290 | 860 | 100 | Plus |
2L | 23513712 | 2L | 6791518..6791640 | 582..704 | 615 | 100 | Plus |
2L | 23513712 | 2L | 6791699..6791813 | 700..814 | 575 | 100 | Plus |
2L | 23513712 | 2L | 6790642..6790742 | 19..119 | 505 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 00:15:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 925..961 | 127..92 | 119 | 83.8 | Minus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 4633..4686 | 741..794 | 117 | 68.5 | Plus |
BO07963.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:33:54 Download gff for
BO07963.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nrv2-PA | 171..969 | 15..814 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:22:34 Download gff for
BO07963.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9261-PF | 174..972 | 15..814 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:31:16 Download gff for
BO07963.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nrv2-RE | 282..1083 | 11..814 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:41:49 Download gff for
BO07963.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nrv2-RE | 282..1083 | 11..814 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:41:49 Download gff for
BO07963.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6791518..6791637 | 582..701 | 100 | <- | Plus |
2L | 6791701..6791813 | 702..814 | 100 | | Plus |
2L | 6790636..6790742 | 11..119 | 96 | <- | Plus |
2L | 6790799..6790967 | 120..288 | 100 | <- | Plus |
2L | 6791031..6791323 | 289..581 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:31:16 Download gff for
BO07963.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6790636..6790742 | 11..119 | 96 | <- | Plus |
arm_2L | 6790799..6790967 | 120..288 | 100 | <- | Plus |
arm_2L | 6791031..6791323 | 289..581 | 100 | <- | Plus |
arm_2L | 6791518..6791637 | 582..701 | 100 | <- | Plus |
arm_2L | 6791701..6791813 | 702..814 | 100 | | Plus |
BO07963.5prime Sequence
909 bp (777 high quality bases) assembled on 2006-01-06
> BO07963.5prime
GAAGTTATCAGTCGACATGCCTACCATAACCGAGGATTGCATAGATGGAT
TCCAACAGTACTACTCGCGGCCACCGGAGAGGCCCAAGAAGAAGTCCCTG
AAGCAGATGGTCTACGACTCGGAGGACAACTCCTACTTCGGACGCTCGAT
GGACAGCTGGGCCAAAATCGGAATCTTCTATGTGGCCTTCTACGGAGTCC
TAGCCGCCCTCGTTGCCATCTGCATGTGGGCCTTCTTCCAAACTCTCGAT
CCTCGCATTCCCAAGTGGACCCTGGACCGTTCCCTGATAGGTACAAATCC
AGGTCTAGGTTTTCGACCCCTGCCACCGGTGGACAATGTGGAAAGCACTT
TGATCTGGTACAAGGGCACCCAACACGAGAACTACAAGCACTGGACAGAC
TCCCTGGATGATTTCCTTGCGGTGTACAAAGTACCTGGTCTAACACCCGG
CCGTGGTCAGAACATCTACAACTGCGACTACAACCAGCCGCCGCCAAAGG
GTCAGGTGTGCGACGTGGACATCAAGACGTGGTCGCCGTGCACCAAGGAG
AATAACTACAGCTACCACAAGAGTGCGCCGTGTATCTTCCTCAAGCTGAA
CAAGATCTACGGCTGGATTCCGGAGTACTACAACAGATCGAATGACTTGC
CCGCGAACATGCCCGCCAGCTTGAAGACCTACATCGCAGAGGTCGAGAAG
ACGCAGCCAGAAAAGCTAAACACCATTTGGGTATCGTGCGAGGGCGAGAA
CCCAGCCGACCAGGAGAACATTGGTGCTGTNCACTACCTGCCAATCAGGG
GATTCCCCGGCTACTTCTATCCCTACCAGAACTCCGAGGGCTACTTGAGT
CCCCTGGTGGCGGTGCACTTCCCAGCGCCCCAACGCNGAATCATCATNCA
CGTGGAGTG
BO07963.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9261-PC | 972 | nrv2-RC | 1..856 | 17..872 | 4236 | 99.7 | Plus |
CG9261-PF | 972 | nrv2-RF | 1..856 | 17..872 | 4236 | 99.7 | Plus |
CG9261-PD | 969 | nrv2-RD | 139..853 | 158..872 | 3531 | 99.7 | Plus |
CG9261-PA | 969 | nrv2-RA | 139..853 | 158..872 | 3531 | 99.7 | Plus |
CG9261-PE | 969 | nrv2-RE | 139..853 | 158..872 | 3531 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:48:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nrv2-RG | 2635 | CG9261-RG | 795..1687 | 17..909 | 4357 | 99.2 | Plus |
nrv2-RF | 2143 | CG9261-RF | 303..1195 | 17..909 | 4357 | 99.2 | Plus |
nrv2-RC | 2668 | CG9261-RC | 828..1720 | 17..909 | 4357 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:48:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6791031..6791328 | 715..418 | 1475 | 99.7 | Minus |
2L | 23513712 | 2L | 6790801..6790969 | 883..714 | 774 | 98.2 | Minus |
2L | 23513712 | 2L | 6796337..6796481 | 161..17 | 725 | 100 | Minus |
2L | 23513712 | 2L | 6791699..6791842 | 304..161 | 720 | 100 | Minus |
2L | 23513712 | 2L | 6791518..6791640 | 422..300 | 615 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 17:48:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 4633..4686 | 263..210 | 117 | 68.5 | Minus |
BO07963.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:33:55 Download gff for
BO07963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nrv2-PC | 1..893 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:22:35 Download gff for
BO07963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9261-PF | 1..893 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:45:21 Download gff for
BO07963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nrv2-RC | 823..1720 | 11..909 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:20:05 Download gff for
BO07963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nrv2-RC | 823..1720 | 11..909 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:20:05 Download gff for
BO07963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6796337..6796486 | 11..161 | 98 | | Minus |
2L | 6790801..6790967 | 716..883 | 98 | <- | Minus |
2L | 6791031..6791323 | 423..715 | 100 | <- | Minus |
2L | 6791518..6791637 | 303..422 | 100 | <- | Minus |
2L | 6791701..6791841 | 162..302 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:45:21 Download gff for
BO07963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6790801..6790967 | 716..883 | 98 | <- | Minus |
arm_2L | 6791031..6791323 | 423..715 | 100 | <- | Minus |
arm_2L | 6791518..6791637 | 303..422 | 100 | <- | Minus |
arm_2L | 6791701..6791841 | 162..302 | 100 | <- | Minus |
arm_2L | 6796337..6796486 | 11..161 | 98 | | Minus |
BO07963.complete Sequence
1003 bp (1003 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631000
> BO07963.complete
GAAGTTATCAGTCGACATGCCTACCATAACCGAGGATTGCATAGATGGAT
TCCAACAGTACTACTCGCGGCCACCGGAGAGGCCCAAGAAGAAGTCCCTG
AAGCAGATGGTCTACGACTCGGAGGACAACTCCTACTTCGGACGCTCGAT
GGACAGCTGGGCCAAAATCGGAATCTTCTATGTGGCCTTCTACGGAGTCC
TAGCCGCCCTCGTTGCCATCTGCATGTGGGCCTTCTTCCAAACTCTCGAT
CCTCGCATTCCCAAGTGGACCCTGGACCGTTCCCTGATAGGTACAAATCC
AGGTCTAGGTTTTCGACCCCTGCCACCGGTGGACAATGTGGAAAGCACTT
TGATCTGGTACAAGGGCACCCAACACGAGAACTACAAGCACTGGACAGAC
TCCCTGGATGATTTCCTTGCGGTGTACAAAGTACCTGGTCTAACACCCGG
CCGTGGTCAGAACATCTACAACTGCGACTACAACCAGCCGCCGCCAAAGG
GTCAGGTGTGCGACGTGGACATCAAGACGTGGTCGCCGTGCACCAAGGAG
AATAACTACAGCTACCACAAGAGTGCGCCGTGTATCTTCCTCAAGCTGAA
CAAGATCTACGGCTGGATTCCGGAGTACTACAACAGATCGAATGACTTGC
CCGCGAACATGCCCGCCAGCTTGAAGACCTACATCGCAGAGGTCGAGAAG
ACGCAGCCAGAAAAGCTAAACACCATTTGGGTATCGTGCGAGGGCGAGAA
CCCAGCCGACCAGGAGAACATTGGTGCTGTCAACTACCTGCCAATCAGGG
GATTCCCCGGCTACTTCTATCCCTACCAGAACTCCGAGGGCTACTTGAGT
CCCCTGGTGGCGGTGCACTTCCAGCGCCCCAAACGCGGAATCATCATCAA
CGTGGAGTGCAGGGCTTGGGCTCGCAACATCATACACGATCGCAAGGAGA
GAATCGGATCGGTGCACTATGAGCTCCTCATTGATGCAAGCTTTCTAGAC
CAT
BO07963.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:15:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nrv2-RG | 972 | CG9261-PG | 1..969 | 17..985 | 4845 | 100 | Plus |
nrv2-RF | 972 | CG9261-PF | 1..969 | 17..985 | 4845 | 100 | Plus |
nrv2-RC | 972 | CG9261-PC | 1..969 | 17..985 | 4845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nrv2-RG | 2635 | CG9261-RG | 795..1763 | 17..985 | 4845 | 100 | Plus |
nrv2-RF | 2143 | CG9261-RF | 303..1271 | 17..985 | 4845 | 100 | Plus |
nrv2-RC | 2668 | CG9261-RC | 828..1796 | 17..985 | 4845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6791031..6791328 | 715..418 | 1475 | 99.7 | Minus |
2L | 23513712 | 2L | 6790798..6790969 | 885..714 | 860 | 100 | Minus |
2L | 23513712 | 2L | 6796337..6796481 | 161..17 | 725 | 100 | Minus |
2L | 23513712 | 2L | 6791699..6791842 | 304..161 | 720 | 100 | Minus |
2L | 23513712 | 2L | 6791518..6791640 | 422..300 | 615 | 100 | Minus |
2L | 23513712 | 2L | 6790642..6790742 | 985..885 | 505 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 16:14:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 925..961 | 877..912 | 119 | 83.8 | Plus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 4633..4686 | 263..210 | 117 | 68.5 | Minus |
BO07963.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:00 Download gff for
BO07963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nrv2-RF | 1..972 | 17..989 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:20 Download gff for
BO07963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nrv2-RF | 295..1274 | 11..993 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:17 Download gff for
BO07963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nrv2-RC | 828..1796 | 17..987 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:00 Download gff for
BO07963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nrv2-RF | 295..1274 | 11..993 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:19 Download gff for
BO07963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nrv2-RC | 828..1796 | 17..987 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:19 Download gff for
BO07963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6790640..6790742 | 885..987 | 98 | <- | Minus |
2L | 6790799..6790967 | 716..884 | 100 | <- | Minus |
2L | 6791031..6791323 | 423..715 | 100 | <- | Minus |
2L | 6791518..6791637 | 303..422 | 100 | <- | Minus |
2L | 6791701..6791841 | 162..302 | 100 | <- | Minus |
2L | 6796337..6796481 | 17..161 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:17 Download gff for
BO07963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6790640..6790742 | 885..987 | 98 | <- | Minus |
arm_2L | 6790799..6790967 | 716..884 | 100 | <- | Minus |
arm_2L | 6791031..6791323 | 423..715 | 100 | <- | Minus |
arm_2L | 6791518..6791637 | 303..422 | 100 | <- | Minus |
arm_2L | 6791701..6791841 | 162..302 | 100 | <- | Minus |
arm_2L | 6796337..6796481 | 17..161 | 100 | | Minus |
BO07963.pep Sequence
Translation from 16 to 1003
> BO07963.pep
MPTITEDCIDGFQQYYSRPPERPKKKSLKQMVYDSEDNSYFGRSMDSWAK
IGIFYVAFYGVLAALVAICMWAFFQTLDPRIPKWTLDRSLIGTNPGLGFR
PLPPVDNVESTLIWYKGTQHENYKHWTDSLDDFLAVYKVPGLTPGRGQNI
YNCDYNQPPPKGQVCDVDIKTWSPCTKENNYSYHKSAPCIFLKLNKIYGW
IPEYYNRSNDLPANMPASLKTYIAEVEKTQPEKLNTIWVSCEGENPADQE
NIGAVNYLPIRGFPGYFYPYQNSEGYLSPLVAVHFQRPKRGIIINVECRA
WARNIIHDRKERIGSVHYELLIDASFLDH
BO07963.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nrv2-PG | 323 | CG9261-PG | 1..323 | 1..323 | 1792 | 100 | Plus |
nrv2-PF | 323 | CG9261-PF | 1..323 | 1..323 | 1792 | 100 | Plus |
nrv2-PC | 323 | CG9261-PC | 1..323 | 1..323 | 1792 | 100 | Plus |
nrv2-PE | 322 | CG9261-PE | 21..322 | 22..323 | 1589 | 94.7 | Plus |
nrv2-PA | 322 | CG9261-PA | 21..322 | 22..323 | 1589 | 94.7 | Plus |