Clone BO07963 Report

Search the DGRC for BO07963

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:79
Well:63
Vector:pDNR-Dual
Associated Gene/Transcriptnrv2-RC
Protein status:BO07963.pep: validated full length
Sequenced Size:1003

Clone Sequence Records

BO07963.3prime Sequence

814 bp (769 high quality bases) assembled on 2006-01-06

> BO07963.3prime
ATGGTCTAGAAAGCTTGCATCAATGAGGAGCTCATAGTGCACCGATCCGA
TTCTCTCCTTGCGATCGTGTATGATGTTGCGAGCCCAAGCCCTGCACTCC
ACGTTGATGATGATTCCGCGTTTGGGGCGCTGGAAGTGCACCGCCACCAG
GGGACTCAAGTAGCCCTCGGAGTTCTGGTAGGGATAGAAGTAGCCGGGGA
ATCCCCTGATTGGCAGGTAGTTGACAGCACCAATGTTCTCCTGGTCGGCT
GGGTTCTCGCCCTCGCACGATACCCAAATGGTGTTTAGCTTTTCTGGCTG
CGTCTTCTCGACCTCTGCGATGTAGGTCTTCAAGCTGGCGGGCATGTTCG
CGGGCAAGTCATTCGATCTGTTGTAGTACTCCGGAATCCAGCCGTAGATC
TTGTTCAGCTTGAGGAAGATACACGGCGCACTCTTGTGGTAGCTGTAGTT
ATTCTCCTTGGTGCACGGCGACCACGTCTTGATGTCCACGTCGCACACCT
GACCCTTTGGCGGCGGCTGGTTGTAGTCGCAGTTGTAGATGTTCTGACCA
CGGCCGGGTGTTAGACCAGGTACTTTGTACACCGCAAGGAAATCATCCAG
GGAGTCTGTCCAGTGCTTGTAGTTCTCGTGTTGGGTGCCCTTGTACCAGA
TCAAAGTGCTTTCCACATTGTCCACCGGTGGCAGGGGTCGAAAACCTAGA
CCTGGATTTGTACCTATCAGGGAACGGTCCAGGGTCCACTTGGGAATGCG
AGGATCGAGAGTTTGGAAGAAGGCCCACATGCAGATGGCAACGAGGGCGG
CTAGGACTCCGTAG

BO07963.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG9261-PD 969 nrv2-RD 171..966 814..19 3980 100 Minus
CG9261-PC 972 nrv2-RC 174..969 814..19 3980 100 Minus
CG9261-PA 969 nrv2-RA 171..966 814..19 3980 100 Minus
CG9261-PE 969 nrv2-RE 171..966 814..19 3980 100 Minus
CG9261-PF 972 nrv2-RF 174..969 814..19 3980 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:15:26
Subject Length Description Subject Range Query Range Score Percent Strand
nrv2-RG 2635 CG9261-RG 968..1763 814..19 3980 100 Minus
nrv2-RF 2143 CG9261-RF 476..1271 814..19 3980 100 Minus
nrv2-RE 1949 CG9261-RE 282..1077 814..19 3980 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:15:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6791031..6791328 289..586 1475 99.7 Plus
2L 23513712 2L 6790798..6790969 119..290 860 100 Plus
2L 23513712 2L 6791518..6791640 582..704 615 100 Plus
2L 23513712 2L 6791699..6791813 700..814 575 100 Plus
2L 23513712 2L 6790642..6790742 19..119 505 100 Plus
Blast to na_te.dros performed 2015-02-13 00:15:23
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 925..961 127..92 119 83.8 Minus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 4633..4686 741..794 117 68.5 Plus

BO07963.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:33:54 Download gff for BO07963.3prime
Subject Subject Range Query Range Percent Splice Strand
nrv2-PA 171..969 15..814 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:22:34 Download gff for BO07963.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9261-PF 174..972 15..814 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:31:16 Download gff for BO07963.3prime
Subject Subject Range Query Range Percent Splice Strand
nrv2-RE 282..1083 11..814 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:41:49 Download gff for BO07963.3prime
Subject Subject Range Query Range Percent Splice Strand
nrv2-RE 282..1083 11..814 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:41:49 Download gff for BO07963.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6791518..6791637 582..701 100 <- Plus
2L 6791701..6791813 702..814 100   Plus
2L 6790636..6790742 11..119 96 <- Plus
2L 6790799..6790967 120..288 100 <- Plus
2L 6791031..6791323 289..581 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:31:16 Download gff for BO07963.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6790636..6790742 11..119 96 <- Plus
arm_2L 6790799..6790967 120..288 100 <- Plus
arm_2L 6791031..6791323 289..581 100 <- Plus
arm_2L 6791518..6791637 582..701 100 <- Plus
arm_2L 6791701..6791813 702..814 100   Plus

BO07963.5prime Sequence

909 bp (777 high quality bases) assembled on 2006-01-06

> BO07963.5prime
GAAGTTATCAGTCGACATGCCTACCATAACCGAGGATTGCATAGATGGAT
TCCAACAGTACTACTCGCGGCCACCGGAGAGGCCCAAGAAGAAGTCCCTG
AAGCAGATGGTCTACGACTCGGAGGACAACTCCTACTTCGGACGCTCGAT
GGACAGCTGGGCCAAAATCGGAATCTTCTATGTGGCCTTCTACGGAGTCC
TAGCCGCCCTCGTTGCCATCTGCATGTGGGCCTTCTTCCAAACTCTCGAT
CCTCGCATTCCCAAGTGGACCCTGGACCGTTCCCTGATAGGTACAAATCC
AGGTCTAGGTTTTCGACCCCTGCCACCGGTGGACAATGTGGAAAGCACTT
TGATCTGGTACAAGGGCACCCAACACGAGAACTACAAGCACTGGACAGAC
TCCCTGGATGATTTCCTTGCGGTGTACAAAGTACCTGGTCTAACACCCGG
CCGTGGTCAGAACATCTACAACTGCGACTACAACCAGCCGCCGCCAAAGG
GTCAGGTGTGCGACGTGGACATCAAGACGTGGTCGCCGTGCACCAAGGAG
AATAACTACAGCTACCACAAGAGTGCGCCGTGTATCTTCCTCAAGCTGAA
CAAGATCTACGGCTGGATTCCGGAGTACTACAACAGATCGAATGACTTGC
CCGCGAACATGCCCGCCAGCTTGAAGACCTACATCGCAGAGGTCGAGAAG
ACGCAGCCAGAAAAGCTAAACACCATTTGGGTATCGTGCGAGGGCGAGAA
CCCAGCCGACCAGGAGAACATTGGTGCTGTNCACTACCTGCCAATCAGGG
GATTCCCCGGCTACTTCTATCCCTACCAGAACTCCGAGGGCTACTTGAGT
CCCCTGGTGGCGGTGCACTTCCCAGCGCCCCAACGCNGAATCATCATNCA
CGTGGAGTG

BO07963.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG9261-PC 972 nrv2-RC 1..856 17..872 4236 99.7 Plus
CG9261-PF 972 nrv2-RF 1..856 17..872 4236 99.7 Plus
CG9261-PD 969 nrv2-RD 139..853 158..872 3531 99.7 Plus
CG9261-PA 969 nrv2-RA 139..853 158..872 3531 99.7 Plus
CG9261-PE 969 nrv2-RE 139..853 158..872 3531 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
nrv2-RG 2635 CG9261-RG 795..1687 17..909 4357 99.2 Plus
nrv2-RF 2143 CG9261-RF 303..1195 17..909 4357 99.2 Plus
nrv2-RC 2668 CG9261-RC 828..1720 17..909 4357 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6791031..6791328 715..418 1475 99.7 Minus
2L 23513712 2L 6790801..6790969 883..714 774 98.2 Minus
2L 23513712 2L 6796337..6796481 161..17 725 100 Minus
2L 23513712 2L 6791699..6791842 304..161 720 100 Minus
2L 23513712 2L 6791518..6791640 422..300 615 100 Minus
Blast to na_te.dros performed 2015-02-11 17:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 4633..4686 263..210 117 68.5 Minus

BO07963.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:33:55 Download gff for BO07963.5prime
Subject Subject Range Query Range Percent Splice Strand
nrv2-PC 1..893 17..909 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:22:35 Download gff for BO07963.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9261-PF 1..893 17..909 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:45:21 Download gff for BO07963.5prime
Subject Subject Range Query Range Percent Splice Strand
nrv2-RC 823..1720 11..909 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:20:05 Download gff for BO07963.5prime
Subject Subject Range Query Range Percent Splice Strand
nrv2-RC 823..1720 11..909 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:20:05 Download gff for BO07963.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6796337..6796486 11..161 98   Minus
2L 6790801..6790967 716..883 98 <- Minus
2L 6791031..6791323 423..715 100 <- Minus
2L 6791518..6791637 303..422 100 <- Minus
2L 6791701..6791841 162..302 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:45:21 Download gff for BO07963.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6790801..6790967 716..883 98 <- Minus
arm_2L 6791031..6791323 423..715 100 <- Minus
arm_2L 6791518..6791637 303..422 100 <- Minus
arm_2L 6791701..6791841 162..302 100 <- Minus
arm_2L 6796337..6796486 11..161 98   Minus

BO07963.complete Sequence

1003 bp (1003 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631000

> BO07963.complete
GAAGTTATCAGTCGACATGCCTACCATAACCGAGGATTGCATAGATGGAT
TCCAACAGTACTACTCGCGGCCACCGGAGAGGCCCAAGAAGAAGTCCCTG
AAGCAGATGGTCTACGACTCGGAGGACAACTCCTACTTCGGACGCTCGAT
GGACAGCTGGGCCAAAATCGGAATCTTCTATGTGGCCTTCTACGGAGTCC
TAGCCGCCCTCGTTGCCATCTGCATGTGGGCCTTCTTCCAAACTCTCGAT
CCTCGCATTCCCAAGTGGACCCTGGACCGTTCCCTGATAGGTACAAATCC
AGGTCTAGGTTTTCGACCCCTGCCACCGGTGGACAATGTGGAAAGCACTT
TGATCTGGTACAAGGGCACCCAACACGAGAACTACAAGCACTGGACAGAC
TCCCTGGATGATTTCCTTGCGGTGTACAAAGTACCTGGTCTAACACCCGG
CCGTGGTCAGAACATCTACAACTGCGACTACAACCAGCCGCCGCCAAAGG
GTCAGGTGTGCGACGTGGACATCAAGACGTGGTCGCCGTGCACCAAGGAG
AATAACTACAGCTACCACAAGAGTGCGCCGTGTATCTTCCTCAAGCTGAA
CAAGATCTACGGCTGGATTCCGGAGTACTACAACAGATCGAATGACTTGC
CCGCGAACATGCCCGCCAGCTTGAAGACCTACATCGCAGAGGTCGAGAAG
ACGCAGCCAGAAAAGCTAAACACCATTTGGGTATCGTGCGAGGGCGAGAA
CCCAGCCGACCAGGAGAACATTGGTGCTGTCAACTACCTGCCAATCAGGG
GATTCCCCGGCTACTTCTATCCCTACCAGAACTCCGAGGGCTACTTGAGT
CCCCTGGTGGCGGTGCACTTCCAGCGCCCCAAACGCGGAATCATCATCAA
CGTGGAGTGCAGGGCTTGGGCTCGCAACATCATACACGATCGCAAGGAGA
GAATCGGATCGGTGCACTATGAGCTCCTCATTGATGCAAGCTTTCTAGAC
CAT

BO07963.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:15:00
Subject Length Description Subject Range Query Range Score Percent Strand
nrv2-RG 972 CG9261-PG 1..969 17..985 4845 100 Plus
nrv2-RF 972 CG9261-PF 1..969 17..985 4845 100 Plus
nrv2-RC 972 CG9261-PC 1..969 17..985 4845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
nrv2-RG 2635 CG9261-RG 795..1763 17..985 4845 100 Plus
nrv2-RF 2143 CG9261-RF 303..1271 17..985 4845 100 Plus
nrv2-RC 2668 CG9261-RC 828..1796 17..985 4845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6791031..6791328 715..418 1475 99.7 Minus
2L 23513712 2L 6790798..6790969 885..714 860 100 Minus
2L 23513712 2L 6796337..6796481 161..17 725 100 Minus
2L 23513712 2L 6791699..6791842 304..161 720 100 Minus
2L 23513712 2L 6791518..6791640 422..300 615 100 Minus
2L 23513712 2L 6790642..6790742 985..885 505 100 Minus
Blast to na_te.dros performed 2014-11-27 16:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 925..961 877..912 119 83.8 Plus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 4633..4686 263..210 117 68.5 Minus

BO07963.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:00 Download gff for BO07963.complete
Subject Subject Range Query Range Percent Splice Strand
nrv2-RF 1..972 17..989 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:20 Download gff for BO07963.complete
Subject Subject Range Query Range Percent Splice Strand
nrv2-RF 295..1274 11..993 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:17 Download gff for BO07963.complete
Subject Subject Range Query Range Percent Splice Strand
nrv2-RC 828..1796 17..987 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:00 Download gff for BO07963.complete
Subject Subject Range Query Range Percent Splice Strand
nrv2-RF 295..1274 11..993 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:19 Download gff for BO07963.complete
Subject Subject Range Query Range Percent Splice Strand
nrv2-RC 828..1796 17..987 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:19 Download gff for BO07963.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6790640..6790742 885..987 98 <- Minus
2L 6790799..6790967 716..884 100 <- Minus
2L 6791031..6791323 423..715 100 <- Minus
2L 6791518..6791637 303..422 100 <- Minus
2L 6791701..6791841 162..302 100 <- Minus
2L 6796337..6796481 17..161 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:17 Download gff for BO07963.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6790640..6790742 885..987 98 <- Minus
arm_2L 6790799..6790967 716..884 100 <- Minus
arm_2L 6791031..6791323 423..715 100 <- Minus
arm_2L 6791518..6791637 303..422 100 <- Minus
arm_2L 6791701..6791841 162..302 100 <- Minus
arm_2L 6796337..6796481 17..161 100   Minus

BO07963.pep Sequence

Translation from 16 to 1003

> BO07963.pep
MPTITEDCIDGFQQYYSRPPERPKKKSLKQMVYDSEDNSYFGRSMDSWAK
IGIFYVAFYGVLAALVAICMWAFFQTLDPRIPKWTLDRSLIGTNPGLGFR
PLPPVDNVESTLIWYKGTQHENYKHWTDSLDDFLAVYKVPGLTPGRGQNI
YNCDYNQPPPKGQVCDVDIKTWSPCTKENNYSYHKSAPCIFLKLNKIYGW
IPEYYNRSNDLPANMPASLKTYIAEVEKTQPEKLNTIWVSCEGENPADQE
NIGAVNYLPIRGFPGYFYPYQNSEGYLSPLVAVHFQRPKRGIIINVECRA
WARNIIHDRKERIGSVHYELLIDASFLDH

BO07963.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:14
Subject Length Description Subject Range Query Range Score Percent Strand
nrv2-PG 323 CG9261-PG 1..323 1..323 1792 100 Plus
nrv2-PF 323 CG9261-PF 1..323 1..323 1792 100 Plus
nrv2-PC 323 CG9261-PC 1..323 1..323 1792 100 Plus
nrv2-PE 322 CG9261-PE 21..322 22..323 1589 94.7 Plus
nrv2-PA 322 CG9261-PA 21..322 22..323 1589 94.7 Plus