Clone BO07971 Report

Search the DGRC for BO07971

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:79
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptSdhA-RA
Protein status:BO07971.pep:
Sequenced Size:2017

Clone Sequence Records

BO07971.3prime Sequence

940 bp (793 high quality bases) assembled on 2006-01-06

> BO07971.3prime
ATGGTCTAGAAAGCTTGCATAGGAGCGAATCGCTGGTGGAACAGTAGAGA
CTTCGTTGTCCAGCGTGGTATCGATCACGTTTCTGTAGTCCAGCGTAATG
TCTCCGTTGTCATTGCACACCCACGAGAGCGTGTGCTTGCGCCAGTGCTG
ATCCATGGGCTTCTTCTGCTGACCATCCAGGGGCTTGCTGAAATCGTATT
CATCCTCGCGAACCTTGAAGTCCTCGCGGGCGTGGGCACCTCGCGATTCC
TTGCGCGCCTCAGCGCTCACAATAGTCATCTGGGCATTGGCCAACAGATT
CTGCAGCTCCAGCGTCTCCACCAGATCGGAGTTCCAGATAAGCGACCTAT
CGACAACCTTGATGTCCTTGAACTGCTTGTAGATCTCCTTCATCTTGTTC
ACACCGTCCTGCAGGATGGGGCCATCGCGGAACACAGCAGCATGATGCTG
CATGGTCTTCTGCATCTTCAGACGCAGATCGGCGGTGGTGATCTGGCCGT
TGGCATGGCGCAGCTTATCGAGGTTAGCAACAGAGGCCTCGCCAGCGTTT
TCCTTGAGGGTGGGAGCCGGTGCACCAGGCTTATTCAGCTCGGCGATGGT
CTTGGCGCATGCACGTCCGAAGACCACCAGATCCAGCAGAGAGTTGGCAC
CCAGACGGTTGGCACCATGCACCGAGCTGGAAGCAGCCTCACCAGCGGCA
TACAGTCCCGGCACAATCACATCCTTGCCATCCTTGTCAATGGTGATTAC
CTGGCCGCGATAGTTAGTCGGCACACCGCCCATGTTGTAATGCACGGTGG
GCAACACGGGGATGGGCTCACGGGTCACATCAACACCGGCGAAGATCATG
GCGGTCTCGGAGATGCCAGGCAGACGCTCCGCGAGCTGCTTGGGCGGCAA
GTGGTGCAGTTGCAAGTACACGTGATCCTTCTCGGGTCCA

BO07971.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG17246-PC 1986 Scs-fp-RC 1062..1983 940..19 4585 99.8 Minus
CG17246-PB 1986 Scs-fp-RB 1062..1983 940..19 4585 99.8 Minus
CG17246-PA 1986 Scs-fp-RA 1062..1983 940..19 4585 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:32:37
Subject Length Description Subject Range Query Range Score Percent Strand
SdhA-RA 2750 CG17246-RA 1290..2211 940..19 4595 99.9 Minus
SdhA-RC 2663 CG17246-RC 1203..2124 940..19 4595 99.9 Minus
SdhA-RB 2617 CG17246-RB 1157..2078 940..19 4595 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:32:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19392844..19393439 345..940 2965 99.8 Plus
2R 25286936 2R 19392402..19392578 19..195 885 100 Plus
2R 25286936 2R 19392638..19392791 195..348 770 100 Plus
Blast to na_te.dros performed on 2015-02-13 16:32:36 has no hits.

BO07971.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:34:11 Download gff for BO07971.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17246-PA 1063..1986 15..939 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:22:56 Download gff for BO07971.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17246-PA 1063..1986 15..939 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:13:26 Download gff for BO07971.3prime
Subject Subject Range Query Range Percent Splice Strand
SdhA-RB 1158..2081 15..939 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 19:15:23 Download gff for BO07971.3prime
Subject Subject Range Query Range Percent Splice Strand
SdhA-RB 1158..2081 15..939 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:15:23 Download gff for BO07971.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19392398..19392578 15..195 98 <- Plus
2R 19392639..19392789 196..346 100 <- Plus
2R 19392846..19393438 347..939 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:13:26 Download gff for BO07971.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15279903..15280083 15..195 98 <- Plus
arm_2R 15280144..15280294 196..346 100 <- Plus
arm_2R 15280351..15280943 347..939 99   Plus

BO07971.5prime Sequence

938 bp (868 high quality bases) assembled on 2006-01-06

> BO07971.5prime
GAAGTTATCAGTCGACATGTCCGGAATCATGCGTGTGCCATCGATTTTGG
CCAAAAATGCAGTCGCCTCCATGCAACGTGCCGCAGCCGTTGGAGTGCAG
CGCAGTTACCACATCACACACGGCCGCCAGCAGGCCTCGGCGGCGAATCC
GGACAAGATATCGAAGCAGTACCCGGTGGTGGATCACGCCTACGATGCGA
TCGTCGTGGGAGCAGGAGGAGCCGGCTTGCGGGCGGCTTTTGGCCTGGTG
GCTGAGGGATTTCGCACGGCGGTGATCACCAAGCTTTTCCCCACCCGCTC
GCACACGATCGCCGCCCAGGGCGGTATCAATGCCGCTCTCGGCAACATGG
AGGAGGACGACTGGAAGTGGCACATGTACGACACGGTCAAGGGCTCCGAT
TGGCTGGGCGACCAGGATGCCATCCACTACATGACCCGCGAGGCGCCCAA
GGCTGTCATTGAGCTGGAGAACTACGGCATGCCCTTCTCGCGTACCCAGG
ACGGTAAGATCTACCAGCGCGCCTTCGGTGGACAGAGTCTGAAGTTCGGC
AAGGGCGGACAGGCCCATCGCTGCTGTGCTGTGGCTGATCGTACTGGTCA
CTCGCTGCTGCACACGCTATACGGTCAATCGCTGAGCTACGACTGCAACT
ACTTTGTGGAGTACTTTGCCCTGGATCTGATCTTCGAGGACGGCGAGTGC
CGTGGTGTGCTGGCCCTGAACCTGGAGGATGGCACACTGCACCGATTCCG
CGCTAAGAACACGGTCATTGCCACCGGTGGATATGGACGAGCATTCTTCT
CCTGCACCTCGGCGCACACATGTACCGGTGACGGTACTGCTATGGTTGCA
CGCCAGGGACTGCCCTCTCANGATCTGGAGTTCGTGCAGTTCCATCCTAC
TGGCATCTACGGCGCCGGATGTCTCATCACCGAGGGCT

BO07971.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG17246-PC 1986 Scs-fp-RC 1..922 17..938 4591 99.8 Plus
CG17246-PB 1986 Scs-fp-RB 1..922 17..938 4591 99.8 Plus
CG17246-PA 1986 Scs-fp-RA 1..922 17..938 4591 99.8 Plus
CG5718-PA 1956 CG5718-RA 838..890 884..936 140 90.5 Plus
CG5718-PA 1956 CG5718-RA 325..356 377..408 135 96.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
SdhA-RA 2750 CG17246-RA 227..1150 15..938 4609 99.9 Plus
SdhA-RC 2663 CG17246-RC 140..1063 15..938 4609 99.9 Plus
SdhA-RB 2617 CG17246-RB 94..1017 15..938 4609 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19393579..19394444 938..73 4319 99.9 Minus
3L 28110227 3L 11924225..11924551 519..193 450 75.8 Minus
2R 25286936 2R 19395687..19395745 73..15 295 100 Minus
3L 28110227 3L 11923802..11923866 936..872 205 87.7 Minus
Blast to na_te.dros performed on 2015-02-10 17:45:21 has no hits.

BO07971.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:34:12 Download gff for BO07971.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17246-PA 1..922 17..938 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:22:57 Download gff for BO07971.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17246-PA 1..922 17..938 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:10:00 Download gff for BO07971.5prime
Subject Subject Range Query Range Percent Splice Strand
SdhA-RB 87..1017 9..938 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:30:54 Download gff for BO07971.5prime
Subject Subject Range Query Range Percent Splice Strand
SdhA-RB 87..1017 9..938 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:30:54 Download gff for BO07971.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19393579..19394443 74..938 99 <- Minus
2R 19395687..19395752 9..73 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:10:00 Download gff for BO07971.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15281084..15281948 74..938 99 <- Minus
arm_2R 15283192..15283257 9..73 95   Minus

BO07971.complete Sequence

2017 bp assembled on 2006-12-18

GenBank Submission: FJ631002

> BO07971.complete
GAAGTTATCAGTCGACATGTCCGGAATCATGCGTGTGCCATCGATTTTGG
CCAAAAATGCAGTCGCCTCCATGCAACGTGCCGCAGCCGTTGGAGTGCAG
CGCAGTTACCACATCACACACGGCCGCCAGCAGGCCTCGGCGGCGAATCC
GGACAAGATATCGAAGCAGTACCCGGTGGTGGATCACGCCTACGATGCGA
TCGTCGTGGGAGCAGGAGGAGCCGGCTTGCGGGCGGCTTTTGGCCTGGTG
GCTGAGGGATTTCGCACGGCGGTGATCACCAAGCTTTTCCCCACCCGCTC
GCACACGATCGCCGCCCAGGGCGGTATCAATGCCGCTCTCGGCAACATGG
AGGAGGACGACTGGAAGTGGCACATGTACGACACGGTCAAGGGCTCCGAT
TGGCTGGGCGACCAGGATGCCATCCACTACATGACCCGCGAGGCGCCCAA
GGCTGTCATTGAGCTGGAGAACTACGGCATGCCCTTCTCGCGTACCCAGG
ACGGTAAGATCTACCAGCGCGCCTTCGGTGGACAGAGTCTGAAGTTCGGC
AAGGGCGGACAGGCCCATCGCTGCTGTGCTGTGGCTGATCGTACTGGTCA
CTCGCTGCTGCACACGCTATACGGTCAATCGCTGAGCTACGACTGCAACT
ACTTTGTGGAGTACTTTGCCCTGGATCTGATCTTCGAGGACGGCGAGTGC
CGTGGTGTGCTGGCCCTGAACCTGGAGGATGGCACACTGCACCGATTCCG
CGCTAAGAACACGGTCATTGCCACCGGTGGATATGGACGAGCATTCTTCT
CCTGCACCTCGGCGCACACATGTACCGGTGACGGTACTGCTATGGTTGCA
CGCCAGGGACTGCCCTCTCAGGATCTGGAGTTCGTGCAGTTCCATCCTAC
TGGCATCTACGGCGCCGGATGTCTCATCACCGAGGGCTGCCGCGGTGAGG
GTGGTTACCTGATCAACGGTAATGGTGAGCGCTTCATGGAGCGCTATGCT
CCTGTGGCCAAGGATCTGGCCTCTCGCGACGTCGTCTCGCGGTCGATGAC
CATCGAGATCATGGAGGGTCGTGGCGCTGGACCCGAGAAGGATCACGTGT
ACCTGCAACTGCACCACTTGCCGCCCAAGCAGCTCGCGGAGCGTCTGCCT
GGCATCTCCGAGACCGCCATGATCTTCGCCGGTGTTGATGTGACCCGTGA
GCCCATCCCCGTGTTGCCCACCGTGCATTACAACATGGGCGGTGTGCCGA
CTAACTATCGCGGCCAGGTAATCACCATTGACAAGGATGGCAAGGATGTG
ATTGTGCCGGGACTGTATGCCGCTGGTGAGGCTGCTTCCAGCTCGGTGCA
TGGTGCCAACCGTCTGGGTGCCAACTCTCTGCTGGATCTGGTGGTCTTCG
GACGTGCATGCGCCAAGACCATCGCCGAGCTGAATAAGCCTGGTGCACCG
GCTCCCACCCTCAAGGAAAACGCTGGCGAGGCCTCTGTTGCTAACCTCGA
TAAGCTGCGCCATGCCAACGGCCAGATCACCACCGCCGATCTGCGTCTGA
AGATGCAGAAGACCATGCAGCATCATGCTGCTGTGTTCCGCGATGGCCCC
ATCCTGCAGGACGGTGTGAACAAGATGAAGGAGATCTACAAGCAGTTCAA
GGACATCAAGGTTGTCGATAGGTCGCTTATCTGGAACTCCGATCTGGTGG
AGACGCTGGAGCTGCAGAATCTGTTGGCCAATGCCCAGATGACTATTGTG
AGCGCTGAGGCGCGCAAGGAATCGCGAGGTGCCCACGCCCGCGAGGACTT
CAAGGTTCGCGAGGATGAATACGATTTCAGCAAGCCCCTGGATGGTCAGC
AGAAGAAGCCCATGGATCAGCACTGGCGCAAGCACACGCTCTCGTGGGTG
TGCAATGACAACGGAGACATTACGCTGGACTACAGAAACGTGATCGATAC
CACGCTGGACAACGAAGTCTCTACTGTTCCACCAGCGATTCGCTCCTATG
CAAGCTTTCTAGACCAT

BO07971.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:42:23
Subject Length Description Subject Range Query Range Score Percent Strand
SdhA-RA 1986 CG17246-PA 1..1983 17..1999 9915 100 Plus
SdhA-RC 1986 CG17246-PC 1..1983 17..1999 9915 100 Plus
SdhA-RB 1986 CG17246-PB 1..1983 17..1999 9915 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
SdhA-RA 2750 CG17246-RA 227..2211 15..1999 9925 100 Plus
SdhA-RC 2663 CG17246-RC 140..2124 15..1999 9925 100 Plus
SdhA-RB 2617 CG17246-RB 94..2078 15..1999 9925 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:42:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19392844..19394444 1673..73 8005 100 Minus
2R 25286936 2R 19392402..19392578 1999..1823 885 100 Minus
2R 25286936 2R 19392638..19392791 1823..1670 770 100 Minus
3L 28110227 3L 11923681..11924551 1057..193 540 71.1 Minus
2R 25286936 2R 19395687..19395745 73..15 295 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:42:22 has no hits.

BO07971.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:20 Download gff for BO07971.complete
Subject Subject Range Query Range Percent Splice Strand
Scs-fp-RA 1..1986 17..2003 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:28:47 Download gff for BO07971.complete
Subject Subject Range Query Range Percent Splice Strand
Scs-fp-RA 194..2176 17..2001 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:40 Download gff for BO07971.complete
Subject Subject Range Query Range Percent Splice Strand
SdhA-RB 96..2078 17..2001 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:20 Download gff for BO07971.complete
Subject Subject Range Query Range Percent Splice Strand
Scs-fp-RA 185..2179 9..2003 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:05 Download gff for BO07971.complete
Subject Subject Range Query Range Percent Splice Strand
SdhA-RB 96..2078 17..2001 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:05 Download gff for BO07971.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19392400..19392578 1823..2001 98 <- Minus
2R 19392639..19392789 1672..1822 100 <- Minus
2R 19392846..19394443 74..1671 100 <- Minus
2R 19395687..19395743 17..73 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:40 Download gff for BO07971.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15279905..15280083 1823..2001 98 <- Minus
arm_2R 15280144..15280294 1672..1822 100 <- Minus
arm_2R 15280351..15281948 74..1671 100 <- Minus
arm_2R 15283192..15283248 17..73 100   Minus

BO07971.pep Sequence

Translation from 16 to 2017

> BO07971.pep
MSGIMRVPSILAKNAVASMQRAAAVGVQRSYHITHGRQQASAANPDKISK
QYPVVDHAYDAIVVGAGGAGLRAAFGLVAEGFRTAVITKLFPTRSHTIAA
QGGINAALGNMEEDDWKWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIEL
ENYGMPFSRTQDGKIYQRAFGGQSLKFGKGGQAHRCCAVADRTGHSLLHT
LYGQSLSYDCNYFVEYFALDLIFEDGECRGVLALNLEDGTLHRFRAKNTV
IATGGYGRAFFSCTSAHTCTGDGTAMVARQGLPSQDLEFVQFHPTGIYGA
GCLITEGCRGEGGYLINGNGERFMERYAPVAKDLASRDVVSRSMTIEIME
GRGAGPEKDHVYLQLHHLPPKQLAERLPGISETAMIFAGVDVTREPIPVL
PTVHYNMGGVPTNYRGQVITIDKDGKDVIVPGLYAAGEAASSSVHGANRL
GANSLLDLVVFGRACAKTIAELNKPGAPAPTLKENAGEASVANLDKLRHA
NGQITTADLRLKMQKTMQHHAAVFRDGPILQDGVNKMKEIYKQFKDIKVV
DRSLIWNSDLVETLELQNLLANAQMTIVSAEARKESRGAHAREDFKVRED
EYDFSKPLDGQQKKPMDQHWRKHTLSWVCNDNGDITLDYRNVIDTTLDNE
VSTVPPAIRSYASFLDH

BO07971.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
SdhA-PA 661 CG17246-PA 1..661 1..661 3468 100 Plus
SdhA-PC 661 CG17246-PC 1..661 1..661 3468 100 Plus
SdhA-PB 661 CG17246-PB 1..661 1..661 3468 100 Plus
CG5718-PA 651 CG5718-PA 27..651 39..661 2182 63.7 Plus