Clone Sequence Records
BO07971.3prime Sequence
940 bp (793 high quality bases) assembled on 2006-01-06
> BO07971.3prime
ATGGTCTAGAAAGCTTGCATAGGAGCGAATCGCTGGTGGAACAGTAGAGA
CTTCGTTGTCCAGCGTGGTATCGATCACGTTTCTGTAGTCCAGCGTAATG
TCTCCGTTGTCATTGCACACCCACGAGAGCGTGTGCTTGCGCCAGTGCTG
ATCCATGGGCTTCTTCTGCTGACCATCCAGGGGCTTGCTGAAATCGTATT
CATCCTCGCGAACCTTGAAGTCCTCGCGGGCGTGGGCACCTCGCGATTCC
TTGCGCGCCTCAGCGCTCACAATAGTCATCTGGGCATTGGCCAACAGATT
CTGCAGCTCCAGCGTCTCCACCAGATCGGAGTTCCAGATAAGCGACCTAT
CGACAACCTTGATGTCCTTGAACTGCTTGTAGATCTCCTTCATCTTGTTC
ACACCGTCCTGCAGGATGGGGCCATCGCGGAACACAGCAGCATGATGCTG
CATGGTCTTCTGCATCTTCAGACGCAGATCGGCGGTGGTGATCTGGCCGT
TGGCATGGCGCAGCTTATCGAGGTTAGCAACAGAGGCCTCGCCAGCGTTT
TCCTTGAGGGTGGGAGCCGGTGCACCAGGCTTATTCAGCTCGGCGATGGT
CTTGGCGCATGCACGTCCGAAGACCACCAGATCCAGCAGAGAGTTGGCAC
CCAGACGGTTGGCACCATGCACCGAGCTGGAAGCAGCCTCACCAGCGGCA
TACAGTCCCGGCACAATCACATCCTTGCCATCCTTGTCAATGGTGATTAC
CTGGCCGCGATAGTTAGTCGGCACACCGCCCATGTTGTAATGCACGGTGG
GCAACACGGGGATGGGCTCACGGGTCACATCAACACCGGCGAAGATCATG
GCGGTCTCGGAGATGCCAGGCAGACGCTCCGCGAGCTGCTTGGGCGGCAA
GTGGTGCAGTTGCAAGTACACGTGATCCTTCTCGGGTCCA
BO07971.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17246-PC | 1986 | Scs-fp-RC | 1062..1983 | 940..19 | 4585 | 99.8 | Minus |
CG17246-PB | 1986 | Scs-fp-RB | 1062..1983 | 940..19 | 4585 | 99.8 | Minus |
CG17246-PA | 1986 | Scs-fp-RA | 1062..1983 | 940..19 | 4585 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:32:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SdhA-RA | 2750 | CG17246-RA | 1290..2211 | 940..19 | 4595 | 99.9 | Minus |
SdhA-RC | 2663 | CG17246-RC | 1203..2124 | 940..19 | 4595 | 99.9 | Minus |
SdhA-RB | 2617 | CG17246-RB | 1157..2078 | 940..19 | 4595 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:32:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19392844..19393439 | 345..940 | 2965 | 99.8 | Plus |
2R | 25286936 | 2R | 19392402..19392578 | 19..195 | 885 | 100 | Plus |
2R | 25286936 | 2R | 19392638..19392791 | 195..348 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:32:36 has no hits.
BO07971.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:34:11 Download gff for
BO07971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17246-PA | 1063..1986 | 15..939 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:22:56 Download gff for
BO07971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17246-PA | 1063..1986 | 15..939 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:13:26 Download gff for
BO07971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SdhA-RB | 1158..2081 | 15..939 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 19:15:23 Download gff for
BO07971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SdhA-RB | 1158..2081 | 15..939 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:15:23 Download gff for
BO07971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19392398..19392578 | 15..195 | 98 | <- | Plus |
2R | 19392639..19392789 | 196..346 | 100 | <- | Plus |
2R | 19392846..19393438 | 347..939 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:13:26 Download gff for
BO07971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15279903..15280083 | 15..195 | 98 | <- | Plus |
arm_2R | 15280144..15280294 | 196..346 | 100 | <- | Plus |
arm_2R | 15280351..15280943 | 347..939 | 99 | | Plus |
BO07971.5prime Sequence
938 bp (868 high quality bases) assembled on 2006-01-06
> BO07971.5prime
GAAGTTATCAGTCGACATGTCCGGAATCATGCGTGTGCCATCGATTTTGG
CCAAAAATGCAGTCGCCTCCATGCAACGTGCCGCAGCCGTTGGAGTGCAG
CGCAGTTACCACATCACACACGGCCGCCAGCAGGCCTCGGCGGCGAATCC
GGACAAGATATCGAAGCAGTACCCGGTGGTGGATCACGCCTACGATGCGA
TCGTCGTGGGAGCAGGAGGAGCCGGCTTGCGGGCGGCTTTTGGCCTGGTG
GCTGAGGGATTTCGCACGGCGGTGATCACCAAGCTTTTCCCCACCCGCTC
GCACACGATCGCCGCCCAGGGCGGTATCAATGCCGCTCTCGGCAACATGG
AGGAGGACGACTGGAAGTGGCACATGTACGACACGGTCAAGGGCTCCGAT
TGGCTGGGCGACCAGGATGCCATCCACTACATGACCCGCGAGGCGCCCAA
GGCTGTCATTGAGCTGGAGAACTACGGCATGCCCTTCTCGCGTACCCAGG
ACGGTAAGATCTACCAGCGCGCCTTCGGTGGACAGAGTCTGAAGTTCGGC
AAGGGCGGACAGGCCCATCGCTGCTGTGCTGTGGCTGATCGTACTGGTCA
CTCGCTGCTGCACACGCTATACGGTCAATCGCTGAGCTACGACTGCAACT
ACTTTGTGGAGTACTTTGCCCTGGATCTGATCTTCGAGGACGGCGAGTGC
CGTGGTGTGCTGGCCCTGAACCTGGAGGATGGCACACTGCACCGATTCCG
CGCTAAGAACACGGTCATTGCCACCGGTGGATATGGACGAGCATTCTTCT
CCTGCACCTCGGCGCACACATGTACCGGTGACGGTACTGCTATGGTTGCA
CGCCAGGGACTGCCCTCTCANGATCTGGAGTTCGTGCAGTTCCATCCTAC
TGGCATCTACGGCGCCGGATGTCTCATCACCGAGGGCT
BO07971.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17246-PC | 1986 | Scs-fp-RC | 1..922 | 17..938 | 4591 | 99.8 | Plus |
CG17246-PB | 1986 | Scs-fp-RB | 1..922 | 17..938 | 4591 | 99.8 | Plus |
CG17246-PA | 1986 | Scs-fp-RA | 1..922 | 17..938 | 4591 | 99.8 | Plus |
CG5718-PA | 1956 | CG5718-RA | 838..890 | 884..936 | 140 | 90.5 | Plus |
CG5718-PA | 1956 | CG5718-RA | 325..356 | 377..408 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:45:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SdhA-RA | 2750 | CG17246-RA | 227..1150 | 15..938 | 4609 | 99.9 | Plus |
SdhA-RC | 2663 | CG17246-RC | 140..1063 | 15..938 | 4609 | 99.9 | Plus |
SdhA-RB | 2617 | CG17246-RB | 94..1017 | 15..938 | 4609 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:45:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19393579..19394444 | 938..73 | 4319 | 99.9 | Minus |
3L | 28110227 | 3L | 11924225..11924551 | 519..193 | 450 | 75.8 | Minus |
2R | 25286936 | 2R | 19395687..19395745 | 73..15 | 295 | 100 | Minus |
3L | 28110227 | 3L | 11923802..11923866 | 936..872 | 205 | 87.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:45:21 has no hits.
BO07971.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:34:12 Download gff for
BO07971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17246-PA | 1..922 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:22:57 Download gff for
BO07971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17246-PA | 1..922 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:10:00 Download gff for
BO07971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SdhA-RB | 87..1017 | 9..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:30:54 Download gff for
BO07971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SdhA-RB | 87..1017 | 9..938 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:30:54 Download gff for
BO07971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19393579..19394443 | 74..938 | 99 | <- | Minus |
2R | 19395687..19395752 | 9..73 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:10:00 Download gff for
BO07971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15281084..15281948 | 74..938 | 99 | <- | Minus |
arm_2R | 15283192..15283257 | 9..73 | 95 | | Minus |
BO07971.complete Sequence
2017 bp assembled on 2006-12-18
GenBank Submission: FJ631002
> BO07971.complete
GAAGTTATCAGTCGACATGTCCGGAATCATGCGTGTGCCATCGATTTTGG
CCAAAAATGCAGTCGCCTCCATGCAACGTGCCGCAGCCGTTGGAGTGCAG
CGCAGTTACCACATCACACACGGCCGCCAGCAGGCCTCGGCGGCGAATCC
GGACAAGATATCGAAGCAGTACCCGGTGGTGGATCACGCCTACGATGCGA
TCGTCGTGGGAGCAGGAGGAGCCGGCTTGCGGGCGGCTTTTGGCCTGGTG
GCTGAGGGATTTCGCACGGCGGTGATCACCAAGCTTTTCCCCACCCGCTC
GCACACGATCGCCGCCCAGGGCGGTATCAATGCCGCTCTCGGCAACATGG
AGGAGGACGACTGGAAGTGGCACATGTACGACACGGTCAAGGGCTCCGAT
TGGCTGGGCGACCAGGATGCCATCCACTACATGACCCGCGAGGCGCCCAA
GGCTGTCATTGAGCTGGAGAACTACGGCATGCCCTTCTCGCGTACCCAGG
ACGGTAAGATCTACCAGCGCGCCTTCGGTGGACAGAGTCTGAAGTTCGGC
AAGGGCGGACAGGCCCATCGCTGCTGTGCTGTGGCTGATCGTACTGGTCA
CTCGCTGCTGCACACGCTATACGGTCAATCGCTGAGCTACGACTGCAACT
ACTTTGTGGAGTACTTTGCCCTGGATCTGATCTTCGAGGACGGCGAGTGC
CGTGGTGTGCTGGCCCTGAACCTGGAGGATGGCACACTGCACCGATTCCG
CGCTAAGAACACGGTCATTGCCACCGGTGGATATGGACGAGCATTCTTCT
CCTGCACCTCGGCGCACACATGTACCGGTGACGGTACTGCTATGGTTGCA
CGCCAGGGACTGCCCTCTCAGGATCTGGAGTTCGTGCAGTTCCATCCTAC
TGGCATCTACGGCGCCGGATGTCTCATCACCGAGGGCTGCCGCGGTGAGG
GTGGTTACCTGATCAACGGTAATGGTGAGCGCTTCATGGAGCGCTATGCT
CCTGTGGCCAAGGATCTGGCCTCTCGCGACGTCGTCTCGCGGTCGATGAC
CATCGAGATCATGGAGGGTCGTGGCGCTGGACCCGAGAAGGATCACGTGT
ACCTGCAACTGCACCACTTGCCGCCCAAGCAGCTCGCGGAGCGTCTGCCT
GGCATCTCCGAGACCGCCATGATCTTCGCCGGTGTTGATGTGACCCGTGA
GCCCATCCCCGTGTTGCCCACCGTGCATTACAACATGGGCGGTGTGCCGA
CTAACTATCGCGGCCAGGTAATCACCATTGACAAGGATGGCAAGGATGTG
ATTGTGCCGGGACTGTATGCCGCTGGTGAGGCTGCTTCCAGCTCGGTGCA
TGGTGCCAACCGTCTGGGTGCCAACTCTCTGCTGGATCTGGTGGTCTTCG
GACGTGCATGCGCCAAGACCATCGCCGAGCTGAATAAGCCTGGTGCACCG
GCTCCCACCCTCAAGGAAAACGCTGGCGAGGCCTCTGTTGCTAACCTCGA
TAAGCTGCGCCATGCCAACGGCCAGATCACCACCGCCGATCTGCGTCTGA
AGATGCAGAAGACCATGCAGCATCATGCTGCTGTGTTCCGCGATGGCCCC
ATCCTGCAGGACGGTGTGAACAAGATGAAGGAGATCTACAAGCAGTTCAA
GGACATCAAGGTTGTCGATAGGTCGCTTATCTGGAACTCCGATCTGGTGG
AGACGCTGGAGCTGCAGAATCTGTTGGCCAATGCCCAGATGACTATTGTG
AGCGCTGAGGCGCGCAAGGAATCGCGAGGTGCCCACGCCCGCGAGGACTT
CAAGGTTCGCGAGGATGAATACGATTTCAGCAAGCCCCTGGATGGTCAGC
AGAAGAAGCCCATGGATCAGCACTGGCGCAAGCACACGCTCTCGTGGGTG
TGCAATGACAACGGAGACATTACGCTGGACTACAGAAACGTGATCGATAC
CACGCTGGACAACGAAGTCTCTACTGTTCCACCAGCGATTCGCTCCTATG
CAAGCTTTCTAGACCAT
BO07971.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:42:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SdhA-RA | 1986 | CG17246-PA | 1..1983 | 17..1999 | 9915 | 100 | Plus |
SdhA-RC | 1986 | CG17246-PC | 1..1983 | 17..1999 | 9915 | 100 | Plus |
SdhA-RB | 1986 | CG17246-PB | 1..1983 | 17..1999 | 9915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:42:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SdhA-RA | 2750 | CG17246-RA | 227..2211 | 15..1999 | 9925 | 100 | Plus |
SdhA-RC | 2663 | CG17246-RC | 140..2124 | 15..1999 | 9925 | 100 | Plus |
SdhA-RB | 2617 | CG17246-RB | 94..2078 | 15..1999 | 9925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:42:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19392844..19394444 | 1673..73 | 8005 | 100 | Minus |
2R | 25286936 | 2R | 19392402..19392578 | 1999..1823 | 885 | 100 | Minus |
2R | 25286936 | 2R | 19392638..19392791 | 1823..1670 | 770 | 100 | Minus |
3L | 28110227 | 3L | 11923681..11924551 | 1057..193 | 540 | 71.1 | Minus |
2R | 25286936 | 2R | 19395687..19395745 | 73..15 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:42:22 has no hits.
BO07971.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:20 Download gff for
BO07971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scs-fp-RA | 1..1986 | 17..2003 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:28:47 Download gff for
BO07971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scs-fp-RA | 194..2176 | 17..2001 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:40 Download gff for
BO07971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SdhA-RB | 96..2078 | 17..2001 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:20 Download gff for
BO07971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scs-fp-RA | 185..2179 | 9..2003 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:05 Download gff for
BO07971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SdhA-RB | 96..2078 | 17..2001 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:05 Download gff for
BO07971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19392400..19392578 | 1823..2001 | 98 | <- | Minus |
2R | 19392639..19392789 | 1672..1822 | 100 | <- | Minus |
2R | 19392846..19394443 | 74..1671 | 100 | <- | Minus |
2R | 19395687..19395743 | 17..73 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:40 Download gff for
BO07971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15279905..15280083 | 1823..2001 | 98 | <- | Minus |
arm_2R | 15280144..15280294 | 1672..1822 | 100 | <- | Minus |
arm_2R | 15280351..15281948 | 74..1671 | 100 | <- | Minus |
arm_2R | 15283192..15283248 | 17..73 | 100 | | Minus |
BO07971.pep Sequence
Translation from 16 to 2017
> BO07971.pep
MSGIMRVPSILAKNAVASMQRAAAVGVQRSYHITHGRQQASAANPDKISK
QYPVVDHAYDAIVVGAGGAGLRAAFGLVAEGFRTAVITKLFPTRSHTIAA
QGGINAALGNMEEDDWKWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIEL
ENYGMPFSRTQDGKIYQRAFGGQSLKFGKGGQAHRCCAVADRTGHSLLHT
LYGQSLSYDCNYFVEYFALDLIFEDGECRGVLALNLEDGTLHRFRAKNTV
IATGGYGRAFFSCTSAHTCTGDGTAMVARQGLPSQDLEFVQFHPTGIYGA
GCLITEGCRGEGGYLINGNGERFMERYAPVAKDLASRDVVSRSMTIEIME
GRGAGPEKDHVYLQLHHLPPKQLAERLPGISETAMIFAGVDVTREPIPVL
PTVHYNMGGVPTNYRGQVITIDKDGKDVIVPGLYAAGEAASSSVHGANRL
GANSLLDLVVFGRACAKTIAELNKPGAPAPTLKENAGEASVANLDKLRHA
NGQITTADLRLKMQKTMQHHAAVFRDGPILQDGVNKMKEIYKQFKDIKVV
DRSLIWNSDLVETLELQNLLANAQMTIVSAEARKESRGAHAREDFKVRED
EYDFSKPLDGQQKKPMDQHWRKHTLSWVCNDNGDITLDYRNVIDTTLDNE
VSTVPPAIRSYASFLDH
BO07971.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:37:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SdhA-PA | 661 | CG17246-PA | 1..661 | 1..661 | 3468 | 100 | Plus |
SdhA-PC | 661 | CG17246-PC | 1..661 | 1..661 | 3468 | 100 | Plus |
SdhA-PB | 661 | CG17246-PB | 1..661 | 1..661 | 3468 | 100 | Plus |
CG5718-PA | 651 | CG5718-PA | 27..651 | 39..661 | 2182 | 63.7 | Plus |