Clone Sequence Records
BO07978.3prime Sequence
883 bp (829 high quality bases) assembled on 2006-01-06
> BO07978.3prime
ATGGTCTAGAAAGCTTGCGATAAAGTGGGAGGCATATTCGTGGGGCATTA
CACCCCGTCGGGGATAAAAGGTGTGGGTGGTGGAGAACTTGAGCAGGTTG
GTTATGTCGCTGGTGTAGATGTCGGCAAAGCGGAAGAGGCGTCTTGAGAA
GTAAGTGGGGTTGTGGTAGGTGCGGAAAACGCTGCCAAACTGCTCGTTGA
ACACGTTCTTCGTTTTGTTGCGCAACTGATCCCGCTCCTCCATCCACTCC
TTTAGGCAGATCTGCGCTGCCTCGCTATCATCGTCCTGGGTGTCCTCGAT
GAGCTGCGTCAGCATTTGCAGCCAGTTGGCGCTCATCTTGAAGTCCTTAC
GATTGAGGGTTTTAATTTCGTGAGCCAGTTCGCTAATAATGGCTCCTGTC
CTCCAGCTGTGCTTCAGAGTAACATCTGCTAGGTCGCTGTACGGATGATC
TCCGAAATAGAGCACAGAGTGACCACGCCAGCCCTTCAGCTCTTGAAGCT
GTCTCACCGAACCCTCGTAGTAGATTTTTCCCTTCTCCAGCTTGAATACC
CGATCCCATAGGTGTGACTGCGTTCGCTCGTCGAATAGCCTTATTGGTCG
AGATTCATCCGTAAAGAACTTTGGTTTGCGGGCCTGCACGATGACCACAT
CGAAGAAATCACGCCAGTTGGCGCCGACCAGAAAGGACATGCCACAGTTT
ACAAACGAGTACGGGCTATTGGTGACTAGAAAGAGATTCTTGCCCGCCTG
CTGCAGCTTCTCGAAGAACTTGACCAGCTTCGGGTTTCGTTCTATGTACT
TCTCAGTGTTCCGCATCACCTTGCCGTGCATAATGGGATGGCAGGAGCCC
ATGGGCGTCCTGGTGTCATGGAAAACAATCTCT
BO07978.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1814-PC | 1389 | CG1814-RC | 522..1386 | 883..19 | 4275 | 99.7 | Minus |
CG1814-PA | 1647 | CG1814-RA | 780..1644 | 883..19 | 4275 | 99.7 | Minus |
CG1814-PB | 1230 | CG1814-RB | 363..1227 | 883..19 | 4275 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:35:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1814-RB | 1880 | CG1814-RB | 856..1720 | 883..19 | 4295 | 99.8 | Minus |
CG1814-RA | 1929 | CG1814-RA | 905..1769 | 883..19 | 4295 | 99.8 | Minus |
CG1814-RC | 1673 | CG1814-RC | 649..1513 | 883..19 | 4295 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:35:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9581485..9581687 | 221..19 | 1015 | 100 | Minus |
2R | 25286936 | 2R | 9580818..9581005 | 700..513 | 940 | 100 | Minus |
2R | 25286936 | 2R | 9580565..9580747 | 883..701 | 885 | 98.9 | Minus |
2R | 25286936 | 2R | 9581266..9581417 | 372..221 | 760 | 100 | Minus |
2R | 25286936 | 2R | 9581064..9581206 | 515..373 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:35:40 has no hits.
BO07978.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:34:19 Download gff for
BO07978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1814-PC | 522..1389 | 18..883 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:23:08 Download gff for
BO07978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1814-PB | 363..1230 | 18..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:37:54 Download gff for
BO07978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1814-RC | 649..1513 | 19..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:39 Download gff for
BO07978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1814-RC | 649..1513 | 19..883 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:39 Download gff for
BO07978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9580565..9580747 | 701..883 | 98 | -> | Minus |
2R | 9580818..9581004 | 514..700 | 100 | -> | Minus |
2R | 9581066..9581206 | 373..513 | 100 | -> | Minus |
2R | 9581266..9581417 | 221..372 | 100 | -> | Minus |
2R | 9581486..9581687 | 19..220 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:37:54 Download gff for
BO07978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5468070..5468252 | 701..883 | 98 | -> | Minus |
arm_2R | 5468323..5468509 | 514..700 | 100 | -> | Minus |
arm_2R | 5468571..5468711 | 373..513 | 100 | -> | Minus |
arm_2R | 5468771..5468922 | 221..372 | 100 | -> | Minus |
arm_2R | 5468991..5469192 | 19..220 | 100 | | Minus |
BO07978.5prime Sequence
971 bp (774 high quality bases) assembled on 2006-01-06
> BO07978.5prime
GAAGTTATCAGTCGACATGCTGGTGAAGAGGTTCCGCTACCCGGAGGACA
TCCTCCAGCTGGAGTACGAACCGAACTTTGCGGTACGCGGCCTGCACTAC
GACGTGGAAAAGGGGCTGCTGGTGAAACTGGACAGTTTCCTGCAGCTACA
GCTGGGCTCGGTATACAGGGGACGTACCAAAGTGGAGGCGGATGAGGTGC
TGAAGCTCTACCACAACCGCCTGCTGCCTATTGCCTACGTGGAGGGGCCG
AACAATAGCTACAGGCATAACACCAACTCCAAAATGGTGCAATTGGCCGA
CCTGTTTTCTGTACCTGAAATGTGCCTGCTGTGCAATGTAATCGAATATT
TTGAACGCAATCGAATCGACTACAATCCAGAGATTGTTTTCCATGACACC
AGGACCGCCATGGGCTCCTGCCATCCCATTATGCACGGCAAGGTGATGCG
GAACACTGAGAAGTACATAGAACGAAACCCGAAGCTGGTCAAGTTCTTCG
AGAAGCTGCAGCAGGCGGGCAAGAATCTCTTTCTAGTCACCAATAGCCCG
TACTCGTTTGTAAACTGTGGCATGTCCTTTCTGGTCGGCGCCAACTGGCG
TGATTTCTTCGATGTGGTCATCGTGCAGGCCCGCAAACCAAAGTTCTTTA
CGGATGAATCTCGACCAATAAGGCTATTCGACGAGCGAACGCAGTCACAC
CTATGGGATCGGGTATTCAAGCTGGAGAAGGGAAAAATCTACTACGAGGG
TTCGGTGAGACAGCTTCAAGAGCTGAAGGGCTGGCGTGGTCACTCTGTGC
TCTATTTCGGAGATCATCCGTACAGCGACCTAGCAGATGTTACTCTGAAG
CACAGCTGGAGGACAGGAGCCATTATTAGCGAACTGGCTCACGAAATTAA
ACCCTCAATCGTANGGACTTCAAGATGAGCGCCAACTGGCTGCAATTGCT
GACGCAGCTCATCGAGGACAC
BO07978.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1814-PC | 1389 | CG1814-RC | 160..1044 | 17..901 | 4425 | 100 | Plus |
CG1814-PA | 1647 | CG1814-RA | 418..1302 | 17..901 | 4425 | 100 | Plus |
CG1814-PB | 1230 | CG1814-RB | 1..885 | 17..901 | 4425 | 100 | Plus |
CG1814-PC | 1389 | CG1814-RC | 1043..1115 | 899..971 | 321 | 97.2 | Plus |
CG1814-PA | 1647 | CG1814-RA | 1301..1373 | 899..971 | 321 | 97.2 | Plus |
CG1814-PB | 1230 | CG1814-RB | 884..956 | 899..971 | 321 | 97.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:07:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1814-RB | 1880 | CG1814-RB | 490..1449 | 13..971 | 4734 | 99.6 | Plus |
CG1814-RA | 1929 | CG1814-RA | 539..1498 | 13..971 | 4734 | 99.6 | Plus |
CG1814-RC | 1673 | CG1814-RC | 283..1242 | 13..971 | 4734 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:07:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9580451..9580747 | 265..561 | 1485 | 100 | Plus |
2R | 25286936 | 2R | 9580114..9580366 | 13..265 | 1250 | 99.6 | Plus |
2R | 25286936 | 2R | 9580818..9581005 | 562..749 | 940 | 100 | Plus |
2R | 25286936 | 2R | 9581064..9581206 | 747..889 | 715 | 100 | Plus |
2R | 25286936 | 2R | 9581276..9581348 | 899..971 | 339 | 97.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:07:32 has no hits.
BO07978.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:34:20 Download gff for
BO07978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1814-PC | 153..1115 | 8..971 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:23:09 Download gff for
BO07978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1814-PB | 1..956 | 17..971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:57:43 Download gff for
BO07978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1814-RC | 280..1242 | 8..971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:10:18 Download gff for
BO07978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1814-RC | 280..1242 | 8..971 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:10:18 Download gff for
BO07978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9580111..9580366 | 8..265 | 98 | -> | Plus |
2R | 9580452..9580747 | 266..561 | 100 | -> | Plus |
2R | 9580818..9581004 | 562..748 | 100 | -> | Plus |
2R | 9581066..9581206 | 749..889 | 100 | -> | Plus |
2R | 9581266..9581348 | 890..971 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:57:43 Download gff for
BO07978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5468571..5468711 | 749..889 | 100 | -> | Plus |
arm_2R | 5467616..5467871 | 8..265 | 98 | -> | Plus |
arm_2R | 5467957..5468252 | 266..561 | 100 | -> | Plus |
arm_2R | 5468323..5468509 | 562..748 | 100 | -> | Plus |
arm_2R | 5468771..5468853 | 890..971 | 96 | | Plus |
BO07978.complete Sequence
1261 bp (1261 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631003
> BO07978.complete
GAAGTTATCAGTCGACATGCTGGTGAAGAGGTTCCGCTACCCGGAGGACA
TCCTCCAGCTGGAGTACGAACCGAACTTTGCGGTACGCGGCCTGCACTAC
GACGTGGAAAAGGGGCTGCTGGTGAAACTGGACAGTTTCCTGCAGCTACA
GCTGGGCTCGGTATACAGGGGACGTACCAAAGTGGAGGCGGATGAGGTGC
TGAAGCTCTACCACAACCGCCTGCTGCCTATTGCCTACGTGGAGGGGCCG
AACAATAGCTACAGGCATAACACCAACTCCAAAATGGTGCAATTGGCCGA
CCTGTTTTCTGTACCTGAAATGTGCCTGCTGTGCAATGTAATCGAATATT
TTGAACGCAATCGAATCGACTACAATCCAGAGATTGTTTTCCATGACACC
AGGACCGCCATGGGCTCCTGCCATCCCATTATGCACGGCAAGGTGATGCG
GAACACTGAGAAGTACATAGAACGAAACCCGAAGCTGGTCAAGTTCTTCG
AGAAGCTGCAGCAGGCGGGCAAGAATCTCTTTCTAGTCACCAATAGCCCG
TACTCGTTTGTAAACTGTGGCATGTCCTTTCTGGTCGGCGCCAACTGGCG
TGATTTCTTCGATGTGGTCATCGTGCAGGCCCGCAAACCAAAGTTCTTTA
CGGATGAATCTCGACCAATAAGGCTATTCGACGAGCGAACGCAGTCACAC
CTATGGGATCGGGTATTCAAGCTGGAGAAGGGAAAAATCTACTACGAGGG
TTCGGTGAGACAGCTTCAAGAGCTGAAGGGCTGGCGTGGTCACTCTGTGC
TCTATTTCGGAGATCATCCGTACAGCGACCTAGCAGATGTTACTCTGAAG
CACAGCTGGAGGACAGGAGCCATTATTAGCGAACTGGCTCACGAAATTAA
AACCCTCAATCGTAAGGACTTCAAGATGAGCGCCAACTGGCTGCAAATGC
TGACGCAGCTCATCGAGGACACCCAGGACGATGATAGCGAGGCAGCGCAG
ATCTGCCTAAAGGAGTGGATGGAGGAGCGGGATCAGTTGCGCAACAAAAC
GAAGAACGTGTTCAACGAGCAGTTTGGCAGCGTTTTCCGCACCTACCACA
ACCCCACTTACTTCTCAAGACGCCTCTTCCGCTTTGCCGACATCTACACC
AGCGACATAACCAACCTGCTCAAGTTCTCCACCACCCACACCTTTTATCC
CCGACGGGGTGTAATGCCCCACGAATATGCCTCCCACTTTATCGCAAGCT
TTCTAGACCAT
BO07978.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:00:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1814-RA | 1647 | CG1814-PA | 414..1644 | 13..1243 | 6140 | 99.9 | Plus |
CG1814-RC | 1389 | CG1814-PC | 156..1386 | 13..1243 | 6140 | 99.9 | Plus |
CG1814-RB | 1230 | CG1814-PB | 1..1227 | 17..1243 | 6135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:00:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1814-RB | 1880 | CG1814-RB | 490..1720 | 13..1243 | 6140 | 99.9 | Plus |
CG1814-RA | 1929 | CG1814-RA | 539..1769 | 13..1243 | 6140 | 99.9 | Plus |
CG1814-RC | 1673 | CG1814-RC | 283..1513 | 13..1243 | 6140 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:00:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9580451..9580747 | 265..561 | 1485 | 100 | Plus |
2R | 25286936 | 2R | 9580114..9580366 | 13..265 | 1250 | 99.6 | Plus |
2R | 25286936 | 2R | 9581485..9581687 | 1041..1243 | 1015 | 100 | Plus |
2R | 25286936 | 2R | 9580818..9581005 | 562..749 | 940 | 100 | Plus |
2R | 25286936 | 2R | 9581266..9581417 | 890..1041 | 760 | 100 | Plus |
2R | 25286936 | 2R | 9581064..9581206 | 747..889 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:00:25 has no hits.
BO07978.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:02 Download gff for
BO07978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1814-RA | 411..1647 | 8..1244 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:24 Download gff for
BO07978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1814-RB | 373..1606 | 8..1243 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:08 Download gff for
BO07978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1814-RC | 287..1513 | 17..1245 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:02 Download gff for
BO07978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1814-RB | 373..1606 | 8..1243 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:36 Download gff for
BO07978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1814-RC | 287..1513 | 17..1245 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:36 Download gff for
BO07978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9580452..9580747 | 266..561 | 100 | -> | Plus |
2R | 9580818..9581004 | 562..748 | 100 | -> | Plus |
2R | 9581066..9581206 | 749..889 | 100 | -> | Plus |
2R | 9581266..9581417 | 890..1041 | 100 | -> | Plus |
2R | 9581486..9581687 | 1042..1245 | 99 | | Plus |
2R | 9580118..9580366 | 17..265 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:08 Download gff for
BO07978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5467623..5467871 | 17..265 | 100 | -> | Plus |
arm_2R | 5467957..5468252 | 266..561 | 100 | -> | Plus |
arm_2R | 5468323..5468509 | 562..748 | 100 | -> | Plus |
arm_2R | 5468571..5468711 | 749..889 | 100 | -> | Plus |
arm_2R | 5468771..5468922 | 890..1041 | 100 | -> | Plus |
arm_2R | 5468991..5469192 | 1042..1245 | 99 | | Plus |
BO07978.pep Sequence
Translation from 16 to 1261
> BO07978.pep
MLVKRFRYPEDILQLEYEPNFAVRGLHYDVEKGLLVKLDSFLQLQLGSVY
RGRTKVEADEVLKLYHNRLLPIAYVEGPNNSYRHNTNSKMVQLADLFSVP
EMCLLCNVIEYFERNRIDYNPEIVFHDTRTAMGSCHPIMHGKVMRNTEKY
IERNPKLVKFFEKLQQAGKNLFLVTNSPYSFVNCGMSFLVGANWRDFFDV
VIVQARKPKFFTDESRPIRLFDERTQSHLWDRVFKLEKGKIYYEGSVRQL
QELKGWRGHSVLYFGDHPYSDLADVTLKHSWRTGAIISELAHEIKTLNRK
DFKMSANWLQMLTQLIEDTQDDDSEAAQICLKEWMEERDQLRNKTKNVFN
EQFGSVFRTYHNPTYFSRRLFRFADIYTSDITNLLKFSTTHTFYPRRGVM
PHEYASHFIASFLDH
BO07978.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:43:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1814-PB | 409 | CG1814-PB | 1..409 | 1..409 | 2182 | 100 | Plus |
CG1814-PA | 548 | CG1814-PA | 140..548 | 1..409 | 2182 | 100 | Plus |
CG1814-PC | 462 | CG1814-PC | 54..462 | 1..409 | 2182 | 100 | Plus |
CG32549-PD | 581 | CG32549-PD | 76..481 | 8..403 | 410 | 27.7 | Plus |
CG32549-PF | 612 | CG32549-PF | 107..512 | 8..403 | 410 | 27.7 | Plus |