Clone BO07978 Report

Search the DGRC for BO07978

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:79
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG1814-RB
Protein status:BO07978.pep: validated not full length
Sequenced Size:1261

Clone Sequence Records

BO07978.3prime Sequence

883 bp (829 high quality bases) assembled on 2006-01-06

> BO07978.3prime
ATGGTCTAGAAAGCTTGCGATAAAGTGGGAGGCATATTCGTGGGGCATTA
CACCCCGTCGGGGATAAAAGGTGTGGGTGGTGGAGAACTTGAGCAGGTTG
GTTATGTCGCTGGTGTAGATGTCGGCAAAGCGGAAGAGGCGTCTTGAGAA
GTAAGTGGGGTTGTGGTAGGTGCGGAAAACGCTGCCAAACTGCTCGTTGA
ACACGTTCTTCGTTTTGTTGCGCAACTGATCCCGCTCCTCCATCCACTCC
TTTAGGCAGATCTGCGCTGCCTCGCTATCATCGTCCTGGGTGTCCTCGAT
GAGCTGCGTCAGCATTTGCAGCCAGTTGGCGCTCATCTTGAAGTCCTTAC
GATTGAGGGTTTTAATTTCGTGAGCCAGTTCGCTAATAATGGCTCCTGTC
CTCCAGCTGTGCTTCAGAGTAACATCTGCTAGGTCGCTGTACGGATGATC
TCCGAAATAGAGCACAGAGTGACCACGCCAGCCCTTCAGCTCTTGAAGCT
GTCTCACCGAACCCTCGTAGTAGATTTTTCCCTTCTCCAGCTTGAATACC
CGATCCCATAGGTGTGACTGCGTTCGCTCGTCGAATAGCCTTATTGGTCG
AGATTCATCCGTAAAGAACTTTGGTTTGCGGGCCTGCACGATGACCACAT
CGAAGAAATCACGCCAGTTGGCGCCGACCAGAAAGGACATGCCACAGTTT
ACAAACGAGTACGGGCTATTGGTGACTAGAAAGAGATTCTTGCCCGCCTG
CTGCAGCTTCTCGAAGAACTTGACCAGCTTCGGGTTTCGTTCTATGTACT
TCTCAGTGTTCCGCATCACCTTGCCGTGCATAATGGGATGGCAGGAGCCC
ATGGGCGTCCTGGTGTCATGGAAAACAATCTCT

BO07978.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG1814-PC 1389 CG1814-RC 522..1386 883..19 4275 99.7 Minus
CG1814-PA 1647 CG1814-RA 780..1644 883..19 4275 99.7 Minus
CG1814-PB 1230 CG1814-RB 363..1227 883..19 4275 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:35:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG1814-RB 1880 CG1814-RB 856..1720 883..19 4295 99.8 Minus
CG1814-RA 1929 CG1814-RA 905..1769 883..19 4295 99.8 Minus
CG1814-RC 1673 CG1814-RC 649..1513 883..19 4295 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:35:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9581485..9581687 221..19 1015 100 Minus
2R 25286936 2R 9580818..9581005 700..513 940 100 Minus
2R 25286936 2R 9580565..9580747 883..701 885 98.9 Minus
2R 25286936 2R 9581266..9581417 372..221 760 100 Minus
2R 25286936 2R 9581064..9581206 515..373 715 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:35:40 has no hits.

BO07978.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:34:19 Download gff for BO07978.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1814-PC 522..1389 18..883 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:23:08 Download gff for BO07978.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1814-PB 363..1230 18..883 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:37:54 Download gff for BO07978.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1814-RC 649..1513 19..883 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:39 Download gff for BO07978.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1814-RC 649..1513 19..883 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:39 Download gff for BO07978.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9580565..9580747 701..883 98 -> Minus
2R 9580818..9581004 514..700 100 -> Minus
2R 9581066..9581206 373..513 100 -> Minus
2R 9581266..9581417 221..372 100 -> Minus
2R 9581486..9581687 19..220 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:37:54 Download gff for BO07978.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5468070..5468252 701..883 98 -> Minus
arm_2R 5468323..5468509 514..700 100 -> Minus
arm_2R 5468571..5468711 373..513 100 -> Minus
arm_2R 5468771..5468922 221..372 100 -> Minus
arm_2R 5468991..5469192 19..220 100   Minus

BO07978.5prime Sequence

971 bp (774 high quality bases) assembled on 2006-01-06

> BO07978.5prime
GAAGTTATCAGTCGACATGCTGGTGAAGAGGTTCCGCTACCCGGAGGACA
TCCTCCAGCTGGAGTACGAACCGAACTTTGCGGTACGCGGCCTGCACTAC
GACGTGGAAAAGGGGCTGCTGGTGAAACTGGACAGTTTCCTGCAGCTACA
GCTGGGCTCGGTATACAGGGGACGTACCAAAGTGGAGGCGGATGAGGTGC
TGAAGCTCTACCACAACCGCCTGCTGCCTATTGCCTACGTGGAGGGGCCG
AACAATAGCTACAGGCATAACACCAACTCCAAAATGGTGCAATTGGCCGA
CCTGTTTTCTGTACCTGAAATGTGCCTGCTGTGCAATGTAATCGAATATT
TTGAACGCAATCGAATCGACTACAATCCAGAGATTGTTTTCCATGACACC
AGGACCGCCATGGGCTCCTGCCATCCCATTATGCACGGCAAGGTGATGCG
GAACACTGAGAAGTACATAGAACGAAACCCGAAGCTGGTCAAGTTCTTCG
AGAAGCTGCAGCAGGCGGGCAAGAATCTCTTTCTAGTCACCAATAGCCCG
TACTCGTTTGTAAACTGTGGCATGTCCTTTCTGGTCGGCGCCAACTGGCG
TGATTTCTTCGATGTGGTCATCGTGCAGGCCCGCAAACCAAAGTTCTTTA
CGGATGAATCTCGACCAATAAGGCTATTCGACGAGCGAACGCAGTCACAC
CTATGGGATCGGGTATTCAAGCTGGAGAAGGGAAAAATCTACTACGAGGG
TTCGGTGAGACAGCTTCAAGAGCTGAAGGGCTGGCGTGGTCACTCTGTGC
TCTATTTCGGAGATCATCCGTACAGCGACCTAGCAGATGTTACTCTGAAG
CACAGCTGGAGGACAGGAGCCATTATTAGCGAACTGGCTCACGAAATTAA
ACCCTCAATCGTANGGACTTCAAGATGAGCGCCAACTGGCTGCAATTGCT
GACGCAGCTCATCGAGGACAC

BO07978.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG1814-PC 1389 CG1814-RC 160..1044 17..901 4425 100 Plus
CG1814-PA 1647 CG1814-RA 418..1302 17..901 4425 100 Plus
CG1814-PB 1230 CG1814-RB 1..885 17..901 4425 100 Plus
CG1814-PC 1389 CG1814-RC 1043..1115 899..971 321 97.2 Plus
CG1814-PA 1647 CG1814-RA 1301..1373 899..971 321 97.2 Plus
CG1814-PB 1230 CG1814-RB 884..956 899..971 321 97.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG1814-RB 1880 CG1814-RB 490..1449 13..971 4734 99.6 Plus
CG1814-RA 1929 CG1814-RA 539..1498 13..971 4734 99.6 Plus
CG1814-RC 1673 CG1814-RC 283..1242 13..971 4734 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:07:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9580451..9580747 265..561 1485 100 Plus
2R 25286936 2R 9580114..9580366 13..265 1250 99.6 Plus
2R 25286936 2R 9580818..9581005 562..749 940 100 Plus
2R 25286936 2R 9581064..9581206 747..889 715 100 Plus
2R 25286936 2R 9581276..9581348 899..971 339 97.3 Plus
Blast to na_te.dros performed on 2015-02-11 04:07:32 has no hits.

BO07978.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:34:20 Download gff for BO07978.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1814-PC 153..1115 8..971 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:23:09 Download gff for BO07978.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1814-PB 1..956 17..971 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:57:43 Download gff for BO07978.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1814-RC 280..1242 8..971 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:10:18 Download gff for BO07978.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1814-RC 280..1242 8..971 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:10:18 Download gff for BO07978.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9580111..9580366 8..265 98 -> Plus
2R 9580452..9580747 266..561 100 -> Plus
2R 9580818..9581004 562..748 100 -> Plus
2R 9581066..9581206 749..889 100 -> Plus
2R 9581266..9581348 890..971 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:57:43 Download gff for BO07978.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5468571..5468711 749..889 100 -> Plus
arm_2R 5467616..5467871 8..265 98 -> Plus
arm_2R 5467957..5468252 266..561 100 -> Plus
arm_2R 5468323..5468509 562..748 100 -> Plus
arm_2R 5468771..5468853 890..971 96   Plus

BO07978.complete Sequence

1261 bp (1261 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631003

> BO07978.complete
GAAGTTATCAGTCGACATGCTGGTGAAGAGGTTCCGCTACCCGGAGGACA
TCCTCCAGCTGGAGTACGAACCGAACTTTGCGGTACGCGGCCTGCACTAC
GACGTGGAAAAGGGGCTGCTGGTGAAACTGGACAGTTTCCTGCAGCTACA
GCTGGGCTCGGTATACAGGGGACGTACCAAAGTGGAGGCGGATGAGGTGC
TGAAGCTCTACCACAACCGCCTGCTGCCTATTGCCTACGTGGAGGGGCCG
AACAATAGCTACAGGCATAACACCAACTCCAAAATGGTGCAATTGGCCGA
CCTGTTTTCTGTACCTGAAATGTGCCTGCTGTGCAATGTAATCGAATATT
TTGAACGCAATCGAATCGACTACAATCCAGAGATTGTTTTCCATGACACC
AGGACCGCCATGGGCTCCTGCCATCCCATTATGCACGGCAAGGTGATGCG
GAACACTGAGAAGTACATAGAACGAAACCCGAAGCTGGTCAAGTTCTTCG
AGAAGCTGCAGCAGGCGGGCAAGAATCTCTTTCTAGTCACCAATAGCCCG
TACTCGTTTGTAAACTGTGGCATGTCCTTTCTGGTCGGCGCCAACTGGCG
TGATTTCTTCGATGTGGTCATCGTGCAGGCCCGCAAACCAAAGTTCTTTA
CGGATGAATCTCGACCAATAAGGCTATTCGACGAGCGAACGCAGTCACAC
CTATGGGATCGGGTATTCAAGCTGGAGAAGGGAAAAATCTACTACGAGGG
TTCGGTGAGACAGCTTCAAGAGCTGAAGGGCTGGCGTGGTCACTCTGTGC
TCTATTTCGGAGATCATCCGTACAGCGACCTAGCAGATGTTACTCTGAAG
CACAGCTGGAGGACAGGAGCCATTATTAGCGAACTGGCTCACGAAATTAA
AACCCTCAATCGTAAGGACTTCAAGATGAGCGCCAACTGGCTGCAAATGC
TGACGCAGCTCATCGAGGACACCCAGGACGATGATAGCGAGGCAGCGCAG
ATCTGCCTAAAGGAGTGGATGGAGGAGCGGGATCAGTTGCGCAACAAAAC
GAAGAACGTGTTCAACGAGCAGTTTGGCAGCGTTTTCCGCACCTACCACA
ACCCCACTTACTTCTCAAGACGCCTCTTCCGCTTTGCCGACATCTACACC
AGCGACATAACCAACCTGCTCAAGTTCTCCACCACCCACACCTTTTATCC
CCGACGGGGTGTAATGCCCCACGAATATGCCTCCCACTTTATCGCAAGCT
TTCTAGACCAT

BO07978.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:00:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1814-RA 1647 CG1814-PA 414..1644 13..1243 6140 99.9 Plus
CG1814-RC 1389 CG1814-PC 156..1386 13..1243 6140 99.9 Plus
CG1814-RB 1230 CG1814-PB 1..1227 17..1243 6135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:00:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG1814-RB 1880 CG1814-RB 490..1720 13..1243 6140 99.9 Plus
CG1814-RA 1929 CG1814-RA 539..1769 13..1243 6140 99.9 Plus
CG1814-RC 1673 CG1814-RC 283..1513 13..1243 6140 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:00:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9580451..9580747 265..561 1485 100 Plus
2R 25286936 2R 9580114..9580366 13..265 1250 99.6 Plus
2R 25286936 2R 9581485..9581687 1041..1243 1015 100 Plus
2R 25286936 2R 9580818..9581005 562..749 940 100 Plus
2R 25286936 2R 9581266..9581417 890..1041 760 100 Plus
2R 25286936 2R 9581064..9581206 747..889 715 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:00:25 has no hits.

BO07978.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:02 Download gff for BO07978.complete
Subject Subject Range Query Range Percent Splice Strand
CG1814-RA 411..1647 8..1244 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:24 Download gff for BO07978.complete
Subject Subject Range Query Range Percent Splice Strand
CG1814-RB 373..1606 8..1243 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:08 Download gff for BO07978.complete
Subject Subject Range Query Range Percent Splice Strand
CG1814-RC 287..1513 17..1245 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:02 Download gff for BO07978.complete
Subject Subject Range Query Range Percent Splice Strand
CG1814-RB 373..1606 8..1243 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:36 Download gff for BO07978.complete
Subject Subject Range Query Range Percent Splice Strand
CG1814-RC 287..1513 17..1245 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:36 Download gff for BO07978.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9580452..9580747 266..561 100 -> Plus
2R 9580818..9581004 562..748 100 -> Plus
2R 9581066..9581206 749..889 100 -> Plus
2R 9581266..9581417 890..1041 100 -> Plus
2R 9581486..9581687 1042..1245 99   Plus
2R 9580118..9580366 17..265 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:08 Download gff for BO07978.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5467623..5467871 17..265 100 -> Plus
arm_2R 5467957..5468252 266..561 100 -> Plus
arm_2R 5468323..5468509 562..748 100 -> Plus
arm_2R 5468571..5468711 749..889 100 -> Plus
arm_2R 5468771..5468922 890..1041 100 -> Plus
arm_2R 5468991..5469192 1042..1245 99   Plus

BO07978.pep Sequence

Translation from 16 to 1261

> BO07978.pep
MLVKRFRYPEDILQLEYEPNFAVRGLHYDVEKGLLVKLDSFLQLQLGSVY
RGRTKVEADEVLKLYHNRLLPIAYVEGPNNSYRHNTNSKMVQLADLFSVP
EMCLLCNVIEYFERNRIDYNPEIVFHDTRTAMGSCHPIMHGKVMRNTEKY
IERNPKLVKFFEKLQQAGKNLFLVTNSPYSFVNCGMSFLVGANWRDFFDV
VIVQARKPKFFTDESRPIRLFDERTQSHLWDRVFKLEKGKIYYEGSVRQL
QELKGWRGHSVLYFGDHPYSDLADVTLKHSWRTGAIISELAHEIKTLNRK
DFKMSANWLQMLTQLIEDTQDDDSEAAQICLKEWMEERDQLRNKTKNVFN
EQFGSVFRTYHNPTYFSRRLFRFADIYTSDITNLLKFSTTHTFYPRRGVM
PHEYASHFIASFLDH

BO07978.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG1814-PB 409 CG1814-PB 1..409 1..409 2182 100 Plus
CG1814-PA 548 CG1814-PA 140..548 1..409 2182 100 Plus
CG1814-PC 462 CG1814-PC 54..462 1..409 2182 100 Plus
CG32549-PD 581 CG32549-PD 76..481 8..403 410 27.7 Plus
CG32549-PF 612 CG32549-PF 107..512 8..403 410 27.7 Plus