Clone Sequence Records
BO07980.3prime Sequence
840 bp (796 high quality bases) assembled on 2006-01-06
> BO07980.3prime
ATGGTCTAGAAAGCTTGCAGCCGCCAGTAGCGATTTTCCGTTGGTCTCCT
CCAGAAAAAAGCAGAAGTAGAGAAACGAGAAAAACGTAATTCCGCTACAG
CTCCACATGGTAACCGAGGTGCCCCAAACAGCCATACAGATGGGAAAGAT
TTTCAGTGTGAGAAATACTGTACTGCTTAGGATCACCACAAAGGTGGAGA
CGCTCACAGATCGAATCTTGGCCGGAAAGAGCTCGACGAGCACAACGAAT
AGGCATCCCACCAAGCCGATGTTGCAGAGGAATACGAAGCAGGACAAGAT
CACAAGGGGTAACCAGTCAACCGAAGAGAGATCAGCCGCCTCGGCGAAGA
AGGTGAAGGTGCCGAAGGCAGTTAGGCAAACGGAGGCTCCCAAGGTGGAG
GTCAGCATGAGTATCCTCCTTCCGTACTTATCGCACAACAGAGTGGTCAC
GTAGTTGCCCACGATCTGGAGCACTCCGATGATGATGGTGCACATGCCCA
GATTCAGAGTTGTGTGGGATGCGGCAAAGACGTCCGCCAAGTAGGTGGTC
ACACAAAAACTGGCACTGAATTGATTGCTAATAAGCAGGACAGCGGCAGA
AGCGTAGGCCTTAAATGCAGGTCTGGTTATGAAATCTCTGTAGTCGAAGG
ACTTGGCCTTCTCCGTCTGCTCCTTAATAAGGAGATACTTCATCTCTTCG
AACTCGTCCTCAGCCTTGATGTCATTTTTCCTGATGTTTTTGTAGAACAT
GAACGACCTCTTGGCCGCTTCGAATTTTCCCTTGCGAACTAGGTGATGTG
GGGTTTCCGGAATGAGGGAGTTGCAGATAAAATAACAGAC
BO07980.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3285-PA | 1401 | CG3285-RA | 577..1398 | 840..19 | 4085 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:05:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3285-RB | 1595 | CG3285-RB | 612..1433 | 840..19 | 4095 | 99.9 | Minus |
CG3285-RA | 1631 | CG3285-RA | 612..1433 | 840..19 | 4095 | 99.9 | Minus |
CG15408-RA | 1565 | CG15408-RA | 1021..1110 | 493..404 | 195 | 81.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:05:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3332003..3332415 | 629..217 | 2065 | 100 | Minus |
2L | 23513712 | 2L | 3331733..3331943 | 840..630 | 1040 | 99.5 | Minus |
2L | 23513712 | 2L | 3332479..3332678 | 218..19 | 1000 | 100 | Minus |
2L | 23513712 | 2L | 3334178..3334267 | 493..404 | 195 | 81.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:05:09 has no hits.
BO07980.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:34:24 Download gff for
BO07980.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3285-PA | 577..1401 | 18..840 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:23:13 Download gff for
BO07980.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3285-PA | 577..1401 | 18..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:47:07 Download gff for
BO07980.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3285-RA | 612..1439 | 10..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:00:21 Download gff for
BO07980.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3285-RA | 612..1439 | 10..840 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:00:21 Download gff for
BO07980.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3331733..3331943 | 630..840 | 99 | -> | Minus |
2L | 3332003..3332415 | 217..629 | 100 | -> | Minus |
2L | 3332481..3332680 | 14..216 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:47:07 Download gff for
BO07980.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3331733..3331943 | 630..840 | 99 | -> | Minus |
arm_2L | 3332003..3332415 | 217..629 | 100 | -> | Minus |
arm_2L | 3332481..3332680 | 14..216 | 98 | -> | Minus |
BO07980.5prime Sequence
937 bp (795 high quality bases) assembled on 2006-01-06
> BO07980.5prime
GAAGTTATCAGTCGACATGACGTTCAAATTGCGCTTAGCCTCGGTCTTCG
CCAATCCGAATTGTCTATTGGGACGCAGGATTCGCCACCAGTTTCTGGTC
ACCCTGCTGCTGAACATAGCTACCTTCTCCCATGGCCTGGGCGTGGGTTG
GATGTCGCCGGTGATGAGGGACCTGCAGACCGATGAGTCGCCCCTTGATT
TTCCCGTCCTCGTGAGCCAGGTGTCCTGGATCGGATCGCTCGTGGGCATT
GGCAGTGTGATGGGCAATCTGATCGCCGGATTACTCATGGATCGCATTGG
TCGCAAGATGGTCCTTTTCTTCATTGCGATTCCCTATACGACCTTTTGGT
GCCTGATTTACTTCGTCCAAAGTGTGGAGTTCCTGTACATCGGACGACTG
ATGGCCGGCATAACTGGTGGTGCCTGCTACGTCGTCCTTCCGACCTTCAT
AAGCGAAATCGCCGACACCAATGTTCGCGGTCGCCTAGGCTCCATTATCT
TACTATCGGTGAACACGGGTGTTTTGGCGGGCTATATAGTGTCCACGAGA
GTGGATTACTTTACGTCTCCCCCGTTCATCATCGGGCTGCCCGTCTGTTA
TTTTATCTGCAACTTCCTCATTCCGGAAACCCCACATCACCTAGTTCGCA
AGGGAAAATTCGAAGCGGCCAAGAGGTCGTTCATGTTCTACAAAAACATC
AGGAAAAATGACATCAAGGCTGAGGACGAGTTCGAAGAGATGAAGTATCT
CCTTATTAAGGAGCAGACGGAGAAGGCCAAGTCCTTCGACTACAGAGATT
TCATAACCAGACCTGCATTTAAGGCCTACGCTTCTGCCGCTGTCCTGCTT
ATTAGCAATCAATTCAGTGCCAGTTTTTGTGTGACCACCTACTTGGCGGA
CGTCTTTGCCGCATCCCACACAACTCTGAATCTGGGC
BO07980.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3285-PA | 1401 | CG3285-RA | 1..921 | 17..937 | 4605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:46:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3285-RB | 1595 | CG3285-RB | 35..956 | 16..937 | 4610 | 100 | Plus |
CG3285-RA | 1631 | CG3285-RA | 35..956 | 16..937 | 4610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:46:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3331612..3331943 | 472..803 | 1660 | 100 | Plus |
2L | 23513712 | 2L | 3331118..3331347 | 111..340 | 1150 | 100 | Plus |
2L | 23513712 | 2L | 3332003..3332136 | 804..937 | 670 | 100 | Plus |
2L | 23513712 | 2L | 3331413..3331544 | 340..471 | 660 | 100 | Plus |
2L | 23513712 | 2L | 3330962..3331056 | 16..110 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:46:42 has no hits.
BO07980.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:34:25 Download gff for
BO07980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3285-PA | 1..921 | 17..937 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:23:14 Download gff for
BO07980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3285-PA | 1..921 | 17..937 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:10:04 Download gff for
BO07980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3285-RA | 23..956 | 2..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:31:04 Download gff for
BO07980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3285-RA | 23..956 | 2..937 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:04 Download gff for
BO07980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3330950..3331056 | 2..110 | 95 | -> | Plus |
2L | 3331118..3331347 | 111..340 | 100 | -> | Plus |
2L | 3331414..3331544 | 341..471 | 100 | -> | Plus |
2L | 3331612..3331943 | 472..803 | 100 | -> | Plus |
2L | 3332003..3332136 | 804..937 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:10:04 Download gff for
BO07980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3330950..3331056 | 2..110 | 95 | -> | Plus |
arm_2L | 3331118..3331347 | 111..340 | 100 | -> | Plus |
arm_2L | 3331414..3331544 | 341..471 | 100 | -> | Plus |
arm_2L | 3331612..3331943 | 472..803 | 100 | -> | Plus |
arm_2L | 3332003..3332136 | 804..937 | 100 | | Plus |
BO07980.complete Sequence
1432 bp (1432 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631004
> BO07980.complete
GAAGTTATCAGTCGACATGACGTTCAAATTGCGCTTAGCCTCGGTCTTCG
CCAATCCGAATTGTCTATTGGGACGCAGGATTCGCCACCAGTTTCTGGTC
ACCCTGCTGCTGAACATAGCTACCTTCTCCCATGGCCTGGGCGTGGGTTG
GATGTCGCCGGTGATGAGGGACCTGCAGACCGATGAGTCGCCCCTTGATT
TTCCCGTCCTCGTGAGCCAGGTGTCCTGGATCGGATCGCTCGTGGGCATT
GGCAGTGTGATGGGCAATCTGATCGCCGGATTACTCATGGATCGCATTGG
TCGCAAGATGGTCCTTTTCTTCATTGCGATTCCCTATACGACCTTTTGGT
GCCTGATTTACTTCGTCCAAAGTGTGGAGTTCCTGTACATCGGACGACTG
ATGGCCGGCATAACTGGTGGTGCCTGCTACGTCGTCCTTCCGACCTTCAT
AAGCGAAATCGCCGACACCAATGTTCGCGGTCGCCTAGGCTCCATTATCT
TACTATCGGTGAACACGGGTGTTTTGGCGGGCTATATAGTGTCCACGAGA
GTGGATTACTTTACGTCTCCCCCGTTCATCATCGGGCTGCCCGTCTGTTA
TTTTATCTGCAACTTCCTCATTCCGGAAACCCCACATCACCTAGTTCGCA
AGGGAAAATTCGAAGCGGCCAAGAGGTCGTTCATGTTCTACAAAAACATC
AGGAAAAATGACATCAAGGCTGAGGACGAGTTCGAAGAGATGAAGTATCT
CCTTATTAAGGAGCAGACGGAGAAGGCCAAGTCCTTCGACTACAGAGATT
TCATAACCAGACCTGCATTTAAGGCCTACGCTTCTGCCGCTGTCCTGCTT
ATTAGCAATCAATTCAGTGCCAGTTTTTGTGTGACCACCTACTTGGCGGA
CGTCTTTGCCGCATCCCACACAACTCTGAATCTGGGCATGTGCACCATCA
TCATCGGAGTGCTCCAGATCGTGGGCAACTACGTGACCACTCTGTTGTGC
GATAAGTACGGAAGGAGGATACTCATGCTGACCTCCACCTTGGGAGCCTC
CGTTTGCCTAACTGCCTTCGGCACCTTCACCTTCTTCGCCGAGGCGGCTG
ATCTCTCTTCGGTTGACTGGTTACCCCTTGTGATCTTGTCCTGCTTCGTA
TTCCTCTGCAACATCGGCTTGGTGGGATGCCTATTCGTTGTGCTCGTCGA
GCTCTTTCCGGCCAAGATTCGATCTGTGAGCGTCTCCACCTTTGTGGTGA
TCCTAAGCAGTACAGTATTTCTCACACTGAAAATCTTTCCCATCTGTATG
GCTGTTTGGGGCACCTCGGTTACCATGTGGAGCTGTAGCGGAATTACGTT
TTTCTCGTTTCTCTACTTCTGCTTTTTTCTGGAGGAGACCAACGGAAAAT
CGCTACTGGCGGCTGCAAGCTTTCTAGACCAT
BO07980.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:04:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3285-RB | 1401 | CG3285-PB | 1..1398 | 17..1414 | 6990 | 100 | Plus |
CG3285-RA | 1401 | CG3285-PA | 1..1398 | 17..1414 | 6990 | 100 | Plus |
CG15408-RA | 1401 | CG15408-PA | 924..1013 | 940..1029 | 195 | 81.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:04:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3285-RB | 1595 | CG3285-RB | 35..1433 | 16..1414 | 6995 | 100 | Plus |
CG3285-RA | 1631 | CG3285-RA | 35..1433 | 16..1414 | 6995 | 100 | Plus |
CG15408-RA | 1565 | CG15408-RA | 1021..1110 | 940..1029 | 195 | 81.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:04:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3332003..3332415 | 804..1216 | 2065 | 100 | Plus |
2L | 23513712 | 2L | 3331612..3331943 | 472..803 | 1660 | 100 | Plus |
2L | 23513712 | 2L | 3331118..3331347 | 111..340 | 1150 | 100 | Plus |
2L | 23513712 | 2L | 3332479..3332678 | 1215..1414 | 1000 | 100 | Plus |
2L | 23513712 | 2L | 3331413..3331544 | 340..471 | 660 | 100 | Plus |
2L | 23513712 | 2L | 3330962..3331056 | 16..110 | 475 | 100 | Plus |
2L | 23513712 | 2L | 3334178..3334267 | 940..1029 | 195 | 81.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:04:25 has no hits.
BO07980.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:47 Download gff for
BO07980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3285-RA | 1..1401 | 17..1415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:06 Download gff for
BO07980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3285-RA | 1..1414 | 9..1423 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:47 Download gff for
BO07980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3285-RA | 36..1433 | 17..1416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:48 Download gff for
BO07980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3285-RA | 1..1414 | 9..1423 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:14:09 Download gff for
BO07980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3285-RA | 36..1433 | 17..1416 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:14:09 Download gff for
BO07980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3330963..3331056 | 17..110 | 100 | -> | Plus |
2L | 3331118..3331347 | 111..340 | 100 | -> | Plus |
2L | 3331414..3331544 | 341..471 | 100 | -> | Plus |
2L | 3331612..3331943 | 472..803 | 100 | -> | Plus |
2L | 3332003..3332415 | 804..1216 | 100 | -> | Plus |
2L | 3332481..3332678 | 1217..1416 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:47 Download gff for
BO07980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3330963..3331056 | 17..110 | 100 | -> | Plus |
arm_2L | 3331118..3331347 | 111..340 | 100 | -> | Plus |
arm_2L | 3331414..3331544 | 341..471 | 100 | -> | Plus |
arm_2L | 3331612..3331943 | 472..803 | 100 | -> | Plus |
arm_2L | 3332003..3332415 | 804..1216 | 100 | -> | Plus |
arm_2L | 3332481..3332678 | 1217..1416 | 99 | | Plus |
BO07980.pep Sequence
Translation from 16 to 1432
> BO07980.pep
MTFKLRLASVFANPNCLLGRRIRHQFLVTLLLNIATFSHGLGVGWMSPVM
RDLQTDESPLDFPVLVSQVSWIGSLVGIGSVMGNLIAGLLMDRIGRKMVL
FFIAIPYTTFWCLIYFVQSVEFLYIGRLMAGITGGACYVVLPTFISEIAD
TNVRGRLGSIILLSVNTGVLAGYIVSTRVDYFTSPPFIIGLPVCYFICNF
LIPETPHHLVRKGKFEAAKRSFMFYKNIRKNDIKAEDEFEEMKYLLIKEQ
TEKAKSFDYRDFITRPAFKAYASAAVLLISNQFSASFCVTTYLADVFAAS
HTTLNLGMCTIIIGVLQIVGNYVTTLLCDKYGRRILMLTSTLGASVCLTA
FGTFTFFAEAADLSSVDWLPLVILSCFVFLCNIGLVGCLFVVLVELFPAK
IRSVSVSTFVVILSSTVFLTLKIFPICMAVWGTSVTMWSCSGITFFSFLY
FCFFLEETNGKSLLAAASFLDH
BO07980.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3285-PB | 466 | CG3285-PB | 1..466 | 1..466 | 2398 | 100 | Plus |
CG3285-PA | 466 | CG3285-PA | 1..466 | 1..466 | 2398 | 100 | Plus |
CG15408-PA | 466 | CG15408-PA | 2..464 | 7..464 | 1250 | 51.6 | Plus |
CG33282-PB | 460 | CG33282-PB | 7..458 | 15..464 | 1120 | 46.5 | Plus |
CG15406-PA | 469 | CG15406-PA | 16..467 | 23..463 | 902 | 39.1 | Plus |