Clone BO07980 Report

Search the DGRC for BO07980

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:79
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG3285-RA
Protein status:BO07980.pep: validated full length
Sequenced Size:1432

Clone Sequence Records

BO07980.3prime Sequence

840 bp (796 high quality bases) assembled on 2006-01-06

> BO07980.3prime
ATGGTCTAGAAAGCTTGCAGCCGCCAGTAGCGATTTTCCGTTGGTCTCCT
CCAGAAAAAAGCAGAAGTAGAGAAACGAGAAAAACGTAATTCCGCTACAG
CTCCACATGGTAACCGAGGTGCCCCAAACAGCCATACAGATGGGAAAGAT
TTTCAGTGTGAGAAATACTGTACTGCTTAGGATCACCACAAAGGTGGAGA
CGCTCACAGATCGAATCTTGGCCGGAAAGAGCTCGACGAGCACAACGAAT
AGGCATCCCACCAAGCCGATGTTGCAGAGGAATACGAAGCAGGACAAGAT
CACAAGGGGTAACCAGTCAACCGAAGAGAGATCAGCCGCCTCGGCGAAGA
AGGTGAAGGTGCCGAAGGCAGTTAGGCAAACGGAGGCTCCCAAGGTGGAG
GTCAGCATGAGTATCCTCCTTCCGTACTTATCGCACAACAGAGTGGTCAC
GTAGTTGCCCACGATCTGGAGCACTCCGATGATGATGGTGCACATGCCCA
GATTCAGAGTTGTGTGGGATGCGGCAAAGACGTCCGCCAAGTAGGTGGTC
ACACAAAAACTGGCACTGAATTGATTGCTAATAAGCAGGACAGCGGCAGA
AGCGTAGGCCTTAAATGCAGGTCTGGTTATGAAATCTCTGTAGTCGAAGG
ACTTGGCCTTCTCCGTCTGCTCCTTAATAAGGAGATACTTCATCTCTTCG
AACTCGTCCTCAGCCTTGATGTCATTTTTCCTGATGTTTTTGTAGAACAT
GAACGACCTCTTGGCCGCTTCGAATTTTCCCTTGCGAACTAGGTGATGTG
GGGTTTCCGGAATGAGGGAGTTGCAGATAAAATAACAGAC

BO07980.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3285-PA 1401 CG3285-RA 577..1398 840..19 4085 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:05:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3285-RB 1595 CG3285-RB 612..1433 840..19 4095 99.9 Minus
CG3285-RA 1631 CG3285-RA 612..1433 840..19 4095 99.9 Minus
CG15408-RA 1565 CG15408-RA 1021..1110 493..404 195 81.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:05:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3332003..3332415 629..217 2065 100 Minus
2L 23513712 2L 3331733..3331943 840..630 1040 99.5 Minus
2L 23513712 2L 3332479..3332678 218..19 1000 100 Minus
2L 23513712 2L 3334178..3334267 493..404 195 81.1 Minus
Blast to na_te.dros performed on 2015-02-11 22:05:09 has no hits.

BO07980.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:34:24 Download gff for BO07980.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3285-PA 577..1401 18..840 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:23:13 Download gff for BO07980.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3285-PA 577..1401 18..840 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:47:07 Download gff for BO07980.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3285-RA 612..1439 10..840 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:00:21 Download gff for BO07980.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3285-RA 612..1439 10..840 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:00:21 Download gff for BO07980.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3331733..3331943 630..840 99 -> Minus
2L 3332003..3332415 217..629 100 -> Minus
2L 3332481..3332680 14..216 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:47:07 Download gff for BO07980.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3331733..3331943 630..840 99 -> Minus
arm_2L 3332003..3332415 217..629 100 -> Minus
arm_2L 3332481..3332680 14..216 98 -> Minus

BO07980.5prime Sequence

937 bp (795 high quality bases) assembled on 2006-01-06

> BO07980.5prime
GAAGTTATCAGTCGACATGACGTTCAAATTGCGCTTAGCCTCGGTCTTCG
CCAATCCGAATTGTCTATTGGGACGCAGGATTCGCCACCAGTTTCTGGTC
ACCCTGCTGCTGAACATAGCTACCTTCTCCCATGGCCTGGGCGTGGGTTG
GATGTCGCCGGTGATGAGGGACCTGCAGACCGATGAGTCGCCCCTTGATT
TTCCCGTCCTCGTGAGCCAGGTGTCCTGGATCGGATCGCTCGTGGGCATT
GGCAGTGTGATGGGCAATCTGATCGCCGGATTACTCATGGATCGCATTGG
TCGCAAGATGGTCCTTTTCTTCATTGCGATTCCCTATACGACCTTTTGGT
GCCTGATTTACTTCGTCCAAAGTGTGGAGTTCCTGTACATCGGACGACTG
ATGGCCGGCATAACTGGTGGTGCCTGCTACGTCGTCCTTCCGACCTTCAT
AAGCGAAATCGCCGACACCAATGTTCGCGGTCGCCTAGGCTCCATTATCT
TACTATCGGTGAACACGGGTGTTTTGGCGGGCTATATAGTGTCCACGAGA
GTGGATTACTTTACGTCTCCCCCGTTCATCATCGGGCTGCCCGTCTGTTA
TTTTATCTGCAACTTCCTCATTCCGGAAACCCCACATCACCTAGTTCGCA
AGGGAAAATTCGAAGCGGCCAAGAGGTCGTTCATGTTCTACAAAAACATC
AGGAAAAATGACATCAAGGCTGAGGACGAGTTCGAAGAGATGAAGTATCT
CCTTATTAAGGAGCAGACGGAGAAGGCCAAGTCCTTCGACTACAGAGATT
TCATAACCAGACCTGCATTTAAGGCCTACGCTTCTGCCGCTGTCCTGCTT
ATTAGCAATCAATTCAGTGCCAGTTTTTGTGTGACCACCTACTTGGCGGA
CGTCTTTGCCGCATCCCACACAACTCTGAATCTGGGC

BO07980.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3285-PA 1401 CG3285-RA 1..921 17..937 4605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG3285-RB 1595 CG3285-RB 35..956 16..937 4610 100 Plus
CG3285-RA 1631 CG3285-RA 35..956 16..937 4610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3331612..3331943 472..803 1660 100 Plus
2L 23513712 2L 3331118..3331347 111..340 1150 100 Plus
2L 23513712 2L 3332003..3332136 804..937 670 100 Plus
2L 23513712 2L 3331413..3331544 340..471 660 100 Plus
2L 23513712 2L 3330962..3331056 16..110 475 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:46:42 has no hits.

BO07980.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:34:25 Download gff for BO07980.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3285-PA 1..921 17..937 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:23:14 Download gff for BO07980.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3285-PA 1..921 17..937 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:10:04 Download gff for BO07980.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3285-RA 23..956 2..937 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:31:04 Download gff for BO07980.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3285-RA 23..956 2..937 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:04 Download gff for BO07980.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3330950..3331056 2..110 95 -> Plus
2L 3331118..3331347 111..340 100 -> Plus
2L 3331414..3331544 341..471 100 -> Plus
2L 3331612..3331943 472..803 100 -> Plus
2L 3332003..3332136 804..937 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:10:04 Download gff for BO07980.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3330950..3331056 2..110 95 -> Plus
arm_2L 3331118..3331347 111..340 100 -> Plus
arm_2L 3331414..3331544 341..471 100 -> Plus
arm_2L 3331612..3331943 472..803 100 -> Plus
arm_2L 3332003..3332136 804..937 100   Plus

BO07980.complete Sequence

1432 bp (1432 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631004

> BO07980.complete
GAAGTTATCAGTCGACATGACGTTCAAATTGCGCTTAGCCTCGGTCTTCG
CCAATCCGAATTGTCTATTGGGACGCAGGATTCGCCACCAGTTTCTGGTC
ACCCTGCTGCTGAACATAGCTACCTTCTCCCATGGCCTGGGCGTGGGTTG
GATGTCGCCGGTGATGAGGGACCTGCAGACCGATGAGTCGCCCCTTGATT
TTCCCGTCCTCGTGAGCCAGGTGTCCTGGATCGGATCGCTCGTGGGCATT
GGCAGTGTGATGGGCAATCTGATCGCCGGATTACTCATGGATCGCATTGG
TCGCAAGATGGTCCTTTTCTTCATTGCGATTCCCTATACGACCTTTTGGT
GCCTGATTTACTTCGTCCAAAGTGTGGAGTTCCTGTACATCGGACGACTG
ATGGCCGGCATAACTGGTGGTGCCTGCTACGTCGTCCTTCCGACCTTCAT
AAGCGAAATCGCCGACACCAATGTTCGCGGTCGCCTAGGCTCCATTATCT
TACTATCGGTGAACACGGGTGTTTTGGCGGGCTATATAGTGTCCACGAGA
GTGGATTACTTTACGTCTCCCCCGTTCATCATCGGGCTGCCCGTCTGTTA
TTTTATCTGCAACTTCCTCATTCCGGAAACCCCACATCACCTAGTTCGCA
AGGGAAAATTCGAAGCGGCCAAGAGGTCGTTCATGTTCTACAAAAACATC
AGGAAAAATGACATCAAGGCTGAGGACGAGTTCGAAGAGATGAAGTATCT
CCTTATTAAGGAGCAGACGGAGAAGGCCAAGTCCTTCGACTACAGAGATT
TCATAACCAGACCTGCATTTAAGGCCTACGCTTCTGCCGCTGTCCTGCTT
ATTAGCAATCAATTCAGTGCCAGTTTTTGTGTGACCACCTACTTGGCGGA
CGTCTTTGCCGCATCCCACACAACTCTGAATCTGGGCATGTGCACCATCA
TCATCGGAGTGCTCCAGATCGTGGGCAACTACGTGACCACTCTGTTGTGC
GATAAGTACGGAAGGAGGATACTCATGCTGACCTCCACCTTGGGAGCCTC
CGTTTGCCTAACTGCCTTCGGCACCTTCACCTTCTTCGCCGAGGCGGCTG
ATCTCTCTTCGGTTGACTGGTTACCCCTTGTGATCTTGTCCTGCTTCGTA
TTCCTCTGCAACATCGGCTTGGTGGGATGCCTATTCGTTGTGCTCGTCGA
GCTCTTTCCGGCCAAGATTCGATCTGTGAGCGTCTCCACCTTTGTGGTGA
TCCTAAGCAGTACAGTATTTCTCACACTGAAAATCTTTCCCATCTGTATG
GCTGTTTGGGGCACCTCGGTTACCATGTGGAGCTGTAGCGGAATTACGTT
TTTCTCGTTTCTCTACTTCTGCTTTTTTCTGGAGGAGACCAACGGAAAAT
CGCTACTGGCGGCTGCAAGCTTTCTAGACCAT

BO07980.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:04:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG3285-RB 1401 CG3285-PB 1..1398 17..1414 6990 100 Plus
CG3285-RA 1401 CG3285-PA 1..1398 17..1414 6990 100 Plus
CG15408-RA 1401 CG15408-PA 924..1013 940..1029 195 81.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:04:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3285-RB 1595 CG3285-RB 35..1433 16..1414 6995 100 Plus
CG3285-RA 1631 CG3285-RA 35..1433 16..1414 6995 100 Plus
CG15408-RA 1565 CG15408-RA 1021..1110 940..1029 195 81.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:04:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3332003..3332415 804..1216 2065 100 Plus
2L 23513712 2L 3331612..3331943 472..803 1660 100 Plus
2L 23513712 2L 3331118..3331347 111..340 1150 100 Plus
2L 23513712 2L 3332479..3332678 1215..1414 1000 100 Plus
2L 23513712 2L 3331413..3331544 340..471 660 100 Plus
2L 23513712 2L 3330962..3331056 16..110 475 100 Plus
2L 23513712 2L 3334178..3334267 940..1029 195 81.1 Plus
Blast to na_te.dros performed on 2014-11-27 20:04:25 has no hits.

BO07980.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:47 Download gff for BO07980.complete
Subject Subject Range Query Range Percent Splice Strand
CG3285-RA 1..1401 17..1415 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:06 Download gff for BO07980.complete
Subject Subject Range Query Range Percent Splice Strand
CG3285-RA 1..1414 9..1423 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:47 Download gff for BO07980.complete
Subject Subject Range Query Range Percent Splice Strand
CG3285-RA 36..1433 17..1416 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:48 Download gff for BO07980.complete
Subject Subject Range Query Range Percent Splice Strand
CG3285-RA 1..1414 9..1423 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:14:09 Download gff for BO07980.complete
Subject Subject Range Query Range Percent Splice Strand
CG3285-RA 36..1433 17..1416 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:14:09 Download gff for BO07980.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3330963..3331056 17..110 100 -> Plus
2L 3331118..3331347 111..340 100 -> Plus
2L 3331414..3331544 341..471 100 -> Plus
2L 3331612..3331943 472..803 100 -> Plus
2L 3332003..3332415 804..1216 100 -> Plus
2L 3332481..3332678 1217..1416 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:47 Download gff for BO07980.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3330963..3331056 17..110 100 -> Plus
arm_2L 3331118..3331347 111..340 100 -> Plus
arm_2L 3331414..3331544 341..471 100 -> Plus
arm_2L 3331612..3331943 472..803 100 -> Plus
arm_2L 3332003..3332415 804..1216 100 -> Plus
arm_2L 3332481..3332678 1217..1416 99   Plus

BO07980.pep Sequence

Translation from 16 to 1432

> BO07980.pep
MTFKLRLASVFANPNCLLGRRIRHQFLVTLLLNIATFSHGLGVGWMSPVM
RDLQTDESPLDFPVLVSQVSWIGSLVGIGSVMGNLIAGLLMDRIGRKMVL
FFIAIPYTTFWCLIYFVQSVEFLYIGRLMAGITGGACYVVLPTFISEIAD
TNVRGRLGSIILLSVNTGVLAGYIVSTRVDYFTSPPFIIGLPVCYFICNF
LIPETPHHLVRKGKFEAAKRSFMFYKNIRKNDIKAEDEFEEMKYLLIKEQ
TEKAKSFDYRDFITRPAFKAYASAAVLLISNQFSASFCVTTYLADVFAAS
HTTLNLGMCTIIIGVLQIVGNYVTTLLCDKYGRRILMLTSTLGASVCLTA
FGTFTFFAEAADLSSVDWLPLVILSCFVFLCNIGLVGCLFVVLVELFPAK
IRSVSVSTFVVILSSTVFLTLKIFPICMAVWGTSVTMWSCSGITFFSFLY
FCFFLEETNGKSLLAAASFLDH

BO07980.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3285-PB 466 CG3285-PB 1..466 1..466 2398 100 Plus
CG3285-PA 466 CG3285-PA 1..466 1..466 2398 100 Plus
CG15408-PA 466 CG15408-PA 2..464 7..464 1250 51.6 Plus
CG33282-PB 460 CG33282-PB 7..458 15..464 1120 46.5 Plus
CG15406-PA 469 CG15406-PA 16..467 23..463 902 39.1 Plus