Clone Sequence Records
BO07985.3prime Sequence
907 bp (780 high quality bases) assembled on 2006-01-06
> BO07985.3prime
ATGGTCTAGAAAGCTTGCAATGTTATCCTCCAGCAGGAGATCGTTGTCAT
CGCCCCGGTCCGGCAGGCAGACAAAGAATTCGAGTAAATTCAGGATGGGA
CCACGCGAGAAGGGATTCTGATATCGTCCGCGTTTGTCCCGCAAGTAAGG
ATAACGCTTGTAGTTAAACATCTCGTTTGTGGTGAGATTCATGCAGGCGT
GCAGGATCGAAGTGCATGTGAGTATCCAACCCAAGCCGCAGAACACAACC
GCCTCGATGAGTCCCAGCACATAGAGCATCGTGAAGCCCTCGATCATCAC
GCAATAGCAGGCAAAGTAGATGGTGAACGAGCAGTTGACGGCCACCGAGA
GGACGAACAGGAAGAACCACATTCTGTTCCTCAGTCCCACGCAGTTGTAG
ATAAAGGGACAGTGGTGGTCAAAGTACGAGACACACCGGTTGCACACGCG
GCAGTGTTTGGCTCGCAGCGGCCGGAGGCACCTGCAGCTGTGACATAGTC
GGGTTAGCATCACATTTCGCTTCTTCAGTTTGTCGAAGTACGGAATCTGC
TTGATGGCCCGGTAGTAGGCATCCGAACTGAGTGGTATATACCCCGGATC
CCGGCGATTGGCAATGGCCCAGCTTATCCACATTACGGCGTTCCAGTATA
TAAAGCAATAGTGCGAGCGTCTCAATATGTTCCACGTAATGGGAATCGCA
CGGATCATGTACATGGGATAGCCCCAAAGTAGCACAGAGAAGAGAAATAG
AAACAGCGGTCCCTTGGAGTCTCCAGCTCCGCCCAAGAGCCAGCCCCAAC
TTTCCGAGACTGAGGGAATCCAACGGGACTTCTTCTTCACCTCGCCGTAC
AGCAGGCGCACCACATCCTGGTGCTGATGAGCCTGTGCCAACATGATCGG
CGTCTTT
BO07985.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6618-PA | 1758 | Patsas-RA | 867..1755 | 907..19 | 4420 | 99.8 | Minus |
| CG6618-PB | 1665 | Patsas-RB | 867..1566 | 907..208 | 3475 | 99.8 | Minus |
| CG6618-PB | 1665 | Patsas-RB | 1621..1665 | 208..164 | 225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:34:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Patsas-RA | 2466 | CG6618-RA | 1092..1980 | 907..19 | 4430 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:34:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12101495..12102194 | 208..907 | 3485 | 99.9 | Plus |
| 2L | 23513712 | 2L | 12101251..12101440 | 19..208 | 950 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:34:30 has no hits.
BO07985.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:34:29 Download gff for
BO07985.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6618-PA | 867..1758 | 16..907 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:23:21 Download gff for
BO07985.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6618-PA | 867..1758 | 16..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:27:10 Download gff for
BO07985.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patsas-RA | 1092..1980 | 19..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:51:43 Download gff for
BO07985.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patsas-RA | 1092..1980 | 19..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:51:43 Download gff for
BO07985.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12101251..12101439 | 19..207 | 100 | <- | Plus |
| 2L | 12101495..12102194 | 208..907 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:27:10 Download gff for
BO07985.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12101251..12101439 | 19..207 | 100 | <- | Plus |
| arm_2L | 12101495..12102194 | 208..907 | 99 | | Plus |
BO07985.5prime Sequence
883 bp (841 high quality bases) assembled on 2006-01-06
> BO07985.5prime
GAAGTTATCAGTCGACATGGCCTCGAAGGTGCATCCAAGTCCGGGGGCGG
CGCGCAGTGTGTGGGCGTTGCCCCTAACCGCCTCCTCCTCCTGCAACATG
GTCGTCGCGGAGGAGGATGGCCATGCCCACGCCGACGACATCCATTTGGA
TCATCGACCGCATTCGCCGCCATTAACGGGTCGCGGCACGGACGGTGGAC
ACGGCAGTAGCGGCGTCGAGGACCACGAAAATGTGCTCCTCTTTGAGGGG
CTCGATGGTGCCACCACCGTGAGTTTGGACGACATCTTCGATATTATCAA
GAACGGAGAGGTCAGCGAGGTGGAGAATCTCGTGGACAAGTTCGGCATGG
AGTGTCTGTCGGCCAGGGATCGTCATGGCTACACGCCAGCCCACTGGATA
GCTCTCAACGGCAATGTCCAGCTGATGCGATACCTCATCGAACGCACGGC
TCCGATCGATCTGCCCTGTTTGGGTACGCAGGGTCCACGGCCCATTCACT
GGGCGTGCAGGAAGGGTCATGCGTCCGTGGTGCAGGTCCTCCTCCAGGCT
GGAGTTGCCGTCAATGCGGCGGACTTCAAGGGACTTACACCCCTCCATCT
CGCCTGCATGTACGGCCGTACTGCAACGGCGGCCTATCTTCTTGGAATGG
GAGCGCTGAACAACCTAACTGACATAAACGGCGATACGGCACTCCACTGG
GCAGCGTACAAGGGACATGCCGATCTTATGCGACTCCTCATGTATTCCGG
CGTTGAGCTTCAAAAGACGGACAACTTTGGATCGACTCCACTGCATCTGG
CTTGCCTGTCTGGTAACATGACGTGCGTTCGCCTGCTGTGCGAGAAGTCC
CAGCTGGATCTGGAACCGAGGGACAAGAATGGA
BO07985.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6618-PA | 1758 | Patsas-RA | 1..867 | 17..883 | 4335 | 100 | Plus |
| CG6618-PB | 1665 | Patsas-RB | 1..867 | 17..883 | 4335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:29:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Patsas-RA | 2466 | CG6618-RA | 224..1092 | 15..883 | 4345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:29:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12102194..12103062 | 883..15 | 4345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:29:25 has no hits.
BO07985.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:34:30 Download gff for
BO07985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6618-PB | 1..866 | 17..882 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:23:22 Download gff for
BO07985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6618-PB | 1..866 | 17..882 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:09:28 Download gff for
BO07985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patsas-RA | 221..1091 | 12..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:39:18 Download gff for
BO07985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patsas-RA | 221..1091 | 12..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:39:18 Download gff for
BO07985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12102195..12103065 | 12..882 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:09:28 Download gff for
BO07985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12102195..12103065 | 12..882 | 99 | | Minus |
BO07985.complete Sequence
1789 bp (1789 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631005
> BO07985.complete
GAAGTTATCAGTCGACATGGCCTCGAAGGTGCATCCAAGTCCGGGGGCGG
CGCGCAGTGTGTGGGCGTTGCCCCTAACCGCCTCCTCCTCCTGCAACATG
GTCGTCGCGGAGGAGGATGGCCATGCCCACGCCGACGACATCCATTTGGA
TCATCGACCGCATTCGCCGCCATTAACGGGTCGCGGCACGGACGGTGGAC
ACGGCAGTAGCGGCGTCGAGGACCACGAAAATGTGCTCCTCTTTGAGGGG
CTCGATGGTGCCACCACCGTGAGTTTGGACGACATCTTCGATATTATCAA
GAACGGAGAGGTCAGCGAGGTGGAGAATCTCGTGGACAAGTTCGGCATGG
AGTGTCTGTCGGCCAGGGATCGTCATGGCTACACGCCAGCCCACTGGATA
GCTCTCAACGGCAATGTCCAGCTGATGCGATACCTCATCGAACGCACGGC
TCCGATCGATCTGCCCTGTTTGGGTACGCAGGGTCCACGGCCCATTCACT
GGGCGTGCAGGAAGGGTCATGCGTCCGTGGTGCAGGTCCTCCTCCAGGCT
GGAGTTGCCGTCAATGCGGCGGACTTCAAGGGACTTACACCCCTCCATCT
CGCCTGCATGTACGGCCGTACTGCAACGGCGGCCTATCTTCTTGGAATGG
GAGCGCTGAACAACCTAACTGACATAAACGGCGATACGGCACTCCACTGG
GCAGCGTACAAGGGACATGCCGATCTTATGCGACTCCTCATGTATTCCGG
CGTTGAGCTTCAAAAGACGGACAACTTTGGATCGACTCCACTGCATCTGG
CTTGCCTGTCTGGTAACATGACGTGCGTTCGCCTGCTGTGCGAGAAGTCC
CAGCTGGATCTGGAACCGAGGGACAAGAATGGAAAGACGCCGATCATGTT
GGCACAGGCTCATCAGCACCAGGATGTGGTGCGCCTGCTGTACGGCGAGG
TGAAGAAGAAGTCCCGTTGGATTCCCTCAGTCTCGGAAAGTTGGGGCTGG
CTCTTTGGCGGAGCTGGAGACTCCAAGGGACCGCTGTTTCTATTTCTCTT
CTCTGTGCTACTTTGGGGCTATCCCATGTACATGATCCGTGCGATTCCCA
TTACGTGGAACATATTGAGACGCTCGCACTATTGCTTTATATACTGGAAC
GCCGTAATGTGGATAAGCTGGGCCATTGCCAATCGCCGGGATCCGGGGTA
TATACCACTCAGTTCGGATGCCTACTACCGGGCCATCAAGCAGATTCCGT
ACTTCGACAAACTGAAGAAGCGAAATGTGATGCTAACCCGACTATGTCAC
AGCTGCAGGTGCCTCCGGCCGCTGCGAGCCAAACACTGCCGCGTGTGCAA
CCGGTGTGTCTCGTACTTTGACCACCACTGTCCCTTTATCTACAACTGCG
TGGGACTGAGGAACAGAATGTGGTTCTTCCTGTTCGTCCTCTCGGTGGCC
GTCAACTGCTCGTTCACCATCTACTTTGCCTGCTATTGCGTGATGATCGA
GGGCTTCACGATGCTCTATGTGCTGGGACTCATCGAGGCGGTTGTGTTCT
GCGGCTTGGGTTGGATACTCACATGCACTTCGATCCTGCACGCCTGCATG
AATCTCACCACAAACGAGATGTTTAACTACAAGCGTTATCCTTACTTGCG
GGACAAACGCGGACGATATCAGAATCCCTTCTCGCGTGGTCCCATCCTGA
ATTTACTCGAATTCTTTGTCTGCCTGCCGGACCGGGGCGATGACAACGAT
CTCCTGCTGGAGGATAACATTGCAAGCTTTCTAGACCAT
BO07985.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:58:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Patsas-RA | 1758 | CG6618-PA | 1..1755 | 17..1771 | 8775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:58:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Patsas-RA | 2466 | CG6618-RA | 224..1980 | 15..1771 | 8785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:58:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12101495..12103062 | 1582..15 | 7840 | 100 | Minus |
| 2L | 23513712 | 2L | 12101251..12101440 | 1771..1582 | 950 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:58:40 has no hits.
BO07985.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:39 Download gff for
BO07985.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patsas-RA | 1..1758 | 17..1774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:17 Download gff for
BO07985.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patsas-RA | 221..1980 | 12..1771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:42:35 Download gff for
BO07985.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patsas-RA | 226..1980 | 17..1773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:39 Download gff for
BO07985.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patsas-RA | 221..1980 | 12..1771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:47:29 Download gff for
BO07985.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patsas-RA | 226..1980 | 17..1773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:47:29 Download gff for
BO07985.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12101248..12101439 | 1583..1773 | 98 | <- | Minus |
| 2L | 12101495..12103060 | 17..1582 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:42:35 Download gff for
BO07985.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12101248..12101439 | 1583..1773 | 98 | <- | Minus |
| arm_2L | 12101495..12103060 | 17..1582 | 100 | | Minus |
BO07985.pep Sequence
Translation from 16 to 1789
> BO07985.pep
MASKVHPSPGAARSVWALPLTASSSCNMVVAEEDGHAHADDIHLDHRPHS
PPLTGRGTDGGHGSSGVEDHENVLLFEGLDGATTVSLDDIFDIIKNGEVS
EVENLVDKFGMECLSARDRHGYTPAHWIALNGNVQLMRYLIERTAPIDLP
CLGTQGPRPIHWACRKGHASVVQVLLQAGVAVNAADFKGLTPLHLACMYG
RTATAAYLLGMGALNNLTDINGDTALHWAAYKGHADLMRLLMYSGVELQK
TDNFGSTPLHLACLSGNMTCVRLLCEKSQLDLEPRDKNGKTPIMLAQAHQ
HQDVVRLLYGEVKKKSRWIPSVSESWGWLFGGAGDSKGPLFLFLFSVLLW
GYPMYMIRAIPITWNILRRSHYCFIYWNAVMWISWAIANRRDPGYIPLSS
DAYYRAIKQIPYFDKLKKRNVMLTRLCHSCRCLRPLRAKHCRVCNRCVSY
FDHHCPFIYNCVGLRNRMWFFLFVLSVAVNCSFTIYFACYCVMIEGFTML
YVLGLIEAVVFCGLGWILTCTSILHACMNLTTNEMFNYKRYPYLRDKRGR
YQNPFSRGPILNLLEFFVCLPDRGDDNDLLLEDNIASFLDH
BO07985.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:37:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Patsas-PA | 585 | CG6618-PA | 1..585 | 1..585 | 3198 | 100 | Plus |
| Hip14-PC | 637 | CG6017-PC | 47..589 | 91..569 | 519 | 27.6 | Plus |
| Hip14-PA | 637 | CG6017-PA | 47..589 | 91..569 | 519 | 27.6 | Plus |
| Hip14-PB | 655 | CG6017-PB | 47..589 | 91..569 | 519 | 27.6 | Plus |
| Ank2-PN | 1159 | CG34416-PN | 396..587 | 114..308 | 261 | 33.3 | Plus |
