Clone Sequence Records
BO07987.3prime Sequence
923 bp (791 high quality bases) assembled on 2006-01-06
> BO07987.3prime
ATGGTCTAGAAAGCTTGCGTCTCGACTTAGGGCTAGTTGCACTAGGGGCA
GCACCTTGATAGAGGACAAGTCTGCCAGAATCGCTTCGATGCTATCCAAC
GAGGCCACCTGCATGATGCTCTCCTTTCGAAAGCTAAGAATGATGATGGC
GAATAGAGGAAGGATCTCCAAGCTATCAAAGCCAAGGATCAGATCCCAGA
GGACCAGCAATTGATCGGGAGGCAAATGTCCGGAAAACGCTCGCATAAGC
CATTTGAAGACCACCCGCAGGGGCTGTATCTGAAGCTCTCGGAAATGGGA
CCATAACTGCGGTTCGTATGTCTGCAGCAGCTTCTCGAAGAGCAGGCACA
GACTGACAATCCCTTGAGGATGCGTGTTTATGGTGGTCAAGCGATGGCAG
TACCGGATATAGAAGGCCCGGAATGTATAGTATAGACTCACCGGCGAGTC
ATACAGATAACAAAAGGGGGCGGCAAACATGCAGATGCCGTGGAAGGGCA
CCACACCCGATGGAGGACCTTCGTAGGTCTTGCCCTTCACCGGAAACGTC
TCGTATTCCACACATCCACCGATATCGGTGTCCCGAGAAAAGCAGAGCAG
CACCTGGTAGAGCACGTCCTCGAACACAAAGTACTGGTCGTCGTTGGAGG
CCGTCAACTGAATGTCCTTGAAGACCAGTTTGTCAACGATGTGATCCGTA
GTCCAAACGGCATTGCGCAGCTTTTGCCAGTACTCAATATCGTAGTCATG
TAGCTTGCTGTCCAGCACCGAAGCCCAGAGAGCTCCCCTATAAGGTGCGG
GTGTGCAGCCCTTCTTCAGAAACTGCTGGCACATGGGCGCATGCCTGGCC
TCCAGAATCCTCTGGCACTGAACCGTANGATCCGGCACTCCCAAATAGCT
ATCACTTCGCAGCAGATCCGCGT
BO07987.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7742-PA | 1530 | CG7742-RA | 623..1527 | 923..19 | 4506 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:41:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7742-RC | 1894 | CG7742-RC | 893..1797 | 923..19 | 4514 | 99.9 | Minus |
CG7742-RB | 1429 | CG7742-RB | 428..1332 | 923..19 | 4514 | 99.9 | Minus |
CG7742-RD | 2119 | CG7742-RD | 1118..2022 | 923..19 | 4514 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:41:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5212863..5213332 | 272..741 | 2350 | 100 | Plus |
2L | 23513712 | 2L | 5213387..5213569 | 741..923 | 904 | 99.5 | Plus |
2L | 23513712 | 2L | 5212492..5212663 | 19..190 | 860 | 100 | Plus |
2L | 23513712 | 2L | 5212715..5212796 | 190..271 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 15:41:35 has no hits.
BO07987.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:34:33 Download gff for
BO07987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7742-PA | 623..1530 | 15..923 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:23:27 Download gff for
BO07987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7742-PA | 623..1530 | 15..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:08:43 Download gff for
BO07987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7742-RA | 767..1674 | 15..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:20:56 Download gff for
BO07987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7742-RD | 1118..2025 | 15..923 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:20:56 Download gff for
BO07987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5212488..5212662 | 15..189 | 98 | <- | Plus |
2L | 5212715..5212796 | 190..271 | 100 | <- | Plus |
2L | 5212863..5213332 | 272..741 | 100 | <- | Plus |
2L | 5213388..5213569 | 742..923 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:08:43 Download gff for
BO07987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5212488..5212662 | 15..189 | 98 | <- | Plus |
arm_2L | 5212715..5212796 | 190..271 | 100 | <- | Plus |
arm_2L | 5212863..5213332 | 272..741 | 100 | <- | Plus |
arm_2L | 5213388..5213569 | 742..923 | 99 | | Plus |
BO07987.5prime Sequence
980 bp (818 high quality bases) assembled on 2006-01-06
> BO07987.5prime
GAAGTTATCAGTCGACATGGAGGAGCTGCAGGATGCCAGCATCCACCATA
TGACCGCAAAGGTAATCGCGGCCATCAAGAACACTAAGAGCTACGAGCCC
ATCTACAAGGAGCTGCAGAAGCTGGTCTGCAATCCCAGCGTAGATACTCA
CGATATGCGCAACACCCTCGAGGATGCCATCAAGAGCGCCGGACTGGAGA
CGGAGATCCGGAATATTGTCTACAACCTGGTCCGCACGCGGCTGTCGAAA
ACAGATGACAAAAACCTGGCCAACAAACAGGGAGCGAAACCCACCGTTAG
TGATCCACTTGGATATTTAAAAAGAGCTGGTGTGCTTTGGGATCGAAGGG
TTAGGAAGAGTTTGAATGCCATGTGTACAGAGCTGAAGGTTCCATTGCAT
GGACAACCAAGGATCAGTGCTGATCGCGAGGACTTTATGGCCAAGTGGAA
CGAACTGAGCAACTACAATATGGATCTGGCCAACTATAGGCCTGTTTACG
CTCCAAAGGATTTACTGGAGGTGCTACTCTCGCTAAAAGGACCCGCCAAA
ACCACTGAAAATACAGATCAAATCCCCCAATGGGAGTTCTCCCACATTGC
ACTACCTGTGAAAAATCTTTTCGAGCTGCGTGCCCACTACGCGGATCTGC
TGCGAAGTGATAGCTATTTGGGAGTGCCGGATCTTACGGTTCAGTGCCAG
AGGATTCTGGAGGCCAGGCATGCGCCCATGTGCCAGCAGTTTCTGAAGAA
GGGCTGCACACCCGCACCTTATAGGGGAGCTCTCTGGGCTTCGGTGCTGG
ACAGCAAGCTACATGACTACGATATTGAGTACTGGCAAAAGCTGCGCAAT
GCCGTTTGGACTACGGATCACATCGTTGAACAACTGGTCTTCAAGGACAT
TCAGTTGACGGCCTCCAACGACGACNAGTACTTTGTGGTCGAGGACGTGC
TCTACCAGGTGCTGCTCTGCTTTTCTCGGG
BO07987.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7742-PA | 1530 | CG7742-RA | 1..964 | 17..980 | 4726 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:51:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7742-RC | 1894 | CG7742-RC | 266..1234 | 12..980 | 4774 | 99.5 | Plus |
CG7742-RD | 2119 | CG7742-RD | 491..1459 | 12..980 | 4774 | 99.5 | Plus |
CG7742-RA | 1768 | CG7742-RA | 140..1108 | 12..980 | 4774 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:50:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5214317..5214591 | 286..12 | 1360 | 99.6 | Minus |
2L | 23513712 | 2L | 5213387..5213640 | 821..568 | 1270 | 100 | Minus |
2L | 23513712 | 2L | 5213837..5214024 | 473..286 | 940 | 100 | Minus |
2L | 23513712 | 2L | 5213173..5213332 | 980..821 | 744 | 97.5 | Minus |
2L | 23513712 | 2L | 5213690..5213784 | 567..473 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:51:00 has no hits.
BO07987.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:34:34 Download gff for
BO07987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7742-PA | 1..964 | 17..980 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:23:28 Download gff for
BO07987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7742-PA | 1..964 | 17..980 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:45:29 Download gff for
BO07987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7742-RA | 135..1108 | 3..980 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:28:02 Download gff for
BO07987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7742-RA | 135..1108 | 3..980 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:28:02 Download gff for
BO07987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5213173..5213332 | 821..980 | 97 | <- | Minus |
2L | 5213388..5213640 | 568..820 | 100 | <- | Minus |
2L | 5213690..5213783 | 474..567 | 100 | <- | Minus |
2L | 5213837..5214023 | 287..473 | 100 | <- | Minus |
2L | 5214317..5214596 | 3..286 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:45:29 Download gff for
BO07987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5213173..5213332 | 821..980 | 97 | <- | Minus |
arm_2L | 5213388..5213640 | 568..820 | 100 | <- | Minus |
arm_2L | 5213690..5213783 | 474..567 | 100 | <- | Minus |
arm_2L | 5213837..5214023 | 287..473 | 100 | <- | Minus |
arm_2L | 5214317..5214596 | 3..286 | 98 | | Minus |
BO07987.complete Sequence
1561 bp (1561 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631006
> BO07987.complete
GAAGTTATCAGTCGACATGGAGGAGCTGCAGGATGCCAGCATCCACCATA
TGACCGCAAAGGTAATCGCGGCCATCAAGAACACTAAGAGCTACGAGCCC
ATCTACAAGGAGCTGCAGAAGCTGGTCTGCAATCCCAGCGTAGATACTCA
CGATATGCGCAACACCCTCGAGGATGCCATCAAGAGCGCCGGACTGGAGA
CGGAGATCCGGAATATTGTCTACAACCTGGTCCGCACGCGGCTGTCGAAA
ACAGATGACAAAAACCTGGCCAACAAACAGGGAGCGAAACCCACCGTTAG
TGATCCACTTGGATATTTAAAAAGAGCTGGTGTGCTTTGGGATCGAAGGG
TTAGGAAGAGTTTGAATGCCATGTGTACAGAGCTGAAGGTTCCATTGCAT
GGACAACCAAGGATCAGTGCTGATCGCGAGGACTTTATGGCCAAGTGGAA
CGAACTGAGCAACTACAATATGGATCTGGCCAACTATAGGCCTGTTTACG
CTCCAAAGGATTTACTGGAGGTGCTACTCTCGCTAAAAGGACCCGCCAAA
ACCACTGAAAATACAGATCAAATCCCCCAATGGGAGTTCTCCCACATTGC
ACTACCTGTGAAAAATCTTTTCGAGCTGCGTGCCCACTACGCGGATCTGC
TGCGAAGTGATAGCTATTTGGGAGTGCCGGATCTTACGGTTCAGTGCCAG
AGGATTCTGGAGGCCAGGCATGCGCCCATGTGCCAGCAGTTTCTGAAGAA
GGGCTGCACACCCGCACCTTATAGGGGAGCTCTCTGGGCTTCGGTGCTGG
ACAGCAAGCTACATGACTACGATATTGAGTACTGGCAAAAGCTGCGCAAT
GCCGTTTGGACTACGGATCACATCGTTGACAAACTGGTCTTCAAGGACAT
TCAGTTGACGGCCTCCAACGACGACCAGTACTTTGTGTTCGAGGACGTGC
TCTACCAGGTGCTGCTCTGCTTTTCTCGGGACACCGATATCGGTGGATGT
GTGGAATACGAGACGTTTCCGGTGAAGGGCAAGACCTACGAAGGTCCTCC
ATCGGGTGTGGTGCCCTTCCACGGCATCTGCATGTTTGCCGCCCCCTTTT
GTTATCTGTATGACTCGCCGGTGAGTCTATACTATACATTCCGGGCCTTC
TATATCCGGTACTGCCATCGCTTGACCACCATAAACACGCATCCTCAAGG
GATTGTCAGTCTGTGCCTGCTCTTCGAGAAGCTGCTGCAGACATACGAAC
CGCAGTTATGGTCCCATTTCCGAGAGCTTCAGATACAGCCCCTGCGGGTG
GTCTTCAAATGGCTTATGCGAGCGTTTTCCGGACATTTGCCTCCCGATCA
ATTGCTGGTCCTCTGGGATCTGATCCTTGGCTTTGATAGCTTGGAGATCC
TTCCTCTATTCGCCATCATCATTCTTAGCTTTCGAAAGGAGAGCATCATG
CAGGTGGCCTCGTTGGATAGCATCGAAGCGATTCTGGCAGACTTGTCCTC
TATCAAGGTGCTGCCCCTAGTGCAACTAGCCCTAAGTCGAGACGCAAGCT
TTCTAGACCAT
BO07987.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:38:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7742-RC | 1530 | CG7742-PC | 1..1527 | 17..1543 | 7635 | 100 | Plus |
CG7742-RD | 1530 | CG7742-PD | 1..1527 | 17..1543 | 7635 | 100 | Plus |
CG7742-RA | 1530 | CG7742-PA | 1..1527 | 17..1543 | 7635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:38:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7742-RC | 1894 | CG7742-RC | 266..1797 | 12..1543 | 7645 | 99.9 | Plus |
CG7742-RD | 2119 | CG7742-RD | 491..2022 | 12..1543 | 7645 | 99.9 | Plus |
CG7742-RA | 1768 | CG7742-RA | 140..1671 | 12..1543 | 7645 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:38:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5212863..5213332 | 1290..821 | 2350 | 100 | Minus |
2L | 23513712 | 2L | 5214317..5214591 | 286..12 | 1360 | 99.6 | Minus |
2L | 23513712 | 2L | 5213387..5213640 | 821..568 | 1270 | 100 | Minus |
2L | 23513712 | 2L | 5213837..5214024 | 473..286 | 940 | 100 | Minus |
2L | 23513712 | 2L | 5212492..5212663 | 1543..1372 | 860 | 100 | Minus |
2L | 23513712 | 2L | 5213690..5213784 | 567..473 | 475 | 100 | Minus |
2L | 23513712 | 2L | 5212715..5212796 | 1372..1291 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:38:32 has no hits.
BO07987.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:49 Download gff for
BO07987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7742-RA | 1..1530 | 17..1547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:07 Download gff for
BO07987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7742-RA | 82..1621 | 3..1547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:22 Download gff for
BO07987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7742-RA | 145..1671 | 17..1545 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:49 Download gff for
BO07987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7742-RA | 82..1621 | 3..1547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:50 Download gff for
BO07987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7742-RA | 145..1671 | 17..1545 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:50 Download gff for
BO07987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5214317..5214586 | 17..286 | 100 | | Minus |
2L | 5212490..5212662 | 1373..1545 | 98 | <- | Minus |
2L | 5212715..5212796 | 1291..1372 | 100 | <- | Minus |
2L | 5212863..5213332 | 821..1290 | 100 | <- | Minus |
2L | 5213388..5213640 | 568..820 | 100 | <- | Minus |
2L | 5213690..5213783 | 474..567 | 100 | <- | Minus |
2L | 5213837..5214023 | 287..473 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:22 Download gff for
BO07987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5213388..5213640 | 568..820 | 100 | <- | Minus |
arm_2L | 5212490..5212662 | 1373..1545 | 98 | <- | Minus |
arm_2L | 5212715..5212796 | 1291..1372 | 100 | <- | Minus |
arm_2L | 5212863..5213332 | 821..1290 | 100 | <- | Minus |
arm_2L | 5213690..5213783 | 474..567 | 100 | <- | Minus |
arm_2L | 5213837..5214023 | 287..473 | 100 | <- | Minus |
arm_2L | 5214317..5214586 | 17..286 | 100 | | Minus |
BO07987.pep Sequence
Translation from 16 to 1561
> BO07987.pep
MEELQDASIHHMTAKVIAAIKNTKSYEPIYKELQKLVCNPSVDTHDMRNT
LEDAIKSAGLETEIRNIVYNLVRTRLSKTDDKNLANKQGAKPTVSDPLGY
LKRAGVLWDRRVRKSLNAMCTELKVPLHGQPRISADREDFMAKWNELSNY
NMDLANYRPVYAPKDLLEVLLSLKGPAKTTENTDQIPQWEFSHIALPVKN
LFELRAHYADLLRSDSYLGVPDLTVQCQRILEARHAPMCQQFLKKGCTPA
PYRGALWASVLDSKLHDYDIEYWQKLRNAVWTTDHIVDKLVFKDIQLTAS
NDDQYFVFEDVLYQVLLCFSRDTDIGGCVEYETFPVKGKTYEGPPSGVVP
FHGICMFAAPFCYLYDSPVSLYYTFRAFYIRYCHRLTTINTHPQGIVSLC
LLFEKLLQTYEPQLWSHFRELQIQPLRVVFKWLMRAFSGHLPPDQLLVLW
DLILGFDSLEILPLFAIIILSFRKESIMQVASLDSIEAILADLSSIKVLP
LVQLALSRDASFLDH
BO07987.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7742-PC | 509 | CG7742-PC | 1..509 | 1..509 | 2682 | 100 | Plus |
CG7742-PD | 509 | CG7742-PD | 1..509 | 1..509 | 2682 | 100 | Plus |
CG7742-PA | 509 | CG7742-PA | 1..509 | 1..509 | 2682 | 100 | Plus |
CG7742-PB | 441 | CG7742-PB | 1..441 | 67..509 | 2232 | 95.9 | Plus |