Clone BO07987 Report

Search the DGRC for BO07987

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:79
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG7742-RA
Protein status:BO07987.pep: validated full length
Sequenced Size:1561

Clone Sequence Records

BO07987.3prime Sequence

923 bp (791 high quality bases) assembled on 2006-01-06

> BO07987.3prime
ATGGTCTAGAAAGCTTGCGTCTCGACTTAGGGCTAGTTGCACTAGGGGCA
GCACCTTGATAGAGGACAAGTCTGCCAGAATCGCTTCGATGCTATCCAAC
GAGGCCACCTGCATGATGCTCTCCTTTCGAAAGCTAAGAATGATGATGGC
GAATAGAGGAAGGATCTCCAAGCTATCAAAGCCAAGGATCAGATCCCAGA
GGACCAGCAATTGATCGGGAGGCAAATGTCCGGAAAACGCTCGCATAAGC
CATTTGAAGACCACCCGCAGGGGCTGTATCTGAAGCTCTCGGAAATGGGA
CCATAACTGCGGTTCGTATGTCTGCAGCAGCTTCTCGAAGAGCAGGCACA
GACTGACAATCCCTTGAGGATGCGTGTTTATGGTGGTCAAGCGATGGCAG
TACCGGATATAGAAGGCCCGGAATGTATAGTATAGACTCACCGGCGAGTC
ATACAGATAACAAAAGGGGGCGGCAAACATGCAGATGCCGTGGAAGGGCA
CCACACCCGATGGAGGACCTTCGTAGGTCTTGCCCTTCACCGGAAACGTC
TCGTATTCCACACATCCACCGATATCGGTGTCCCGAGAAAAGCAGAGCAG
CACCTGGTAGAGCACGTCCTCGAACACAAAGTACTGGTCGTCGTTGGAGG
CCGTCAACTGAATGTCCTTGAAGACCAGTTTGTCAACGATGTGATCCGTA
GTCCAAACGGCATTGCGCAGCTTTTGCCAGTACTCAATATCGTAGTCATG
TAGCTTGCTGTCCAGCACCGAAGCCCAGAGAGCTCCCCTATAAGGTGCGG
GTGTGCAGCCCTTCTTCAGAAACTGCTGGCACATGGGCGCATGCCTGGCC
TCCAGAATCCTCTGGCACTGAACCGTANGATCCGGCACTCCCAAATAGCT
ATCACTTCGCAGCAGATCCGCGT

BO07987.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG7742-PA 1530 CG7742-RA 623..1527 923..19 4506 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7742-RC 1894 CG7742-RC 893..1797 923..19 4514 99.9 Minus
CG7742-RB 1429 CG7742-RB 428..1332 923..19 4514 99.9 Minus
CG7742-RD 2119 CG7742-RD 1118..2022 923..19 4514 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5212863..5213332 272..741 2350 100 Plus
2L 23513712 2L 5213387..5213569 741..923 904 99.5 Plus
2L 23513712 2L 5212492..5212663 19..190 860 100 Plus
2L 23513712 2L 5212715..5212796 190..271 410 100 Plus
Blast to na_te.dros performed on 2015-02-12 15:41:35 has no hits.

BO07987.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:34:33 Download gff for BO07987.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7742-PA 623..1530 15..923 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:23:27 Download gff for BO07987.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7742-PA 623..1530 15..923 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:08:43 Download gff for BO07987.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7742-RA 767..1674 15..923 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:20:56 Download gff for BO07987.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7742-RD 1118..2025 15..923 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:20:56 Download gff for BO07987.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5212488..5212662 15..189 98 <- Plus
2L 5212715..5212796 190..271 100 <- Plus
2L 5212863..5213332 272..741 100 <- Plus
2L 5213388..5213569 742..923 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:08:43 Download gff for BO07987.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5212488..5212662 15..189 98 <- Plus
arm_2L 5212715..5212796 190..271 100 <- Plus
arm_2L 5212863..5213332 272..741 100 <- Plus
arm_2L 5213388..5213569 742..923 99   Plus

BO07987.5prime Sequence

980 bp (818 high quality bases) assembled on 2006-01-06

> BO07987.5prime
GAAGTTATCAGTCGACATGGAGGAGCTGCAGGATGCCAGCATCCACCATA
TGACCGCAAAGGTAATCGCGGCCATCAAGAACACTAAGAGCTACGAGCCC
ATCTACAAGGAGCTGCAGAAGCTGGTCTGCAATCCCAGCGTAGATACTCA
CGATATGCGCAACACCCTCGAGGATGCCATCAAGAGCGCCGGACTGGAGA
CGGAGATCCGGAATATTGTCTACAACCTGGTCCGCACGCGGCTGTCGAAA
ACAGATGACAAAAACCTGGCCAACAAACAGGGAGCGAAACCCACCGTTAG
TGATCCACTTGGATATTTAAAAAGAGCTGGTGTGCTTTGGGATCGAAGGG
TTAGGAAGAGTTTGAATGCCATGTGTACAGAGCTGAAGGTTCCATTGCAT
GGACAACCAAGGATCAGTGCTGATCGCGAGGACTTTATGGCCAAGTGGAA
CGAACTGAGCAACTACAATATGGATCTGGCCAACTATAGGCCTGTTTACG
CTCCAAAGGATTTACTGGAGGTGCTACTCTCGCTAAAAGGACCCGCCAAA
ACCACTGAAAATACAGATCAAATCCCCCAATGGGAGTTCTCCCACATTGC
ACTACCTGTGAAAAATCTTTTCGAGCTGCGTGCCCACTACGCGGATCTGC
TGCGAAGTGATAGCTATTTGGGAGTGCCGGATCTTACGGTTCAGTGCCAG
AGGATTCTGGAGGCCAGGCATGCGCCCATGTGCCAGCAGTTTCTGAAGAA
GGGCTGCACACCCGCACCTTATAGGGGAGCTCTCTGGGCTTCGGTGCTGG
ACAGCAAGCTACATGACTACGATATTGAGTACTGGCAAAAGCTGCGCAAT
GCCGTTTGGACTACGGATCACATCGTTGAACAACTGGTCTTCAAGGACAT
TCAGTTGACGGCCTCCAACGACGACNAGTACTTTGTGGTCGAGGACGTGC
TCTACCAGGTGCTGCTCTGCTTTTCTCGGG

BO07987.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG7742-PA 1530 CG7742-RA 1..964 17..980 4726 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7742-RC 1894 CG7742-RC 266..1234 12..980 4774 99.5 Plus
CG7742-RD 2119 CG7742-RD 491..1459 12..980 4774 99.5 Plus
CG7742-RA 1768 CG7742-RA 140..1108 12..980 4774 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:50:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5214317..5214591 286..12 1360 99.6 Minus
2L 23513712 2L 5213387..5213640 821..568 1270 100 Minus
2L 23513712 2L 5213837..5214024 473..286 940 100 Minus
2L 23513712 2L 5213173..5213332 980..821 744 97.5 Minus
2L 23513712 2L 5213690..5213784 567..473 475 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:51:00 has no hits.

BO07987.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:34:34 Download gff for BO07987.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7742-PA 1..964 17..980 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:23:28 Download gff for BO07987.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7742-PA 1..964 17..980 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:45:29 Download gff for BO07987.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7742-RA 135..1108 3..980 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:28:02 Download gff for BO07987.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7742-RA 135..1108 3..980 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:28:02 Download gff for BO07987.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5213173..5213332 821..980 97 <- Minus
2L 5213388..5213640 568..820 100 <- Minus
2L 5213690..5213783 474..567 100 <- Minus
2L 5213837..5214023 287..473 100 <- Minus
2L 5214317..5214596 3..286 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:45:29 Download gff for BO07987.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5213173..5213332 821..980 97 <- Minus
arm_2L 5213388..5213640 568..820 100 <- Minus
arm_2L 5213690..5213783 474..567 100 <- Minus
arm_2L 5213837..5214023 287..473 100 <- Minus
arm_2L 5214317..5214596 3..286 98   Minus

BO07987.complete Sequence

1561 bp (1561 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631006

> BO07987.complete
GAAGTTATCAGTCGACATGGAGGAGCTGCAGGATGCCAGCATCCACCATA
TGACCGCAAAGGTAATCGCGGCCATCAAGAACACTAAGAGCTACGAGCCC
ATCTACAAGGAGCTGCAGAAGCTGGTCTGCAATCCCAGCGTAGATACTCA
CGATATGCGCAACACCCTCGAGGATGCCATCAAGAGCGCCGGACTGGAGA
CGGAGATCCGGAATATTGTCTACAACCTGGTCCGCACGCGGCTGTCGAAA
ACAGATGACAAAAACCTGGCCAACAAACAGGGAGCGAAACCCACCGTTAG
TGATCCACTTGGATATTTAAAAAGAGCTGGTGTGCTTTGGGATCGAAGGG
TTAGGAAGAGTTTGAATGCCATGTGTACAGAGCTGAAGGTTCCATTGCAT
GGACAACCAAGGATCAGTGCTGATCGCGAGGACTTTATGGCCAAGTGGAA
CGAACTGAGCAACTACAATATGGATCTGGCCAACTATAGGCCTGTTTACG
CTCCAAAGGATTTACTGGAGGTGCTACTCTCGCTAAAAGGACCCGCCAAA
ACCACTGAAAATACAGATCAAATCCCCCAATGGGAGTTCTCCCACATTGC
ACTACCTGTGAAAAATCTTTTCGAGCTGCGTGCCCACTACGCGGATCTGC
TGCGAAGTGATAGCTATTTGGGAGTGCCGGATCTTACGGTTCAGTGCCAG
AGGATTCTGGAGGCCAGGCATGCGCCCATGTGCCAGCAGTTTCTGAAGAA
GGGCTGCACACCCGCACCTTATAGGGGAGCTCTCTGGGCTTCGGTGCTGG
ACAGCAAGCTACATGACTACGATATTGAGTACTGGCAAAAGCTGCGCAAT
GCCGTTTGGACTACGGATCACATCGTTGACAAACTGGTCTTCAAGGACAT
TCAGTTGACGGCCTCCAACGACGACCAGTACTTTGTGTTCGAGGACGTGC
TCTACCAGGTGCTGCTCTGCTTTTCTCGGGACACCGATATCGGTGGATGT
GTGGAATACGAGACGTTTCCGGTGAAGGGCAAGACCTACGAAGGTCCTCC
ATCGGGTGTGGTGCCCTTCCACGGCATCTGCATGTTTGCCGCCCCCTTTT
GTTATCTGTATGACTCGCCGGTGAGTCTATACTATACATTCCGGGCCTTC
TATATCCGGTACTGCCATCGCTTGACCACCATAAACACGCATCCTCAAGG
GATTGTCAGTCTGTGCCTGCTCTTCGAGAAGCTGCTGCAGACATACGAAC
CGCAGTTATGGTCCCATTTCCGAGAGCTTCAGATACAGCCCCTGCGGGTG
GTCTTCAAATGGCTTATGCGAGCGTTTTCCGGACATTTGCCTCCCGATCA
ATTGCTGGTCCTCTGGGATCTGATCCTTGGCTTTGATAGCTTGGAGATCC
TTCCTCTATTCGCCATCATCATTCTTAGCTTTCGAAAGGAGAGCATCATG
CAGGTGGCCTCGTTGGATAGCATCGAAGCGATTCTGGCAGACTTGTCCTC
TATCAAGGTGCTGCCCCTAGTGCAACTAGCCCTAAGTCGAGACGCAAGCT
TTCTAGACCAT

BO07987.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG7742-RC 1530 CG7742-PC 1..1527 17..1543 7635 100 Plus
CG7742-RD 1530 CG7742-PD 1..1527 17..1543 7635 100 Plus
CG7742-RA 1530 CG7742-PA 1..1527 17..1543 7635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7742-RC 1894 CG7742-RC 266..1797 12..1543 7645 99.9 Plus
CG7742-RD 2119 CG7742-RD 491..2022 12..1543 7645 99.9 Plus
CG7742-RA 1768 CG7742-RA 140..1671 12..1543 7645 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5212863..5213332 1290..821 2350 100 Minus
2L 23513712 2L 5214317..5214591 286..12 1360 99.6 Minus
2L 23513712 2L 5213387..5213640 821..568 1270 100 Minus
2L 23513712 2L 5213837..5214024 473..286 940 100 Minus
2L 23513712 2L 5212492..5212663 1543..1372 860 100 Minus
2L 23513712 2L 5213690..5213784 567..473 475 100 Minus
2L 23513712 2L 5212715..5212796 1372..1291 410 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:38:32 has no hits.

BO07987.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:49 Download gff for BO07987.complete
Subject Subject Range Query Range Percent Splice Strand
CG7742-RA 1..1530 17..1547 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:07 Download gff for BO07987.complete
Subject Subject Range Query Range Percent Splice Strand
CG7742-RA 82..1621 3..1547 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:22 Download gff for BO07987.complete
Subject Subject Range Query Range Percent Splice Strand
CG7742-RA 145..1671 17..1545 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:49 Download gff for BO07987.complete
Subject Subject Range Query Range Percent Splice Strand
CG7742-RA 82..1621 3..1547 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:50 Download gff for BO07987.complete
Subject Subject Range Query Range Percent Splice Strand
CG7742-RA 145..1671 17..1545 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:50 Download gff for BO07987.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5214317..5214586 17..286 100   Minus
2L 5212490..5212662 1373..1545 98 <- Minus
2L 5212715..5212796 1291..1372 100 <- Minus
2L 5212863..5213332 821..1290 100 <- Minus
2L 5213388..5213640 568..820 100 <- Minus
2L 5213690..5213783 474..567 100 <- Minus
2L 5213837..5214023 287..473 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:22 Download gff for BO07987.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5213388..5213640 568..820 100 <- Minus
arm_2L 5212490..5212662 1373..1545 98 <- Minus
arm_2L 5212715..5212796 1291..1372 100 <- Minus
arm_2L 5212863..5213332 821..1290 100 <- Minus
arm_2L 5213690..5213783 474..567 100 <- Minus
arm_2L 5213837..5214023 287..473 100 <- Minus
arm_2L 5214317..5214586 17..286 100   Minus

BO07987.pep Sequence

Translation from 16 to 1561

> BO07987.pep
MEELQDASIHHMTAKVIAAIKNTKSYEPIYKELQKLVCNPSVDTHDMRNT
LEDAIKSAGLETEIRNIVYNLVRTRLSKTDDKNLANKQGAKPTVSDPLGY
LKRAGVLWDRRVRKSLNAMCTELKVPLHGQPRISADREDFMAKWNELSNY
NMDLANYRPVYAPKDLLEVLLSLKGPAKTTENTDQIPQWEFSHIALPVKN
LFELRAHYADLLRSDSYLGVPDLTVQCQRILEARHAPMCQQFLKKGCTPA
PYRGALWASVLDSKLHDYDIEYWQKLRNAVWTTDHIVDKLVFKDIQLTAS
NDDQYFVFEDVLYQVLLCFSRDTDIGGCVEYETFPVKGKTYEGPPSGVVP
FHGICMFAAPFCYLYDSPVSLYYTFRAFYIRYCHRLTTINTHPQGIVSLC
LLFEKLLQTYEPQLWSHFRELQIQPLRVVFKWLMRAFSGHLPPDQLLVLW
DLILGFDSLEILPLFAIIILSFRKESIMQVASLDSIEAILADLSSIKVLP
LVQLALSRDASFLDH

BO07987.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7742-PC 509 CG7742-PC 1..509 1..509 2682 100 Plus
CG7742-PD 509 CG7742-PD 1..509 1..509 2682 100 Plus
CG7742-PA 509 CG7742-PA 1..509 1..509 2682 100 Plus
CG7742-PB 441 CG7742-PB 1..441 67..509 2232 95.9 Plus