Clone Sequence Records
BO07988.3prime Sequence
992 bp (845 high quality bases) assembled on 2006-01-06
> BO07988.3prime
ATGGTCTAGAAAGCTTGCGTCTTTGGGAATCTCGTTCTCCATGCGAGTGA
GCGTTATGTTCCTGTCCGTCTGCGAGGCGTTGGCCACCTTGGAGCCGAAC
TCGCCGCCCCGGAGACGCATGCGCAAGTCCAGGGCCCTGATGTCCGTCAT
CAGCGAGTGCTGCTTGTTCTCCAGATCCACGTCGATTCGCTTGCCGTGCT
CCTCCAGCAGACTAAAGTTGGTCTTGCTCTCGTCGATCTTGACCTGCAGT
CGGCGTCGTATCTCTCGCAGCTTCTCCACCTCCAAGCAGAGCATGTCGTG
CGCCTGGTCCATGCACAGTTCCATGCCCGACCTCTGGGCACGATTCTCCA
GGCGTGTCTCGGCCAGCTTCAGTGCATCCGTCTTGTCACGCAGCGCATTC
TCCGAGGTGCGGATCTCGCACATGGCCTTCTCCATCTCCTCCTTCATCTT
GAGCTGCTGCCACTCCAGTTCGTTTCTGGCCCGCTGCGTCTCGAAGATCC
GTTTGCGGATGGTGTGCTCCGCCCGCTCCTGCTGCGACTGCAGCATGTTG
CGCGCCTTTTCGCGGCACACGAACAAAGCCTCCCGAATGGCGTACGTGTC
GGCCAGCTCATTCTCCGCCAGCAGCTTTATGTTCTTCACGTTCTCCAGCC
AGGACTCGTAGGAACAGGAGTTCTTGGGATTTCTCGTGGGATCCGGCTTG
TATGAGATATTGGCCGAGTTGCGATCGAGCGCCAGCTGTGAGTTGTCCAG
CTGCACCGCCTCCACCTTGAACTCGATCTCCAGGCCGATCTTGAAGCGCA
CTTCCTCCAGACGATTGAGCTTCTCCCACGCCTTCTGGCATCGATCGGCC
AGCAGGCGCTGGTTGTTCTCCAGCACGACCAGTTCGTTCTTGATCTCGGT
GTCGGCCTCATCGTAGGTGATCTCCCATCCGAGGCGACCGTCCCTTATGG
TCAGGCACTCGGCTATCACGGAAATCGGACCTGCCAACGCCT
BO07988.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3085-PA | 1299 | CG3085-RA | 323..1296 | 992..19 | 4845 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:32:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3085-RB | 1749 | CG3085-RB | 590..1563 | 992..19 | 4855 | 99.9 | Minus |
CG3085-RA | 1670 | CG3085-RA | 511..1484 | 992..19 | 4855 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:32:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23076020..23076671 | 670..19 | 3260 | 100 | Minus |
2R | 25286936 | 2R | 23075641..23075962 | 992..671 | 1595 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:32:55 has no hits.
BO07988.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:34:35 Download gff for
BO07988.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3085-PA | 323..1299 | 18..992 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:23:29 Download gff for
BO07988.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3085-PA | 323..1299 | 18..992 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:13:30 Download gff for
BO07988.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3085-RA | 511..1491 | 11..992 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 19:16:17 Download gff for
BO07988.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3085-RA | 511..1491 | 11..992 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:16:17 Download gff for
BO07988.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23075641..23075962 | 671..992 | 99 | -> | Minus |
2R | 23076020..23076678 | 11..670 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:13:30 Download gff for
BO07988.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18963164..18963485 | 671..992 | 99 | -> | Minus |
arm_2R | 18963543..18964201 | 11..670 | 99 | | Minus |
BO07988.5prime Sequence
900 bp (824 high quality bases) assembled on 2006-01-06
> BO07988.5prime
GAAGTTATCAGTCGACATGGCCTTCCGCTCGGTGGTTACGATGGAGAAGC
CGCTCCAGCACATTTCGCTGACGGACTGGTATGCCCGTGTGAACCAGATG
CGGAATGTGGCGGATGCCCGGAGGTCGGACGCCTTCGCCATCCGCCACTC
ATCCCGATCCTTGAGGAACGAGACGCGGATCGAGGGCGACTGGGCCAACT
ACGAGACAAATGAGGCTCTGACCGATCGCATCTCCGAGTTGAATCGCTGG
CGGGATATCATTTCCAAGTCCTTCGAGAAGATCGAGCGCGAGATATTCAT
GCTGCAGGAGGAGAAGAATGCCACGGAACGGGAGCTGGAGGCGTTGGCAG
GTCCGATTTCCGTGATAGCCGAGTGCCTGACCATAAGGGACGGTCGCCTC
GGATCGGAGATCACCTACGATGAGGCCGACACCGAGATCAAGAACGAACT
GGTCGTGCTGGAGAACAACCAGCGCCTGCTGGCCGATCGATGCCAGAAGG
CGTGGGAGAAGCTCAATCGTCTGGAGGAAGTGCGCTTCAAGATCGGCCTG
GAGATCGAGTTCAAGGTGGAGGCGGTGCAGCTGGACAACTCACAGCTGGC
GCTCGATCGCAACTCGGCCAATATCTCATACAAGCCGGATCCCACGAGAA
ATCCCAAGAACTCCTGTTCCTACGAGTCCTGGCTGGAGAACGTGAAGAAC
ATAAAGCTGCTGGCGGAGAATGAGCTGGCCGACACGTACGCCATTCGGGA
GGCTTTGTTCGTGTGCCGCGAAAAGGCGCGCAACATGCTGCAGTCGCAGC
AGGAGCGGGCGGAGCACACCATCCGCAAACGGATCTTCGAGACGCAGCGG
GCCAGAAACGAACTGGAGTGGCAGCAGCTCAAGATGAAGGAGGAGATGGG
BO07988.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3085-PA | 1299 | CG3085-RA | 1..883 | 17..899 | 4415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:51:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3085-RB | 1749 | CG3085-RB | 268..1150 | 17..899 | 4415 | 100 | Plus |
CG3085-RA | 1670 | CG3085-RA | 189..1071 | 17..899 | 4415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:51:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23075530..23075962 | 228..660 | 2165 | 100 | Plus |
2R | 25286936 | 2R | 23076020..23076258 | 661..899 | 1195 | 100 | Plus |
2R | 25286936 | 2R | 23075255..23075466 | 17..228 | 1060 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:51:33 has no hits.
BO07988.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:34:36 Download gff for
BO07988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3085-PA | 1..883 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:23:31 Download gff for
BO07988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3085-PA | 1..883 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:45:32 Download gff for
BO07988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3085-RA | 185..1071 | 9..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:29:06 Download gff for
BO07988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3085-RA | 185..1071 | 9..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:29:06 Download gff for
BO07988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23075251..23075466 | 9..228 | 98 | -> | Plus |
2R | 23075531..23075962 | 229..660 | 100 | -> | Plus |
2R | 23076020..23076258 | 661..900 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:45:32 Download gff for
BO07988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18962774..18962989 | 9..228 | 98 | -> | Plus |
arm_2R | 18963054..18963485 | 229..660 | 100 | -> | Plus |
arm_2R | 18963543..18963781 | 661..900 | 99 | | Plus |
BO07988.complete Sequence
1330 bp (1330 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631007
> BO07988.complete
GAAGTTATCAGTCGACATGGCCTTCCGCTCGGTGGTTACGATGGAGAAGC
CGCTCCAGCACATTTCGCTGACGGACTGGTATGCCCGTGTGAACCAGATG
CGGAATGTGGCGGATGCCCGGAGGTCGGACGCCTTCGCCATCCGCCACTC
ATCCCGATCCTTGAGGAACGAGACGCGGATCGAGGGCGACTGGGCCAACT
ACGAGACAAATGAGGCTCTGACCGATCGCATCTCCGAGTTGAATCGCTGG
CGGGATATCATTTCCAAGTCCTTCGAGAAGATCGAGCGCGAGATATTCAT
GCTGCAGGAGGAGAAGAATGCCACGGAACGGGAGCTGGAGGCGTTGGCAG
GTCCGATTTCCGTGATAGCCGAGTGCCTGACCATAAGGGACGGTCGCCTC
GGATCGGAGATCACCTACGATGAGGCCGACACCGAGATCAAGAACGAACT
GGTCGTGCTGGAGAACAACCAGCGCCTGCTGGCCGATCGATGCCAGAAGG
CGTGGGAGAAGCTCAATCGTCTGGAGGAAGTGCGCTTCAAGATCGGCCTG
GAGATCGAGTTCAAGGTGGAGGCGGTGCAGCTGGACAACTCACAGCTGGC
GCTCGATCGCAACTCGGCCAATATCTCATACAAGCCGGATCCCACGAGAA
ATCCCAAGAACTCCTGTTCCTACGAGTCCTGGCTGGAGAACGTGAAGAAC
ATAAAGCTGCTGGCGGAGAATGAGCTGGCCGACACGTACGCCATTCGGGA
GGCTTTGTTCGTGTGCCGCGAAAAGGCGCGCAACATGCTGCAGTCGCAGC
AGGAGCGGGCGGAGCACACCATCCGCAAACGGATCTTCGAGACGCAGCGG
GCCAGAAACGAACTGGAGTGGCAGCAGCTCAAGATGAAGGAGGAGATGGA
GAAGGCCATGTGCGAGATCCGCACCTCGGAGAATGCGCTGCGTGACAAGA
CGGATGCACTGAAGCTGGCCGAGACACGCCTGGAGAATCGTGCCCAGAGG
TCGGGCATGGAACTGTGCATGGACCAGGCGCACGACATGCTCTGCTTGGA
GGTGGAGAAGCTGCGAGAGATACGACGCCGACTGCAGGTCAAGATCGACG
AGAGCAAGACCAACTTTAGTCTGCTGGAGGAGCACGGCAAGCGAATCGAC
GTGGATCTGGAGAACAAGCAGCACTCGCTGATGACGGACATCAGGGCCCT
GGACTTGCGCATGCGTCTCCGGGGCGGCGAGTTCGGCTCCAAGGTGGCCA
ACGCCTCGCAGACGGACAGGAACATAACGCTCACTCGCATGGAGAACGAG
ATTCCCAAAGACGCAAGCTTTCTAGACCAT
BO07988.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:49:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3085-RB | 1299 | CG3085-PB | 1..1296 | 17..1312 | 6480 | 100 | Plus |
CG3085-RA | 1299 | CG3085-PA | 1..1296 | 17..1312 | 6480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:49:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3085-RB | 1749 | CG3085-RB | 268..1563 | 17..1312 | 6480 | 100 | Plus |
CG3085-RA | 1670 | CG3085-RA | 189..1484 | 17..1312 | 6480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:49:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23076020..23076671 | 661..1312 | 3260 | 100 | Plus |
2R | 25286936 | 2R | 23075530..23075962 | 228..660 | 2165 | 100 | Plus |
2R | 25286936 | 2R | 23075255..23075466 | 17..228 | 1060 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:49:44 has no hits.
BO07988.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:50 Download gff for
BO07988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3085-RA | 1..1299 | 17..1313 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:09 Download gff for
BO07988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3085-RA | 183..1489 | 9..1320 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:36 Download gff for
BO07988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3085-RA | 189..1484 | 17..1314 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:50 Download gff for
BO07988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3085-RA | 183..1489 | 9..1320 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:58 Download gff for
BO07988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3085-RA | 189..1484 | 17..1314 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:27:58 Download gff for
BO07988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23075531..23075962 | 229..660 | 100 | -> | Plus |
2R | 23075255..23075466 | 17..228 | 100 | -> | Plus |
2R | 23076020..23076671 | 661..1314 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:36 Download gff for
BO07988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18962778..18962989 | 17..228 | 100 | -> | Plus |
arm_2R | 18963054..18963485 | 229..660 | 100 | -> | Plus |
arm_2R | 18963543..18964194 | 661..1314 | 99 | | Plus |
BO07988.pep Sequence
Translation from 16 to 1330
> BO07988.pep
MAFRSVVTMEKPLQHISLTDWYARVNQMRNVADARRSDAFAIRHSSRSLR
NETRIEGDWANYETNEALTDRISELNRWRDIISKSFEKIEREIFMLQEEK
NATERELEALAGPISVIAECLTIRDGRLGSEITYDEADTEIKNELVVLEN
NQRLLADRCQKAWEKLNRLEEVRFKIGLEIEFKVEAVQLDNSQLALDRNS
ANISYKPDPTRNPKNSCSYESWLENVKNIKLLAENELADTYAIREALFVC
REKARNMLQSQQERAEHTIRKRIFETQRARNELEWQQLKMKEEMEKAMCE
IRTSENALRDKTDALKLAETRLENRAQRSGMELCMDQAHDMLCLEVEKLR
EIRRRLQVKIDESKTNFSLLEEHGKRIDVDLENKQHSLMTDIRALDLRMR
LRGGEFGSKVANASQTDRNITLTRMENEIPKDASFLDH
BO07988.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3085-PB | 432 | CG3085-PB | 1..432 | 1..432 | 2192 | 100 | Plus |
CG3085-PA | 432 | CG3085-PA | 1..432 | 1..432 | 2192 | 100 | Plus |
CG32820-PB | 520 | CG32820-PB | 139..501 | 22..391 | 282 | 23.9 | Plus |
CG32819-PB | 520 | CG32819-PB | 139..501 | 22..391 | 282 | 23.9 | Plus |
CG17450-PC | 520 | CG17450-PC | 139..501 | 22..391 | 282 | 23.9 | Plus |