Clone BO07988 Report

Search the DGRC for BO07988

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:79
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG3085-RA
Protein status:BO07988.pep: validated full length
Sequenced Size:1330

Clone Sequence Records

BO07988.3prime Sequence

992 bp (845 high quality bases) assembled on 2006-01-06

> BO07988.3prime
ATGGTCTAGAAAGCTTGCGTCTTTGGGAATCTCGTTCTCCATGCGAGTGA
GCGTTATGTTCCTGTCCGTCTGCGAGGCGTTGGCCACCTTGGAGCCGAAC
TCGCCGCCCCGGAGACGCATGCGCAAGTCCAGGGCCCTGATGTCCGTCAT
CAGCGAGTGCTGCTTGTTCTCCAGATCCACGTCGATTCGCTTGCCGTGCT
CCTCCAGCAGACTAAAGTTGGTCTTGCTCTCGTCGATCTTGACCTGCAGT
CGGCGTCGTATCTCTCGCAGCTTCTCCACCTCCAAGCAGAGCATGTCGTG
CGCCTGGTCCATGCACAGTTCCATGCCCGACCTCTGGGCACGATTCTCCA
GGCGTGTCTCGGCCAGCTTCAGTGCATCCGTCTTGTCACGCAGCGCATTC
TCCGAGGTGCGGATCTCGCACATGGCCTTCTCCATCTCCTCCTTCATCTT
GAGCTGCTGCCACTCCAGTTCGTTTCTGGCCCGCTGCGTCTCGAAGATCC
GTTTGCGGATGGTGTGCTCCGCCCGCTCCTGCTGCGACTGCAGCATGTTG
CGCGCCTTTTCGCGGCACACGAACAAAGCCTCCCGAATGGCGTACGTGTC
GGCCAGCTCATTCTCCGCCAGCAGCTTTATGTTCTTCACGTTCTCCAGCC
AGGACTCGTAGGAACAGGAGTTCTTGGGATTTCTCGTGGGATCCGGCTTG
TATGAGATATTGGCCGAGTTGCGATCGAGCGCCAGCTGTGAGTTGTCCAG
CTGCACCGCCTCCACCTTGAACTCGATCTCCAGGCCGATCTTGAAGCGCA
CTTCCTCCAGACGATTGAGCTTCTCCCACGCCTTCTGGCATCGATCGGCC
AGCAGGCGCTGGTTGTTCTCCAGCACGACCAGTTCGTTCTTGATCTCGGT
GTCGGCCTCATCGTAGGTGATCTCCCATCCGAGGCGACCGTCCCTTATGG
TCAGGCACTCGGCTATCACGGAAATCGGACCTGCCAACGCCT

BO07988.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG3085-PA 1299 CG3085-RA 323..1296 992..19 4845 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3085-RB 1749 CG3085-RB 590..1563 992..19 4855 99.9 Minus
CG3085-RA 1670 CG3085-RA 511..1484 992..19 4855 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23076020..23076671 670..19 3260 100 Minus
2R 25286936 2R 23075641..23075962 992..671 1595 99.7 Minus
Blast to na_te.dros performed on 2015-02-13 16:32:55 has no hits.

BO07988.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:34:35 Download gff for BO07988.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3085-PA 323..1299 18..992 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:23:29 Download gff for BO07988.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3085-PA 323..1299 18..992 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:13:30 Download gff for BO07988.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3085-RA 511..1491 11..992 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 19:16:17 Download gff for BO07988.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3085-RA 511..1491 11..992 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:16:17 Download gff for BO07988.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23075641..23075962 671..992 99 -> Minus
2R 23076020..23076678 11..670 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:13:30 Download gff for BO07988.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18963164..18963485 671..992 99 -> Minus
arm_2R 18963543..18964201 11..670 99   Minus

BO07988.5prime Sequence

900 bp (824 high quality bases) assembled on 2006-01-06

> BO07988.5prime
GAAGTTATCAGTCGACATGGCCTTCCGCTCGGTGGTTACGATGGAGAAGC
CGCTCCAGCACATTTCGCTGACGGACTGGTATGCCCGTGTGAACCAGATG
CGGAATGTGGCGGATGCCCGGAGGTCGGACGCCTTCGCCATCCGCCACTC
ATCCCGATCCTTGAGGAACGAGACGCGGATCGAGGGCGACTGGGCCAACT
ACGAGACAAATGAGGCTCTGACCGATCGCATCTCCGAGTTGAATCGCTGG
CGGGATATCATTTCCAAGTCCTTCGAGAAGATCGAGCGCGAGATATTCAT
GCTGCAGGAGGAGAAGAATGCCACGGAACGGGAGCTGGAGGCGTTGGCAG
GTCCGATTTCCGTGATAGCCGAGTGCCTGACCATAAGGGACGGTCGCCTC
GGATCGGAGATCACCTACGATGAGGCCGACACCGAGATCAAGAACGAACT
GGTCGTGCTGGAGAACAACCAGCGCCTGCTGGCCGATCGATGCCAGAAGG
CGTGGGAGAAGCTCAATCGTCTGGAGGAAGTGCGCTTCAAGATCGGCCTG
GAGATCGAGTTCAAGGTGGAGGCGGTGCAGCTGGACAACTCACAGCTGGC
GCTCGATCGCAACTCGGCCAATATCTCATACAAGCCGGATCCCACGAGAA
ATCCCAAGAACTCCTGTTCCTACGAGTCCTGGCTGGAGAACGTGAAGAAC
ATAAAGCTGCTGGCGGAGAATGAGCTGGCCGACACGTACGCCATTCGGGA
GGCTTTGTTCGTGTGCCGCGAAAAGGCGCGCAACATGCTGCAGTCGCAGC
AGGAGCGGGCGGAGCACACCATCCGCAAACGGATCTTCGAGACGCAGCGG
GCCAGAAACGAACTGGAGTGGCAGCAGCTCAAGATGAAGGAGGAGATGGG

BO07988.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG3085-PA 1299 CG3085-RA 1..883 17..899 4415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3085-RB 1749 CG3085-RB 268..1150 17..899 4415 100 Plus
CG3085-RA 1670 CG3085-RA 189..1071 17..899 4415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23075530..23075962 228..660 2165 100 Plus
2R 25286936 2R 23076020..23076258 661..899 1195 100 Plus
2R 25286936 2R 23075255..23075466 17..228 1060 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:51:33 has no hits.

BO07988.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:34:36 Download gff for BO07988.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3085-PA 1..883 17..900 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:23:31 Download gff for BO07988.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3085-PA 1..883 17..900 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:45:32 Download gff for BO07988.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3085-RA 185..1071 9..900 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:29:06 Download gff for BO07988.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3085-RA 185..1071 9..900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:29:06 Download gff for BO07988.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23075251..23075466 9..228 98 -> Plus
2R 23075531..23075962 229..660 100 -> Plus
2R 23076020..23076258 661..900 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:45:32 Download gff for BO07988.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18962774..18962989 9..228 98 -> Plus
arm_2R 18963054..18963485 229..660 100 -> Plus
arm_2R 18963543..18963781 661..900 99   Plus

BO07988.complete Sequence

1330 bp (1330 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631007

> BO07988.complete
GAAGTTATCAGTCGACATGGCCTTCCGCTCGGTGGTTACGATGGAGAAGC
CGCTCCAGCACATTTCGCTGACGGACTGGTATGCCCGTGTGAACCAGATG
CGGAATGTGGCGGATGCCCGGAGGTCGGACGCCTTCGCCATCCGCCACTC
ATCCCGATCCTTGAGGAACGAGACGCGGATCGAGGGCGACTGGGCCAACT
ACGAGACAAATGAGGCTCTGACCGATCGCATCTCCGAGTTGAATCGCTGG
CGGGATATCATTTCCAAGTCCTTCGAGAAGATCGAGCGCGAGATATTCAT
GCTGCAGGAGGAGAAGAATGCCACGGAACGGGAGCTGGAGGCGTTGGCAG
GTCCGATTTCCGTGATAGCCGAGTGCCTGACCATAAGGGACGGTCGCCTC
GGATCGGAGATCACCTACGATGAGGCCGACACCGAGATCAAGAACGAACT
GGTCGTGCTGGAGAACAACCAGCGCCTGCTGGCCGATCGATGCCAGAAGG
CGTGGGAGAAGCTCAATCGTCTGGAGGAAGTGCGCTTCAAGATCGGCCTG
GAGATCGAGTTCAAGGTGGAGGCGGTGCAGCTGGACAACTCACAGCTGGC
GCTCGATCGCAACTCGGCCAATATCTCATACAAGCCGGATCCCACGAGAA
ATCCCAAGAACTCCTGTTCCTACGAGTCCTGGCTGGAGAACGTGAAGAAC
ATAAAGCTGCTGGCGGAGAATGAGCTGGCCGACACGTACGCCATTCGGGA
GGCTTTGTTCGTGTGCCGCGAAAAGGCGCGCAACATGCTGCAGTCGCAGC
AGGAGCGGGCGGAGCACACCATCCGCAAACGGATCTTCGAGACGCAGCGG
GCCAGAAACGAACTGGAGTGGCAGCAGCTCAAGATGAAGGAGGAGATGGA
GAAGGCCATGTGCGAGATCCGCACCTCGGAGAATGCGCTGCGTGACAAGA
CGGATGCACTGAAGCTGGCCGAGACACGCCTGGAGAATCGTGCCCAGAGG
TCGGGCATGGAACTGTGCATGGACCAGGCGCACGACATGCTCTGCTTGGA
GGTGGAGAAGCTGCGAGAGATACGACGCCGACTGCAGGTCAAGATCGACG
AGAGCAAGACCAACTTTAGTCTGCTGGAGGAGCACGGCAAGCGAATCGAC
GTGGATCTGGAGAACAAGCAGCACTCGCTGATGACGGACATCAGGGCCCT
GGACTTGCGCATGCGTCTCCGGGGCGGCGAGTTCGGCTCCAAGGTGGCCA
ACGCCTCGCAGACGGACAGGAACATAACGCTCACTCGCATGGAGAACGAG
ATTCCCAAAGACGCAAGCTTTCTAGACCAT

BO07988.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG3085-RB 1299 CG3085-PB 1..1296 17..1312 6480 100 Plus
CG3085-RA 1299 CG3085-PA 1..1296 17..1312 6480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG3085-RB 1749 CG3085-RB 268..1563 17..1312 6480 100 Plus
CG3085-RA 1670 CG3085-RA 189..1484 17..1312 6480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:49:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23076020..23076671 661..1312 3260 100 Plus
2R 25286936 2R 23075530..23075962 228..660 2165 100 Plus
2R 25286936 2R 23075255..23075466 17..228 1060 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:49:44 has no hits.

BO07988.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:50 Download gff for BO07988.complete
Subject Subject Range Query Range Percent Splice Strand
CG3085-RA 1..1299 17..1313 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:09 Download gff for BO07988.complete
Subject Subject Range Query Range Percent Splice Strand
CG3085-RA 183..1489 9..1320 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:36 Download gff for BO07988.complete
Subject Subject Range Query Range Percent Splice Strand
CG3085-RA 189..1484 17..1314 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:50 Download gff for BO07988.complete
Subject Subject Range Query Range Percent Splice Strand
CG3085-RA 183..1489 9..1320 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:58 Download gff for BO07988.complete
Subject Subject Range Query Range Percent Splice Strand
CG3085-RA 189..1484 17..1314 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:27:58 Download gff for BO07988.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23075531..23075962 229..660 100 -> Plus
2R 23075255..23075466 17..228 100 -> Plus
2R 23076020..23076671 661..1314 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:36 Download gff for BO07988.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18962778..18962989 17..228 100 -> Plus
arm_2R 18963054..18963485 229..660 100 -> Plus
arm_2R 18963543..18964194 661..1314 99   Plus

BO07988.pep Sequence

Translation from 16 to 1330

> BO07988.pep
MAFRSVVTMEKPLQHISLTDWYARVNQMRNVADARRSDAFAIRHSSRSLR
NETRIEGDWANYETNEALTDRISELNRWRDIISKSFEKIEREIFMLQEEK
NATERELEALAGPISVIAECLTIRDGRLGSEITYDEADTEIKNELVVLEN
NQRLLADRCQKAWEKLNRLEEVRFKIGLEIEFKVEAVQLDNSQLALDRNS
ANISYKPDPTRNPKNSCSYESWLENVKNIKLLAENELADTYAIREALFVC
REKARNMLQSQQERAEHTIRKRIFETQRARNELEWQQLKMKEEMEKAMCE
IRTSENALRDKTDALKLAETRLENRAQRSGMELCMDQAHDMLCLEVEKLR
EIRRRLQVKIDESKTNFSLLEEHGKRIDVDLENKQHSLMTDIRALDLRMR
LRGGEFGSKVANASQTDRNITLTRMENEIPKDASFLDH

BO07988.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG3085-PB 432 CG3085-PB 1..432 1..432 2192 100 Plus
CG3085-PA 432 CG3085-PA 1..432 1..432 2192 100 Plus
CG32820-PB 520 CG32820-PB 139..501 22..391 282 23.9 Plus
CG32819-PB 520 CG32819-PB 139..501 22..391 282 23.9 Plus
CG17450-PC 520 CG17450-PC 139..501 22..391 282 23.9 Plus