Clone Sequence Records
BO07993.3prime Sequence
924 bp (844 high quality bases) assembled on 2006-01-06
> BO07993.3prime
ATGGTCTAGAAAGCTTGCTTTGCTCTTGGCCAGCTGACTCTGAGCCGAGG
TGGTCAGCTTGGAGACGACCCGCGTTAGGGCCCGATTCTCGGCTCGCAGA
CGATCGTTCTCAGTCTTTAGCTTCTGCAATAGCTTGAGCTCTTCTTCCAA
CTCGGAAAGCTTGCGTTCCATAGCTCTTCTTTCGCGTTTCTCAAGTTCAG
ATAGTGAATTTTTCGTTGTGGCATTGGCGAATCTCTCGAGTGTTGCACGT
GTCTGGACGGCTTCATCGTCCTTCTGCTTGAGCATCTGCCTCAGCTTATC
GTTCTCCAATTTTTCCGCTTCCCAGAGCGCCTTGTAGTCAATGCCATCGC
CATTCTCCGTCTTGTCATTGCTGCTGGAGCTCTTTGACTCGCTGGTGGTG
GCCGTACTCGCGGTGCTGCCCAGCCGGGAACGGGATGTCCGCTCACTGCC
ACTTTCATATCCTTCACTCTTCTCTGAGGAAGCACTAATGGATCTCTGTG
CCGCACTCTTCGACCGCGTGCGATTGCGAGACTTGCGCTCCTGTTCCCGC
AAAGAGTTGCTCCTTGTGGCTGCGATGGCGGCCACAGTGGCTCCGGCACT
GGTTACCCCATTCGAGGATGGACCACCATAGGCACCATTCAGGCTGCTAT
TTGATGCTGACAGTGATTTGGTCTTCAGTAAACGAGAACTCTTGAACGAA
TTGGACGAACTCAAACCGGGCGACTTGAAGGTCAGCGAAGCGGTGGTCAC
ACCCTTATCATAACTACTCGAATAGGGGCTGACATATCGATCGCTTGTGG
AGTACGAAGATCCCGCCGAGGAATAGGAACTGGGATTGTACCTGGAACTG
TCGTATCCACCACCACGCTGCCATAAGACCTCCGACCAGCACCTCCTCCG
CCCGTACAGCTCTCCCTCGAGCTG
BO07993.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32156-PE | 1134 | Mbs-RE | 284..1131 | 866..19 | 4240 | 100 | Minus |
| CG32156-PC | 3438 | Mbs-RC | 3031..3352 | 453..132 | 1610 | 100 | Minus |
| CG32156-PA | 3309 | Mbs-RA | 2902..3223 | 453..132 | 1610 | 100 | Minus |
| CG32156-PB | 3309 | Mbs-RB | 2902..3223 | 453..132 | 1610 | 100 | Minus |
| CG32156-PE | 1134 | Mbs-RE | 247..283 | 902..866 | 160 | 97.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:29:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mbs-RE | 1906 | CG32156-RE | 344..1250 | 924..19 | 4450 | 99.6 | Minus |
| Mbs-RF | 2404 | CG32156-RF | 344..1137 | 924..132 | 3885 | 99.5 | Minus |
| Mbs-RQ | 4482 | CG32156-RQ | 3392..3826 | 453..19 | 2175 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:29:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16076236..16076648 | 866..454 | 2065 | 100 | Minus |
| 3L | 28110227 | 3L | 16076982..16077124 | 453..311 | 715 | 100 | Minus |
| 3L | 28110227 | 3L | 16078818..16078933 | 134..19 | 580 | 100 | Minus |
| 3L | 28110227 | 3L | 16077192..16077282 | 310..220 | 455 | 100 | Minus |
| 3L | 28110227 | 3L | 16077723..16077809 | 219..133 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:29:55 has no hits.
BO07993.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:34:44 Download gff for
BO07993.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mbs-PE | 225..1134 | 18..924 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:23:41 Download gff for
BO07993.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32156-PE | 225..1134 | 18..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:09:32 Download gff for
BO07993.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mbs-RE | 344..1255 | 13..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:41:13 Download gff for
BO07993.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mbs-RE | 344..1255 | 13..924 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:41:13 Download gff for
BO07993.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16075712..16075764 | 872..924 | 94 | -> | Minus |
| 3L | 16076230..16076648 | 454..871 | 99 | -> | Minus |
| 3L | 16076982..16077124 | 311..453 | 100 | -> | Minus |
| 3L | 16077192..16077282 | 220..310 | 100 | -> | Minus |
| 3L | 16077723..16077809 | 133..219 | 100 | -> | Minus |
| 3L | 16078820..16078938 | 13..132 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:09:32 Download gff for
BO07993.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16068812..16068864 | 872..924 | 94 | -> | Minus |
| arm_3L | 16069330..16069748 | 454..871 | 99 | -> | Minus |
| arm_3L | 16070082..16070224 | 311..453 | 100 | -> | Minus |
| arm_3L | 16070292..16070382 | 220..310 | 100 | -> | Minus |
| arm_3L | 16070823..16070909 | 133..219 | 100 | -> | Minus |
| arm_3L | 16071920..16072038 | 13..132 | 97 | | Minus |
BO07993.5prime Sequence
900 bp (759 high quality bases) assembled on 2006-01-06
> BO07993.5prime
GAAGTTATCCGTCGACATGTCCTTTCGCTCGAGATCAAGAACCCAGGCGC
CCCTGTCCAGTCGGCGGCGATCGTTGTCCTCCAGTTCGCGAATGGCTCCA
TCAAGTGGTGGTTCCGGGGCCTATAACTACAACGGAAGTAGCTATAGCAG
CTCCGGCAGCACTGGTCGTCCCCTGAGCACGGGCTACTTTCCCAGCAGCA
GTAGCGCCTCCAGTTACCAGAGTCCCTATGCCAGTGTGTACAGCTCGAGG
GAGAGCTTGTACGGCGGAGGAGGTGCTGGTCGGAGTTCTTATGGCAGCGG
TGGTGGTGGATACGACAGTTCCAGGTACAATCCCAGTTCCTATTCCTCGG
CGGGATCTTCGTACTCCACAAGCGATCGATATGTCAGCCCCTATTCGAGT
AGTTATGATAAGGGTGTGACCACCGCTTCGCTGACCTTCAAGTCGCCCGG
TTTGAGTTCGTCCAATTCGTTCAAGAGTTCTCGTTTACTGAAGACCAAAT
CACTGTCAGCATCAAATAGCAGCCTGAATGGTGCCTATGGTGGTCCATCC
TCGAATGGGGTAACCAGTGCCGGAGCCACTGTGGCCGCCATCGCAGCCAC
AAGGAGCAACTCTTTGCGGGAACAGGAGCGCAAGTCTCGCAATCGCACGC
GGTCGAAGAGTGCGGCACAGAGATCCATTAGTGCTTCCTCAGAGAAGAGT
GAAGGATATGAAAGTGGCAGTGAGCGGACATCCCGTTCCCGGCTGGGCAG
CACCGCGAGTACGGCCACCACCAGCGAGTCAAAGAGCTCCAGCAGCAATG
ACAAGACGGAGAATGGCGATGGCATTGACTACAAGGCGCTCTGGGAAGCG
GAAAAATTGGAGAACGATAAGCTGAGGCAGATGCTCAAGCAGAAAGACGA
BO07993.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32156-PE | 1134 | Mbs-RE | 1..884 | 17..900 | 4395 | 99.8 | Plus |
| CG32156-PC | 3438 | Mbs-RC | 3031..3218 | 713..900 | 915 | 99.4 | Plus |
| CG32156-PA | 3309 | Mbs-RA | 2902..3089 | 713..900 | 915 | 99.4 | Plus |
| CG32156-PB | 3309 | Mbs-RB | 2902..3089 | 713..900 | 915 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:18:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mbs-RF | 2404 | CG32156-RF | 116..1003 | 13..900 | 4410 | 99.8 | Plus |
| Mbs-RE | 1906 | CG32156-RE | 116..1003 | 13..900 | 4410 | 99.8 | Plus |
| Mbs-RQ | 4482 | CG32156-RQ | 3392..3579 | 713..900 | 925 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:18:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16076229..16076648 | 293..712 | 2100 | 100 | Plus |
| 3L | 28110227 | 3L | 16075484..16075765 | 13..294 | 1395 | 99.6 | Plus |
| 3L | 28110227 | 3L | 16076982..16077124 | 713..855 | 715 | 100 | Plus |
| 3L | 28110227 | 3L | 16077192..16077236 | 856..900 | 210 | 97.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:18:18 has no hits.
BO07993.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:34:45 Download gff for
BO07993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mbs-PE | 1..883 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:23:42 Download gff for
BO07993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32156-PE | 1..883 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:31:31 Download gff for
BO07993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mbs-RE | 111..1002 | 7..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:42:17 Download gff for
BO07993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mbs-RE | 111..1002 | 7..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:42:17 Download gff for
BO07993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16075479..16075764 | 7..293 | 98 | -> | Plus |
| 3L | 16076230..16076648 | 294..712 | 100 | -> | Plus |
| 3L | 16076982..16077124 | 713..855 | 100 | -> | Plus |
| 3L | 16077192..16077235 | 856..899 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:31:31 Download gff for
BO07993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16068579..16068864 | 7..293 | 98 | -> | Plus |
| arm_3L | 16069330..16069748 | 294..712 | 100 | -> | Plus |
| arm_3L | 16070082..16070224 | 713..855 | 100 | -> | Plus |
| arm_3L | 16070292..16070335 | 856..899 | 97 | | Plus |
BO07993.complete Sequence
1165 bp assembled on 2008-08-15
GenBank Submission: FJ631009
> BO07993.complete
GAAGTTATCCGTCGACATGTCCTTTCGCTCGAGATCAAGAACCCAGGCGC
CCCTGTCCAGTCGGCGGCGATCGTTGTCCTCCAGTTCGCGAATGGCTCCA
TCAAGTGGTGGTTCCGGGGCCTATAACTACAACGGAAGTAGCTATAGCAG
CTCCGGCAGCACTGGTCGTCCCCTGAGCACGGGCTACTTTCCCAGCAGCA
GTAGCGCCTCCAGTTACCAGAGTCCCTATGCCAGTGTGTACAGCTCGAGG
GAGAGCTTGTACGGCGGAGGAGGTGCTGGTCGGAGTTCTTATGGCAGCGG
TGGTGGTGGATACGACAGTTCCAGGTACAATCCCAGTTCCTATTCCTCGG
CGGGATCTTCGTACTCCACAAGCGATCGATATGTCAGCCCCTATTCGAGT
AGTTATGATAAGGGTGTGACCACCGCTTCGCTGACCTTCAAGTCGCCCGG
TTTGAGTTCGTCCAATTCGTTCAAGAGTTCTCGTTTACTGAAGACCAAAT
CACTGTCAGCATCAAATAGCAGCCTGAATGGTGCCTATGGTGGTCCATCC
TCGAATGGGGTAACCAGTGCCGGAGCCACTGTGGCCGCCATCGCAGCCAC
AAGGAGCAACTCTTTGCGGGAACAGGAGCGCAAGTCTCGCAATCGCACGC
GGTCGAAGAGTGCGGCACAGAGATCCATTAGTGCTTCCTCAGAGAAGAGT
GAAGGATATGAAAGTGGCAGTGAGCGGACATCCCGTTCCCGGCTGGGCAG
CACCGCGAGTACGGCCACCACCAGCGAGTCAAAGAGCTCCAGCAGCAATG
ACAAGACGGAGAATGGCGATGGCATTGACTACAAGGCGCTCTGGGAAGCG
GAAAAATTGGAGAACGATAAGCTGAGGCAGATGCTCAAGCAGAAGGACGA
TGAAGCCGTCCAGACACGTGCAACACTCGAGAGATTCGCCAATGCCACAA
CGAAAAATTCACTATCTGAACTTGAGAAACGCGAAAGAAGAGCTATGGAA
CGCAAGCTTTCCGAGTTGGAAGAAGAGCTCAAGCTATTGCAGAAGCTAAA
GACTGAGAACGATCGTCTGCGAGCCGAGAATCGGGCCCTAACGCGGGTCG
TCTCCAAGCTGACCACCTCGGCTCAGAGTCAGCTGGCCAAGAGCAAAGCA
AGCTTTCTAGACCAT
BO07993.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:02:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mbs-RE | 1134 | CG32156-PE | 1..1131 | 17..1147 | 5655 | 100 | Plus |
| Mbs-RF | 1104 | CG32156-PF | 1..1018 | 17..1034 | 5090 | 100 | Plus |
| Mbs-RQ | 3336 | CG32156-PQ | 2899..3333 | 713..1147 | 2175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:02:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mbs-RE | 1906 | CG32156-RE | 116..1250 | 13..1147 | 5660 | 99.9 | Plus |
| Mbs-RF | 2404 | CG32156-RF | 116..1137 | 13..1034 | 5095 | 99.9 | Plus |
| Mbs-RQ | 4482 | CG32156-RQ | 3392..3826 | 713..1147 | 2175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:02:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16076229..16076648 | 293..712 | 2100 | 100 | Plus |
| 3L | 28110227 | 3L | 16075484..16075765 | 13..294 | 1395 | 99.6 | Plus |
| 3L | 28110227 | 3L | 16076982..16077124 | 713..855 | 715 | 100 | Plus |
| 3L | 28110227 | 3L | 16078818..16078933 | 1032..1147 | 580 | 100 | Plus |
| 3L | 28110227 | 3L | 16077192..16077282 | 856..946 | 455 | 100 | Plus |
| 3L | 28110227 | 3L | 16077723..16077809 | 947..1033 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:02:24 has no hits.
BO07993.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:52 Download gff for
BO07993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mbs-RE | 110..1254 | 7..1153 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:26:19 Download gff for
BO07993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mbs-RE | 120..1250 | 17..1149 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:43 Download gff for
BO07993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mbs-RE | 119..1249 | 17..1149 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:46 Download gff for
BO07993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mbs-RE | 120..1250 | 17..1149 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:46 Download gff for
BO07993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16075488..16075764 | 17..293 | 100 | -> | Plus |
| 3L | 16076230..16076648 | 294..712 | 100 | -> | Plus |
| 3L | 16076982..16077124 | 713..855 | 100 | -> | Plus |
| 3L | 16077192..16077282 | 856..946 | 100 | -> | Plus |
| 3L | 16077723..16077809 | 947..1033 | 100 | -> | Plus |
| 3L | 16078820..16078933 | 1034..1149 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:26:19 Download gff for
BO07993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16070823..16070909 | 947..1033 | 100 | -> | Plus |
| arm_3L | 16071920..16072033 | 1034..1149 | 98 | | Plus |
| arm_3L | 16068588..16068864 | 17..293 | 100 | -> | Plus |
| arm_3L | 16069330..16069748 | 294..712 | 100 | -> | Plus |
| arm_3L | 16070082..16070224 | 713..855 | 100 | -> | Plus |
| arm_3L | 16070292..16070382 | 856..946 | 100 | -> | Plus |
BO07993.pep Sequence
Translation from 16 to 1165
> BO07993.pep
MSFRSRSRTQAPLSSRRRSLSSSSRMAPSSGGSGAYNYNGSSYSSSGSTG
RPLSTGYFPSSSSASSYQSPYASVYSSRESLYGGGGAGRSSYGSGGGGYD
SSRYNPSSYSSAGSSYSTSDRYVSPYSSSYDKGVTTASLTFKSPGLSSSN
SFKSSRLLKTKSLSASNSSLNGAYGGPSSNGVTSAGATVAAIAATRSNSL
REQERKSRNRTRSKSAAQRSISASSEKSEGYESGSERTSRSRLGSTASTA
TTSESKSSSSNDKTENGDGIDYKALWEAEKLENDKLRQMLKQKDDEAVQT
RATLERFANATTKNSLSELEKRERRAMERKLSELEEELKLLQKLKTENDR
LRAENRALTRVVSKLTTSAQSQLAKSKASFLDH
BO07993.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:31:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mbs-PE | 377 | CG32156-PE | 1..377 | 1..377 | 1843 | 100 | Plus |
| Mbs-PF | 367 | CG32156-PF | 1..366 | 1..366 | 1733 | 96.4 | Plus |
| Mbs-PQ | 1111 | CG32156-PQ | 686..1111 | 19..377 | 745 | 47.7 | Plus |
| Mbs-PJ | 1101 | CG32156-PJ | 686..1100 | 19..366 | 635 | 43.3 | Plus |
| Mbs-PI | 1144 | CG32156-PI | 729..1143 | 19..366 | 635 | 43.3 | Plus |
