Clone Sequence Records
BO07994.3prime Sequence
919 bp (808 high quality bases) assembled on 2006-01-06
> BO07994.3prime
ATGGTCTAGAAAGCTTGCTAAGAATGGATTGTTGGTGTTCATGGCGCCGC
TGGCTGCAAAGGGATTGTTGGCCATCACAGGAGCGGGTTGCATGCTGCCG
AAGCCGCAGCCGTTGGGCAGACCCTGCGAGATGGCGAACCCGTTGTTGTT
GAAGTTGAAGAAGCTCTGCTGTTGCTGCTGCTGCTGCTGGAGGAGATGGT
GCCCCATCTGCTGCTGGGAACTGCTGCCGTAGGCATTTGGTATGAGCGTC
AACTGGCCATAGAGATTCTGCTGGTGCTGCTGCTGTTGCTGCTGCTGGAA
TGGATTCACCACATGGCTGCTGAGCTGCTGCTGTTGCTGGCCCTTGAAGG
GATTTGGATTGTTGTTGAGGGCTCCACCAAAGGCATCTGTGGCCTGAACA
TTGCCACTGGTGGGCGTGGGCGTCTCTGTGGCGCTTTCGCTGGCCTTCAG
TTCTCGCAGCTGCTCGTCGAGATCCTTAAGAGCGGCATATCGATCCTCAC
TGGGCGCCATCGCTGCATTTCCGCCCTTGGGCGGACTGGTCGTATGGCCG
TTCTGCAAGGGAGCACCCACTGCATTGTAGATGGGAGCGTGATCGAAGTC
GGCAAAGTTCTCAGTGCCCTGATGACCATTGCCATTGAGGAGCTGCTGCT
GATGCAGCTGCTGCTGCAACTGCTGTTGCTGCTGGAGATGAGCTGCCCGG
ATGGGCTGCACCTTGGCGTAGCCATTGCTGGAACCCACTGAGGACACGGA
CGACACCGCCGGCGATCCTGTGGAACGCGCCGATGTGGCGTCGAAAATGT
TGGCCGAGCCAAAGTCAGCCACAAAGTCGCAGTCCGCACCGAAGCCATTG
CTAGCACAACTGCTGGTGTCGGAAAGAGCTCCAGTGGATGTGGAACCGGC
GCTGTTCAGGCTGCTCAAT
BO07994.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3365-PC | 1344 | drongo-RC | 441..1341 | 919..19 | 4505 | 100 | Minus |
| CG3365-PB | 1809 | drongo-RB | 651..1515 | 919..55 | 4325 | 100 | Minus |
| CG3365-PA | 1599 | drongo-RA | 441..1305 | 919..55 | 4325 | 100 | Minus |
| CG3365-PB | 1809 | drongo-RB | 1516..1546 | 49..19 | 155 | 100 | Minus |
| CG3365-PA | 1599 | drongo-RA | 1306..1336 | 49..19 | 155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:34:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| drongo-RH | 3518 | CG3365-RH | 1654..2554 | 919..19 | 4505 | 100 | Minus |
| drongo-RC | 2672 | CG3365-RC | 811..1711 | 919..19 | 4505 | 100 | Minus |
| drongo-RI | 2625 | CG3365-RI | 1654..2519 | 919..54 | 4330 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:34:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 836544..836898 | 565..919 | 1775 | 100 | Plus |
| 2L | 23513712 | 2L | 834973..835292 | 54..373 | 1600 | 100 | Plus |
| 2L | 23513712 | 2L | 835353..835548 | 372..567 | 980 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:34:38 has no hits.
BO07994.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:34:46 Download gff for
BO07994.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3365-PC | 441..1344 | 16..919 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:23:44 Download gff for
BO07994.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3365-PC | 441..1344 | 16..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:27:18 Download gff for
BO07994.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drongo-RC | 811..1711 | 19..919 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:51:49 Download gff for
BO07994.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drongo-RC | 811..1711 | 19..919 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:51:49 Download gff for
BO07994.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 834548..834583 | 19..54 | 100 | <- | Plus |
| 2L | 834974..835290 | 55..371 | 100 | <- | Plus |
| 2L | 835353..835547 | 372..566 | 100 | <- | Plus |
| 2L | 836546..836898 | 567..919 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:27:18 Download gff for
BO07994.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 834548..834583 | 19..54 | 100 | <- | Plus |
| arm_2L | 834974..835290 | 55..371 | 100 | <- | Plus |
| arm_2L | 835353..835547 | 372..566 | 100 | <- | Plus |
| arm_2L | 836546..836898 | 567..919 | 100 | | Plus |
BO07994.5prime Sequence
928 bp (812 high quality bases) assembled on 2006-01-06
> BO07994.5prime
GAAGTTATCAGTCGACATGGCCACATTCACACAGGACGAGATCGACTTCC
TGCGCAGCCATGGCAACGAGCTGTGTGCCAAGACCTGGCTGGGATTGTGG
GATCCGAAGCGGGCTGTGCACCAGCAGGAGCAGCGCGAACTGATGATGGA
CAAGTATGAGCGGAAGCGATACTACCTGGAGCCGGCCAGTCCTCTTAAGT
CGCTGGCCAATGCGGTCAACCTGAAGTCGTCTGCTCCGGCGACGAACCAC
ACTCAGAATGGCCACCAAAATGGGTATGCCAGCATCCATTTGACGCCTCC
TGCTGCCCAGCGGACCTCGGCCAATGGATTGCAGAAGGTGGCCAACTCGT
CGAGTAACTCTTCTGGAAAGACCTCATCCTCGATCAGTAGGCCACACTAT
AATCACCAGAACAACAGCCAAAACAACAATCACGATGCCTTTGGCCTGGG
TGGCGGATTGAGCAGCCTGAACAGCGCCGGTTCCACATCCACTGGAGCTC
TTTCCGACACCAGCAGTTGTGCTAGCAATGGCTTCGGTGCGGACTGCGAC
TTTGTGGCTGACTTTGGCTCGGCCAACATTTTCGACGCCACATCGGCGCG
TTCCACAGGATCGCCGGCGGTGTCGTCCGTGTCCTCAGTGGGTTCCAGCA
ATGGCTACGCCAAGGTGCAGCCCATCCGGGCAGCTCATCTCCAGCAGCAA
CAGCAGTTGCAGCAGCAGCTGCATCAGCAGCAGCTCCTCAATGGCAATGG
TCATCANGGCACTGAGAACTTTGCCGACTTCGATCACGCTCCCATCTACA
ATGCAGTGGGTGCTCCCTTGCAGAACGGCCATACGACCAGTCCGCCCAAG
GGCGGAAATGCAGCGATGGCGCCCAGTGAGGATCGATATGCCGCTCTTAA
GGATCTCGACGAGCAGCTGCGAGAACTG
BO07994.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:14:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3365-PB | 1809 | drongo-RB | 211..1122 | 17..928 | 4541 | 99.8 | Plus |
| CG3365-PA | 1599 | drongo-RA | 1..912 | 17..928 | 4541 | 99.8 | Plus |
| CG3365-PC | 1344 | drongo-RC | 1..912 | 17..928 | 4541 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:30:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| drongo-RI | 2625 | CG3365-RI | 1214..2125 | 17..928 | 4549 | 99.9 | Plus |
| drongo-RH | 3518 | CG3365-RH | 1214..2125 | 17..928 | 4549 | 99.9 | Plus |
| drongo-RC | 2672 | CG3365-RC | 371..1282 | 17..928 | 4549 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:30:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 836544..837338 | 811..17 | 3964 | 99.9 | Minus |
| 2L | 23513712 | 2L | 835429..835548 | 928..809 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:30:23 has no hits.
BO07994.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:34:47 Download gff for
BO07994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3365-PC | 1..912 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:23:45 Download gff for
BO07994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3365-PC | 1..912 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:09:37 Download gff for
BO07994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drongo-RC | 365..1282 | 7..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:42:24 Download gff for
BO07994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drongo-RC | 365..1282 | 7..928 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:42:24 Download gff for
BO07994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 835429..835547 | 810..928 | 100 | <- | Minus |
| 2L | 836546..837344 | 7..809 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:09:37 Download gff for
BO07994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 835429..835547 | 810..928 | 100 | <- | Minus |
| arm_2L | 836546..837344 | 7..809 | 99 | | Minus |
BO07994.complete Sequence
1375 bp (1375 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631010
> BO07994.complete
GAAGTTATCAGTCGACATGGCCACATTCACACAGGACGAGATCGACTTCC
TGCGCAGCCATGGCAACGAGCTGTGTGCCAAGACCTGGCTGGGATTGTGG
GATCCGAAGCGGGCTGTGCACCAGCAGGAGCAGCGCGAACTGATGATGGA
CAAGTATGAGCGGAAGCGATACTACCTGGAGCCGGCCAGTCCTCTTAAGT
CGCTGGCCAATGCGGTCAACCTGAAGTCGTCTGCTCCGGCGACGAACCAC
ACTCAGAATGGCCACCAAAATGGGTATGCCAGCATCCATTTGACGCCTCC
TGCTGCCCAGCGGACCTCGGCCAATGGATTGCAGAAGGTGGCCAACTCGT
CGAGTAACTCTTCTGGAAAGACCTCATCCTCGATCAGTAGGCCACACTAT
AATCACCAGAACAACAGCCAAAACAACAATCACGATGCCTTTGGCCTGGG
TGGCGGATTGAGCAGCCTGAACAGCGCCGGTTCCACATCCACTGGAGCTC
TTTCCGACACCAGCAGTTGTGCTAGCAATGGCTTCGGTGCGGACTGCGAC
TTTGTGGCTGACTTTGGCTCGGCCAACATTTTCGACGCCACATCGGCGCG
TTCCACAGGATCGCCGGCGGTGTCGTCCGTGTCCTCAGTGGGTTCCAGCA
ATGGCTACGCCAAGGTGCAGCCCATCCGGGCAGCTCATCTCCAGCAGCAA
CAGCAGTTGCAGCAGCAGCTGCATCAGCAGCAGCTCCTCAATGGCAATGG
TCATCAGGGCACTGAGAACTTTGCCGACTTCGATCACGCTCCCATCTACA
ATGCAGTGGGTGCTCCCTTGCAGAACGGCCATACGACCAGTCCGCCCAAG
GGCGGAAATGCAGCGATGGCGCCCAGTGAGGATCGATATGCCGCTCTTAA
GGATCTCGACGAGCAGCTGCGAGAACTGAAGGCCAGCGAAAGCGCCACAG
AGACGCCCACGCCCACCAGTGGCAATGTTCAGGCCACAGATGCCTTTGGT
GGAGCCCTCAACAACAATCCAAATCCCTTCAAGGGCCAGCAACAGCAGCA
GCTCAGCAGCCATGTGGTGAATCCATTCCAGCAGCAGCAACAGCAGCAGC
ACCAGCAGAATCTCTATGGCCAGTTGACGCTCATACCAAATGCCTACGGC
AGCAGTTCCCAGCAGCAGATGGGGCACCATCTCCTCCAGCAGCAGCAGCA
GCAACAGCAGAGCTTCTTCAACTTCAACAACAACGGGTTCGCCATCTCGC
AGGGTCTGCCCAACGGCTGCGGCTTCGGCAGCATGCAACCCGCTCCTGTG
ATGGCCAACAATCCCTTTGCAGCCAGCGGCGCCATGAACACCAACAATCC
ATTCTTAGCAAGCTTTCTAGACCAT
BO07994.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:10:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| drongo-RH | 1554 | CG3365-PH | 211..1551 | 17..1357 | 6705 | 100 | Plus |
| drongo-RC | 1344 | CG3365-PC | 1..1341 | 17..1357 | 6705 | 100 | Plus |
| drongo-RI | 1545 | CG3365-PI | 211..1516 | 17..1322 | 6530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| drongo-RH | 3518 | CG3365-RH | 1214..2554 | 17..1357 | 6705 | 100 | Plus |
| drongo-RC | 2672 | CG3365-RC | 371..1711 | 17..1357 | 6705 | 100 | Plus |
| drongo-RI | 2625 | CG3365-RI | 1214..2519 | 17..1322 | 6530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 836544..837338 | 811..17 | 3975 | 100 | Minus |
| 2L | 23513712 | 2L | 834973..835292 | 1322..1003 | 1600 | 100 | Minus |
| 2L | 23513712 | 2L | 835353..835548 | 1004..809 | 980 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:10:28 has no hits.
BO07994.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:53 Download gff for
BO07994.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drongo-RC | 1..1344 | 17..1360 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:12 Download gff for
BO07994.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drongo-RC | 113..1459 | 7..1357 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:38 Download gff for
BO07994.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drongo-RC | 371..1711 | 17..1359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:53 Download gff for
BO07994.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drongo-RC | 113..1459 | 7..1357 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:04 Download gff for
BO07994.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drongo-RC | 371..1711 | 17..1359 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:04 Download gff for
BO07994.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 834545..834583 | 1322..1359 | 94 | <- | Minus |
| 2L | 834974..835290 | 1005..1321 | 100 | <- | Minus |
| 2L | 835353..835547 | 810..1004 | 100 | <- | Minus |
| 2L | 836546..837338 | 17..809 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:38 Download gff for
BO07994.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 834974..835290 | 1005..1321 | 100 | <- | Minus |
| arm_2L | 834545..834583 | 1322..1359 | 94 | <- | Minus |
| arm_2L | 835353..835547 | 810..1004 | 100 | <- | Minus |
| arm_2L | 836546..837338 | 17..809 | 100 | | Minus |
BO07994.pep Sequence
Translation from 16 to 1375
> BO07994.pep
MATFTQDEIDFLRSHGNELCAKTWLGLWDPKRAVHQQEQRELMMDKYERK
RYYLEPASPLKSLANAVNLKSSAPATNHTQNGHQNGYASIHLTPPAAQRT
SANGLQKVANSSSNSSGKTSSSISRPHYNHQNNSQNNNHDAFGLGGGLSS
LNSAGSTSTGALSDTSSCASNGFGADCDFVADFGSANIFDATSARSTGSP
AVSSVSSVGSSNGYAKVQPIRAAHLQQQQQLQQQLHQQQLLNGNGHQGTE
NFADFDHAPIYNAVGAPLQNGHTTSPPKGGNAAMAPSEDRYAALKDLDEQ
LRELKASESATETPTPTSGNVQATDAFGGALNNNPNPFKGQQQQQLSSHV
VNPFQQQQQQQHQQNLYGQLTLIPNAYGSSSQQQMGHHLLQQQQQQQQSF
FNFNNNGFAISQGLPNGCGFGSMQPAPVMANNPFAASGAMNTNNPFLASF
LDH
BO07994.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| drongo-PH | 517 | CG3365-PH | 71..517 | 1..447 | 2348 | 100 | Plus |
| drongo-PC | 447 | CG3365-PC | 1..447 | 1..447 | 2348 | 100 | Plus |
| drongo-PI | 514 | CG3365-PI | 71..507 | 1..437 | 2289 | 99.8 | Plus |
| drongo-PG | 603 | CG3365-PG | 1..409 | 1..366 | 1400 | 71.1 | Plus |
| drongo-PF | 673 | CG3365-PF | 71..479 | 1..366 | 1400 | 71.1 | Plus |
| drongo-PG | 603 | CG3365-PG | 398..603 | 229..447 | 971 | 86.3 | Plus |
