Clone Sequence Records
BO08004.3prime Sequence
956 bp (877 high quality bases) assembled on 2006-01-06
> BO08004.3prime
ATGGTCTAGAAAGCTTGCATCGTTGTTCCCTTCGATGCCCATGGCTTTGT
CGAAATCTTCCTCGCTAATCTTGTTCTTTTTCAGCCGCTTGAAGAGCCGA
ATATCGCTGGCCAGTTCATCGAGGTCCTCCTGGCTGAACTGCTGCCTCTT
TTTTCCCTTCCCGGACCTGCTCGCCTCCGCCTCTGCCGCTTTCTTTCGCT
GCTTCTTCGCCTTGCGCAGCTCCTTCTTAGACTTGGCATCCAGTTTTGCC
TTCTTTGTCTGATCCCAGGACTCAACACGCTTTTTGTGCTGCTTTTGGCC
CGGCCAGCTTCCCGTTTGCTCGTAAGTTTCCATTTTCTTTTGCCGGACTT
GTTCTTTCTGGGCGTTTTTGTAGGTAAGTTTGGATAAATCCACTTCAAAA
GCAGGCGCCACATAGCCGCCGCCCTGGTAGTTCTTTAGCTCCGGCATGCG
TGGCAGTTGCAGGAGACCGTAAGCAGTGGCCATCTTGCCCAGGTCCAGAT
CCTTTAGTCGCAGAATAGCGCTGCATTCGTGTTTGGTGTATGCTCTAACA
TGGGAAACAAAAGCGCGCATGCCTTTGTCATAGACGCCCTTGTCGGCCGC
CTGCAGCCGATGGAGTTGATCTAAGACGGCTGGTAGCTTCTTTTTTTCAC
GATCTGCATCCTCAGCCTCCTCGGTTAGCAGTTTAGTTAGCTCCACTTTC
TGGTTGATCTTCAGGAAGTGCACATAGGCATCCTCGCTGGGCAGGAGAAA
CACCAGAGCGTTGCCCTCGTTTCCCTGCCGAGCCGTGCGACCTACACGGT
GTACAAAGCTGGAGGCAGTTGATGGTGGATCCCACTGCACTACCCACTCG
ATCTCAGGTACATCCAAACCACGTGCGAGGACATCTGTGCAGAGGAGTAC
GGCCTGTGGAGTGTTCCGAAACTTCTCACCACATTGGCCCTCTTGTTTTT
CATCTT
BO08004.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9630-PA | 1842 | CG9630-RA | 931..1839 | 927..19 | 4545 | 100 | Minus |
| CG9630-PA | 1842 | CG9630-RA | 901..930 | 956..927 | 150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:08:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9630-RA | 1954 | CG9630-RA | 955..1893 | 956..19 | 4670 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:08:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8268004..8268942 | 19..956 | 4645 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:08:48 has no hits.
BO08004.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:34:55 Download gff for
BO08004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9630-PA | 901..1842 | 16..956 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:23:57 Download gff for
BO08004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9630-PA | 901..1842 | 16..956 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:47:03 Download gff for
BO08004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9630-RA | 955..1902 | 12..956 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:07:57 Download gff for
BO08004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9630-RA | 955..1902 | 12..956 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:07:57 Download gff for
BO08004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8267995..8268942 | 12..956 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:47:03 Download gff for
BO08004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4093717..4094664 | 12..956 | 99 | | Plus |
BO08004.5prime Sequence
813 bp (811 high quality bases) assembled on 2006-01-06
> BO08004.5prime
GAAGTTATCAGTCGACATGTCTCGAAAGAAGTGGTCTTCGTTGGACAAAC
CGCCCCTCTCAGATGCAGTGCTTCAAGTGGTGCAGAGCTTCGGCTTCCAG
CAGATGACGCCCGTCCAGACGGCGGCCATACCGCTACTTCTGGCCCGGAA
GGATGTCTCAGCGGAGGCTGTTACTGGTAGTGGTAAAACGCTAGCCTTCC
TTGTGCCCATGCTAGAAATCCTCCAGAGACGGCACAAGGAGACCCCGTGG
GGCCCCAAGGAAATAGGTGCCCTCGTCATCTCACCAACCCGGGAACTGGC
GCGCCAAATCTCCGAGGTCCTAGCCCAGTTTTTGGAACACGAAGACTTGG
AGCACCTGAATCAACAGTTGATTGTAGGCGGCAACAGCATTGAAGAGGAC
ATTGCCACGCTGCGTAGGGAAACGCCGTGTATACTGGTGTGCACTCCCGG
TCGGCTGGAGGATCTATTTCAGCGCAAAGGAGATGATCTTAATCTGGCGG
CTCAAGTGAAGAGTTTGGAGTTTCTCGTCTTAGACGAAGCTGACCGCCTG
TTGGACTTGGGCTTTAAAACAAGTGTAAATAACATACTGGGCTATCTGCC
CCGCCAACGTCGAACTGGGCTCTTTTCCGCCACACAGACTACCGAGGTTA
CGGACTTAATCCGTGCGGGGTTGAGAAATCCTGTTCTCGTATCAGTCAAA
GAGAAGGCATCCGTAAACACTCCAGCCCGCCTGCAGAACTTCTACAGGAT
TGTCGAGCCAGAACTAAAGTTTGTGGCCCTGCTGGAGTCCTCAGTTCACC
CGCCACCGTTATT
BO08004.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9630-PA | 1842 | CG9630-RA | 1..772 | 17..788 | 3860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:27:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9630-RA | 1954 | CG9630-RA | 55..852 | 17..813 | 3965 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:26:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8269045..8269842 | 813..17 | 3940 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-12 00:27:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 6720..6777 | 205..262 | 109 | 69.5 | Plus |
BO08004.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:34:56 Download gff for
BO08004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9630-PA | 1..798 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:23:58 Download gff for
BO08004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9630-PA | 1..798 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:49:49 Download gff for
BO08004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9630-RA | 49..852 | 9..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:09:39 Download gff for
BO08004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9630-RA | 49..852 | 9..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:09:39 Download gff for
BO08004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8269045..8269848 | 9..813 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:49:49 Download gff for
BO08004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4094767..4095570 | 9..813 | 99 | | Minus |
BO08004.complete Sequence
1873 bp (1873 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631011
> BO08004.complete
GAAGTTATCAGTCGACATGTCTCGAAAGAAGTGGTCTTCGTTGGACAAAC
CGCCCCTCTCAGATGCAGTGCTTCAAGTGGTGCAGAGCTTCGGCTTCCAG
CAGATGACGCCCGTCCAGACGGCGGCCATACCGCTACTTCTGGCCCGGAA
GGATGTCTCAGCGGAGGCTGTTACTGGTAGTGGTAAAACGCTAGCCTTCC
TTGTGCCCATGCTAGAAATCCTCCAGAGACGGCACAAGGAGACCCCGTGG
GGCCCCAAGGAAATAGGTGCCCTCGTCATCTCACCAACCCGGGAACTGGC
GCGCCAAATCTCCGAGGTCCTAGCCCAGTTTTTGGAACACGAAGACTTGG
AGCACCTGAATCAACAGTTGATTGTAGGCGGCAACAGCATTGAAGAGGAC
ATTGCCACGCTGCGTAGGGAAACGCCGTGTATACTGGTGTGCACTCCCGG
TCGGCTGGAGGATCTATTTCAGCGCAAAGGAGATGATCTTAATCTGGCGG
CTCAAGTGAAGAGTTTGGAGTTTCTCGTCTTAGACGAAGCTGACCGCCTG
TTGGACTTGGGCTTTAAAACAAGTGTAAATAACATACTGGGCTATCTGCC
CCGCCAACGTCGAACTGGGCTCTTTTCCGCCACACAGACTACCGAGGTTA
CGGACTTAATCCGTGCGGGGTTGAGAAATCCTGTTCTCGTATCAGTCAAA
GAGAAGGCATCCGTAAACACTCCAGCCCGCCTGCAGAACTTCTACAGGAT
TGTCGAGCCAGAACTAAAGTTTGTGGCCCTGCTGGAGTTCCTCAGTTCAC
CCGCCACCGTTATTGGAAAGGTAATGGTCTTTTTCCCCACCTGCGCCTGT
GTGGAGTATTGGGCTGAGGCCCTGCCGCCTCTTTTGCCCAAACGCACAGT
GCTAGGAATCCACGGAAAGATGAAAAACAAGAGGGCCAATGTGGTGGAGA
AGTTTCGGAACACTCCACAGGCCGTACTCCTCTGCACAGATGTCCTCGCA
CGTGGTTTGGATGTACCTGAGATCGAGTGGGTAGTGCAGTGGGATCCACC
ATCAACTGCCTCCAGCTTTGTACACCGTGTAGGTCGCACGGCTCGGCAGG
GAAACGAGGGCAACGCTCTGGTGTTTCTCCTGCCCAGCGAGGATGCCTAT
GTGCACTTCCTGAAGATCAACCAGAAAGTGGAGCTAACTAAACTGCTAAC
CGAGGAGGCTGAGGATGCAGATCGTGAAAAAAAGAAGCTACCAGCCGTCT
TAGATCAACTCCATCGGCTGCAGGCGGCCGACAAGGGCGTCTATGACAAA
GGCATGCGCGCTTTTGTTTCCCATGTTAGAGCATACACCAAACACGAATG
CAGCGCTATTCTGCGACTAAAGGATCTGGACCTGGGCAAGATGGCCACTG
CTTACGGTCTCCTGCAACTGCCACGCATGCCGGAGCTAAAGAACTACCAG
GGCGGCGGCTATGTGGCGCCTGCTTTTGAAGTGGATTTATCCAAACTTAC
CTACAAAAACGCCCAGAAAGAACAAGTCCGGCAAAAGAAAATGGAAACTT
ACGAGCAAACGGGAAGCTGGCCGGGCCAAAAGCAGCACAAAAAGCGTGTT
GAGTCCTGGGATCAGACAAAGAAGGCAAAACTGGATGCCAAGTCTAAGAA
GGAGCTGCGCAAGGCGAAGAAGCAGCGAAAGAAAGCGGCAGAGGCGGAGG
CGAGCAGGTCCGGGAAGGGAAAAAAGAGGCAGCAGTTCAGCCAGGAGGAC
CTCGATGAACTGGCCAGCGATATTCGGCTCTTCAAGCGGCTGAAAAAGAA
CAAGATTAGCGAGGAAGATTTCGACAAAGCCATGGGCATCGAAGGGAACA
ACGATGCAAGCTTTCTAGACCAT
BO08004.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:17:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9630-RA | 1842 | CG9630-PA | 1..1839 | 17..1855 | 9195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9630-RA | 1954 | CG9630-RA | 55..1893 | 17..1855 | 9195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8268004..8269842 | 1855..17 | 9195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:17:32 has no hits.
BO08004.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:40 Download gff for
BO08004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9630-RA | 1..1842 | 17..1858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:19 Download gff for
BO08004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9630-RA | 35..1888 | 9..1862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:15 Download gff for
BO08004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9630-RA | 55..1893 | 17..1857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:40 Download gff for
BO08004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9630-RA | 35..1888 | 9..1862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:03 Download gff for
BO08004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9630-RA | 55..1893 | 17..1857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:03 Download gff for
BO08004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8268000..8269842 | 17..1857 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:15 Download gff for
BO08004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4093722..4095564 | 17..1857 | 99 | | Minus |
BO08004.pep Sequence
Translation from 16 to 1873
> BO08004.pep
MSRKKWSSLDKPPLSDAVLQVVQSFGFQQMTPVQTAAIPLLLARKDVSAE
AVTGSGKTLAFLVPMLEILQRRHKETPWGPKEIGALVISPTRELARQISE
VLAQFLEHEDLEHLNQQLIVGGNSIEEDIATLRRETPCILVCTPGRLEDL
FQRKGDDLNLAAQVKSLEFLVLDEADRLLDLGFKTSVNNILGYLPRQRRT
GLFSATQTTEVTDLIRAGLRNPVLVSVKEKASVNTPARLQNFYRIVEPEL
KFVALLEFLSSPATVIGKVMVFFPTCACVEYWAEALPPLLPKRTVLGIHG
KMKNKRANVVEKFRNTPQAVLLCTDVLARGLDVPEIEWVVQWDPPSTASS
FVHRVGRTARQGNEGNALVFLLPSEDAYVHFLKINQKVELTKLLTEEAED
ADREKKKLPAVLDQLHRLQAADKGVYDKGMRAFVSHVRAYTKHECSAILR
LKDLDLGKMATAYGLLQLPRMPELKNYQGGGYVAPAFEVDLSKLTYKNAQ
KEQVRQKKMETYEQTGSWPGQKQHKKRVESWDQTKKAKLDAKSKKELRKA
KKQRKKAAEAEASRSGKGKKRQQFSQEDLDELASDIRLFKRLKKNKISEE
DFDKAMGIEGNNDASFLDH
BO08004.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:37:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9630-PA | 613 | CG9630-PA | 1..613 | 1..613 | 3122 | 100 | Plus |
| pit-PC | 680 | CG6375-PC | 191..632 | 11..475 | 671 | 36.5 | Plus |
| pit-PA | 680 | CG6375-PA | 191..632 | 11..475 | 671 | 36.5 | Plus |
| pit-PB | 680 | CG6375-PB | 191..632 | 11..475 | 671 | 36.5 | Plus |
| CG5800-PA | 826 | CG5800-PA | 78..537 | 13..477 | 597 | 34.8 | Plus |
