Clone Sequence Records
BO08005.3prime Sequence
755 bp (754 high quality bases) assembled on 2006-01-06
> BO08005.3prime
ATGGTCTAGAAAGCTTGCCGTCTTTAGTTTCGATTTGTCTACGAAAGAAA
GGGGTGTTTGAGCCATGAAAATATCGCCATAGGGATTGGTGGGTTTTTGG
CTTTCGCGGTCGAATTCGGAGCCAATGGCCCACAGCGACTCCAGATCGTA
TTCCTCGCGAGCACTCGGTGAAAATATGTGCAGGGCAATGTTGCCCAAGT
CCATGGCCATCCAATCCCGGCTCTTATCGCCCTCGATGCGCGGCAATATG
TCACCCTTGCCCCGCTTGATCTTGAACATTCGGCGCACGAACTCCGCGGT
GGACAGCATGTGTCGGTAACTGCGACCACTGCAAACCACCAGGTGGTCAA
CGTACTTCAGGTTCTCCGGCACGTAGCAGACGAATATGTCGTCCACATTC
TCCTTGCGGAGCAGCTCCACCAAGTCCTCAACGTCGAACACTCCGCGAAC
ACCTCGCTTTAAATTGAGGCCGTAATAGTGATCCAGCTCCAGGTCCGGCT
CTGGAAGTTGCTGCTCCTGGTGGCGTGCCTCTTCCACATCAAAAATCTCC
GTGGCTTCCTCATCGCGGAATATTTTGTACTTGTCTTGCACGCCGGCAAC
CAAAGTCTTTTCGGGATTGCCTTCGATTTCCTGGCCCTTCGCTGCCTGTT
GTGGCGGCTTGGAGAACTCGTGGTGGAAGCAACGCAGGACAGGCACACTC
AGGCGCCTGTCGTGCACTAGGCGGAACACGCGGGTCAGCATGTCGACTGA
TAACT
BO08005.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9166-PA | 726 | 312-RA | 1..723 | 741..19 | 3615 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:38:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
312-RB | 873 | CG9166-RB | 71..793 | 741..19 | 3615 | 100 | Minus |
312-RA | 1618 | CG9166-RA | 71..793 | 741..19 | 3615 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:38:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1351186..1351472 | 741..455 | 1435 | 100 | Minus |
3L | 28110227 | 3L | 1351529..1351790 | 455..194 | 1310 | 100 | Minus |
3L | 28110227 | 3L | 1351852..1352028 | 195..19 | 885 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:38:49 has no hits.
BO08005.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 03:34:57 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:23:59 Download gff for
BO08005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9166-PA | 1..726 | 15..741 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:05:49 Download gff for
BO08005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
312-RA | 65..796 | 15..748 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:54:33 Download gff for
BO08005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
312-RA | 65..796 | 15..748 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:54:33 Download gff for
BO08005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1351180..1351471 | 456..748 | 98 | -> | Minus |
3L | 1351529..1351789 | 195..455 | 100 | -> | Minus |
3L | 1351853..1352031 | 15..194 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:05:49 Download gff for
BO08005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1351853..1352031 | 15..194 | 98 | | Minus |
arm_3L | 1351180..1351471 | 456..748 | 98 | -> | Minus |
arm_3L | 1351529..1351789 | 195..455 | 100 | -> | Minus |
BO08005.5prime Sequence
755 bp (754 high quality bases) assembled on 2006-01-06
> BO08005.5prime
GAAGTTATCAGTCGACATGCTGACCCGCGTGTTCCGCCTAGTGCACGACA
GGCGCCTGAGTGTGCCTGTCCTGCGTTGCTTCCACCACGAGTTCTCCAAG
CCGCCACAACAGGCAGCGAAGGGCCAGGAAATCGAAGGCAATCCCGAAAA
GACTTTGGTTGCCGGCGTGCAAGACAAGTACAAAATATTCCGCGATGAGG
AAGCCACGGAGATTTTTGATGTGGAAGAGGCACGCCACCAGGAGCAGCAA
CTTCCAGAGCCGGACCTGGAGCTGGATCACTATTACGGCCTCAATTTAAA
GCGAGGTGTTCGCGGAGTGTTCGACGTTGAGGACTTGGTGGAGCTGCTCC
GCAAGGAGAATGTGGACGACATATTCGTCTGCTACGTGCCGGAGAACCTG
AAGTACGTTGACCACCTGGTGGTTTGCAGTGGTCGCAGTTACCGACACAT
GCTGTCCACCGCGGAGTTCGTGCGCCGAATGTTCAAGATCAAGCGGGGCA
AGGGTGACATATTGCCGCGCATCGAGGGCGATAAGAGCCGGGATTGGATG
GCCATGGACTTGGGCAACATTGCCCTGCACATATTTTCACCGAGTGCTCG
CGAGGAATACGATCTGGAGTCGCTGTGGGCCATTGGCTCCGAATTCGACC
GCGAAAGCCAAAAACCCACCAATCCCTATGGCGATATTTTCATGGCTCAN
ACACCCCTTTCTTTCGTAGACAAATCGAAACTAAAGACGGCAAGCTTTCT
AGACC
BO08005.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9166-PA | 726 | 312-RA | 1..723 | 17..739 | 3596 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:27:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
312-RB | 873 | CG9166-RB | 71..793 | 17..739 | 3604 | 99.9 | Plus |
312-RA | 1618 | CG9166-RA | 71..793 | 17..739 | 3604 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:27:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1351186..1351472 | 17..303 | 1435 | 100 | Plus |
3L | 28110227 | 3L | 1351529..1351790 | 303..564 | 1310 | 100 | Plus |
3L | 28110227 | 3L | 1351852..1352028 | 563..739 | 874 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:27:35 has no hits.
BO08005.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 03:34:58 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:24:01 Download gff for
BO08005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9166-PA | 1..726 | 17..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:49:51 Download gff for
BO08005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
312-RA | 65..796 | 10..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:11:28 Download gff for
BO08005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
312-RA | 65..796 | 10..743 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:11:28 Download gff for
BO08005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1351180..1351471 | 10..302 | 98 | -> | Plus |
3L | 1351853..1352031 | 564..743 | 98 | | Plus |
3L | 1351529..1351789 | 303..563 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:49:51 Download gff for
BO08005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1351180..1351471 | 10..302 | 98 | -> | Plus |
arm_3L | 1351529..1351789 | 303..563 | 100 | -> | Plus |
arm_3L | 1351853..1352031 | 564..743 | 98 | | Plus |
BO08005.complete Sequence
757 bp (757 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631012
> BO08005.complete
GAAGTTATCAGTCGACATGCTGACCCGCGTGTTCCGCCTAGTGCACGACA
GGCGCCTGAGTGTGCCTGTCCTGCGTTGCTTCCACCACGAGTTCTCCAAG
CCGCCACAACAGGCAGCGAAGGGCCAGGAAATCGAAGGCAATCCCGAAAA
GACTTTGGTTGCCGGCGTGCAAGACAAGTACAAAATATTCCGCGATGAGG
AAGCCACGGAGATTTTTGATGTGGAAGAGGCACGCCACCAGGAGCAGCAA
CTTCCAGAGCCGGACCTGGAGCTGGATCACTATTACGGCCTCAATTTAAA
GCGAGGTGTTCGCGGAGTGTTCGACGTTGAGGACTTGGTGGAGCTGCTCC
GCAAGGAGAATGTGGACGACATATTCGTCTGCTACGTGCCGGAGAACCTG
AAGTACGTTGACCACCTGGTGGTTTGCAGTGGTCGCAGTTACCGACACAT
GCTGTCCACCGCGGAGTTCGTGCGCCGAATGTTCAAGATCAAGCGGGGCA
AGGGTGACATATTGCCGCGCATCGAGGGCGATAAGAGCCGGGATTGGATG
GCCATGGACTTGGGCAACATTGCCCTGCACATATTTTCACCGAGTGCTCG
CGAGGAATACGATCTGGAGTCGCTGTGGGCCATTGGCTCCGAATTCGACC
GCGAAAGCCAAAAACCCACCAATCCCTATGGCGATATTTTCATGGCTCAA
ACACCCCTTTCTTTCGTAGACAAATCGAAACTAAAGACGGCAAGCTTTCT
AGACCAT
BO08005.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:03:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
312-RB | 726 | CG9166-PB | 1..723 | 17..739 | 3615 | 100 | Plus |
312-RA | 726 | CG9166-PA | 1..723 | 17..739 | 3615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:03:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
312-RB | 873 | CG9166-RB | 71..793 | 17..739 | 3615 | 100 | Plus |
312-RA | 1618 | CG9166-RA | 71..793 | 17..739 | 3615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:03:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1351186..1351472 | 17..303 | 1435 | 100 | Plus |
3L | 28110227 | 3L | 1351529..1351790 | 303..564 | 1310 | 100 | Plus |
3L | 28110227 | 3L | 1351852..1352028 | 563..739 | 885 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:03:26 has no hits.
BO08005.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:42 Download gff for
BO08005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
312-RA | 1..726 | 17..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:50 Download gff for
BO08005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
312-RA | 42..773 | 10..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:28 Download gff for
BO08005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
312-RA | 71..793 | 17..741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:42 Download gff for
BO08005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
312-RA | 42..773 | 10..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:49 Download gff for
BO08005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
312-RA | 71..793 | 17..741 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:49 Download gff for
BO08005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1351853..1352028 | 564..741 | 98 | | Plus |
3L | 1351186..1351471 | 17..302 | 100 | -> | Plus |
3L | 1351529..1351789 | 303..563 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:28 Download gff for
BO08005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1351186..1351471 | 17..302 | 100 | -> | Plus |
arm_3L | 1351529..1351789 | 303..563 | 100 | -> | Plus |
arm_3L | 1351853..1352028 | 564..741 | 98 | | Plus |
BO08005.pep Sequence
Translation from 16 to 757
> BO08005.pep
MLTRVFRLVHDRRLSVPVLRCFHHEFSKPPQQAAKGQEIEGNPEKTLVAG
VQDKYKIFRDEEATEIFDVEEARHQEQQLPEPDLELDHYYGLNLKRGVRG
VFDVEDLVELLRKENVDDIFVCYVPENLKYVDHLVVCSGRSYRHMLSTAE
FVRRMFKIKRGKGDILPRIEGDKSRDWMAMDLGNIALHIFSPSAREEYDL
ESLWAIGSEFDRESQKPTNPYGDIFMAQTPLSFVDKSKLKTASFLDH
BO08005.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
312-PB | 241 | CG9166-PB | 1..241 | 1..241 | 1267 | 100 | Plus |
312-PA | 241 | CG9166-PA | 1..241 | 1..241 | 1267 | 100 | Plus |