Clone BO08005 Report

Search the DGRC for BO08005

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:80
Well:5
Vector:pDNR-Dual
Associated Gene/Transcript312-RA
Protein status:BO08005.pep: validated full length
Sequenced Size:757

Clone Sequence Records

BO08005.3prime Sequence

755 bp (754 high quality bases) assembled on 2006-01-06

> BO08005.3prime
ATGGTCTAGAAAGCTTGCCGTCTTTAGTTTCGATTTGTCTACGAAAGAAA
GGGGTGTTTGAGCCATGAAAATATCGCCATAGGGATTGGTGGGTTTTTGG
CTTTCGCGGTCGAATTCGGAGCCAATGGCCCACAGCGACTCCAGATCGTA
TTCCTCGCGAGCACTCGGTGAAAATATGTGCAGGGCAATGTTGCCCAAGT
CCATGGCCATCCAATCCCGGCTCTTATCGCCCTCGATGCGCGGCAATATG
TCACCCTTGCCCCGCTTGATCTTGAACATTCGGCGCACGAACTCCGCGGT
GGACAGCATGTGTCGGTAACTGCGACCACTGCAAACCACCAGGTGGTCAA
CGTACTTCAGGTTCTCCGGCACGTAGCAGACGAATATGTCGTCCACATTC
TCCTTGCGGAGCAGCTCCACCAAGTCCTCAACGTCGAACACTCCGCGAAC
ACCTCGCTTTAAATTGAGGCCGTAATAGTGATCCAGCTCCAGGTCCGGCT
CTGGAAGTTGCTGCTCCTGGTGGCGTGCCTCTTCCACATCAAAAATCTCC
GTGGCTTCCTCATCGCGGAATATTTTGTACTTGTCTTGCACGCCGGCAAC
CAAAGTCTTTTCGGGATTGCCTTCGATTTCCTGGCCCTTCGCTGCCTGTT
GTGGCGGCTTGGAGAACTCGTGGTGGAAGCAACGCAGGACAGGCACACTC
AGGCGCCTGTCGTGCACTAGGCGGAACACGCGGGTCAGCATGTCGACTGA
TAACT

BO08005.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG9166-PA 726 312-RA 1..723 741..19 3615 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
312-RB 873 CG9166-RB 71..793 741..19 3615 100 Minus
312-RA 1618 CG9166-RA 71..793 741..19 3615 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1351186..1351472 741..455 1435 100 Minus
3L 28110227 3L 1351529..1351790 455..194 1310 100 Minus
3L 28110227 3L 1351852..1352028 195..19 885 100 Minus
Blast to na_te.dros performed on 2015-02-13 05:38:49 has no hits.

BO08005.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 03:34:57 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:23:59 Download gff for BO08005.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9166-PA 1..726 15..741 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:05:49 Download gff for BO08005.3prime
Subject Subject Range Query Range Percent Splice Strand
312-RA 65..796 15..748 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:54:33 Download gff for BO08005.3prime
Subject Subject Range Query Range Percent Splice Strand
312-RA 65..796 15..748 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:54:33 Download gff for BO08005.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1351180..1351471 456..748 98 -> Minus
3L 1351529..1351789 195..455 100 -> Minus
3L 1351853..1352031 15..194 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:05:49 Download gff for BO08005.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1351853..1352031 15..194 98   Minus
arm_3L 1351180..1351471 456..748 98 -> Minus
arm_3L 1351529..1351789 195..455 100 -> Minus

BO08005.5prime Sequence

755 bp (754 high quality bases) assembled on 2006-01-06

> BO08005.5prime
GAAGTTATCAGTCGACATGCTGACCCGCGTGTTCCGCCTAGTGCACGACA
GGCGCCTGAGTGTGCCTGTCCTGCGTTGCTTCCACCACGAGTTCTCCAAG
CCGCCACAACAGGCAGCGAAGGGCCAGGAAATCGAAGGCAATCCCGAAAA
GACTTTGGTTGCCGGCGTGCAAGACAAGTACAAAATATTCCGCGATGAGG
AAGCCACGGAGATTTTTGATGTGGAAGAGGCACGCCACCAGGAGCAGCAA
CTTCCAGAGCCGGACCTGGAGCTGGATCACTATTACGGCCTCAATTTAAA
GCGAGGTGTTCGCGGAGTGTTCGACGTTGAGGACTTGGTGGAGCTGCTCC
GCAAGGAGAATGTGGACGACATATTCGTCTGCTACGTGCCGGAGAACCTG
AAGTACGTTGACCACCTGGTGGTTTGCAGTGGTCGCAGTTACCGACACAT
GCTGTCCACCGCGGAGTTCGTGCGCCGAATGTTCAAGATCAAGCGGGGCA
AGGGTGACATATTGCCGCGCATCGAGGGCGATAAGAGCCGGGATTGGATG
GCCATGGACTTGGGCAACATTGCCCTGCACATATTTTCACCGAGTGCTCG
CGAGGAATACGATCTGGAGTCGCTGTGGGCCATTGGCTCCGAATTCGACC
GCGAAAGCCAAAAACCCACCAATCCCTATGGCGATATTTTCATGGCTCAN
ACACCCCTTTCTTTCGTAGACAAATCGAAACTAAAGACGGCAAGCTTTCT
AGACC

BO08005.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG9166-PA 726 312-RA 1..723 17..739 3596 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:27:39
Subject Length Description Subject Range Query Range Score Percent Strand
312-RB 873 CG9166-RB 71..793 17..739 3604 99.9 Plus
312-RA 1618 CG9166-RA 71..793 17..739 3604 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:27:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1351186..1351472 17..303 1435 100 Plus
3L 28110227 3L 1351529..1351790 303..564 1310 100 Plus
3L 28110227 3L 1351852..1352028 563..739 874 99.4 Plus
Blast to na_te.dros performed on 2015-02-12 00:27:35 has no hits.

BO08005.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 03:34:58 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:24:01 Download gff for BO08005.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9166-PA 1..726 17..743 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:49:51 Download gff for BO08005.5prime
Subject Subject Range Query Range Percent Splice Strand
312-RA 65..796 10..743 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:11:28 Download gff for BO08005.5prime
Subject Subject Range Query Range Percent Splice Strand
312-RA 65..796 10..743 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:11:28 Download gff for BO08005.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1351180..1351471 10..302 98 -> Plus
3L 1351853..1352031 564..743 98   Plus
3L 1351529..1351789 303..563 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:49:51 Download gff for BO08005.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1351180..1351471 10..302 98 -> Plus
arm_3L 1351529..1351789 303..563 100 -> Plus
arm_3L 1351853..1352031 564..743 98   Plus

BO08005.complete Sequence

757 bp (757 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631012

> BO08005.complete
GAAGTTATCAGTCGACATGCTGACCCGCGTGTTCCGCCTAGTGCACGACA
GGCGCCTGAGTGTGCCTGTCCTGCGTTGCTTCCACCACGAGTTCTCCAAG
CCGCCACAACAGGCAGCGAAGGGCCAGGAAATCGAAGGCAATCCCGAAAA
GACTTTGGTTGCCGGCGTGCAAGACAAGTACAAAATATTCCGCGATGAGG
AAGCCACGGAGATTTTTGATGTGGAAGAGGCACGCCACCAGGAGCAGCAA
CTTCCAGAGCCGGACCTGGAGCTGGATCACTATTACGGCCTCAATTTAAA
GCGAGGTGTTCGCGGAGTGTTCGACGTTGAGGACTTGGTGGAGCTGCTCC
GCAAGGAGAATGTGGACGACATATTCGTCTGCTACGTGCCGGAGAACCTG
AAGTACGTTGACCACCTGGTGGTTTGCAGTGGTCGCAGTTACCGACACAT
GCTGTCCACCGCGGAGTTCGTGCGCCGAATGTTCAAGATCAAGCGGGGCA
AGGGTGACATATTGCCGCGCATCGAGGGCGATAAGAGCCGGGATTGGATG
GCCATGGACTTGGGCAACATTGCCCTGCACATATTTTCACCGAGTGCTCG
CGAGGAATACGATCTGGAGTCGCTGTGGGCCATTGGCTCCGAATTCGACC
GCGAAAGCCAAAAACCCACCAATCCCTATGGCGATATTTTCATGGCTCAA
ACACCCCTTTCTTTCGTAGACAAATCGAAACTAAAGACGGCAAGCTTTCT
AGACCAT

BO08005.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:03:27
Subject Length Description Subject Range Query Range Score Percent Strand
312-RB 726 CG9166-PB 1..723 17..739 3615 100 Plus
312-RA 726 CG9166-PA 1..723 17..739 3615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:03:28
Subject Length Description Subject Range Query Range Score Percent Strand
312-RB 873 CG9166-RB 71..793 17..739 3615 100 Plus
312-RA 1618 CG9166-RA 71..793 17..739 3615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:03:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1351186..1351472 17..303 1435 100 Plus
3L 28110227 3L 1351529..1351790 303..564 1310 100 Plus
3L 28110227 3L 1351852..1352028 563..739 885 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:03:26 has no hits.

BO08005.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:42 Download gff for BO08005.complete
Subject Subject Range Query Range Percent Splice Strand
312-RA 1..726 17..743 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:50 Download gff for BO08005.complete
Subject Subject Range Query Range Percent Splice Strand
312-RA 42..773 10..743 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:28 Download gff for BO08005.complete
Subject Subject Range Query Range Percent Splice Strand
312-RA 71..793 17..741 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:42 Download gff for BO08005.complete
Subject Subject Range Query Range Percent Splice Strand
312-RA 42..773 10..743 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:49 Download gff for BO08005.complete
Subject Subject Range Query Range Percent Splice Strand
312-RA 71..793 17..741 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:49 Download gff for BO08005.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1351853..1352028 564..741 98   Plus
3L 1351186..1351471 17..302 100 -> Plus
3L 1351529..1351789 303..563 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:28 Download gff for BO08005.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1351186..1351471 17..302 100 -> Plus
arm_3L 1351529..1351789 303..563 100 -> Plus
arm_3L 1351853..1352028 564..741 98   Plus

BO08005.pep Sequence

Translation from 16 to 757

> BO08005.pep
MLTRVFRLVHDRRLSVPVLRCFHHEFSKPPQQAAKGQEIEGNPEKTLVAG
VQDKYKIFRDEEATEIFDVEEARHQEQQLPEPDLELDHYYGLNLKRGVRG
VFDVEDLVELLRKENVDDIFVCYVPENLKYVDHLVVCSGRSYRHMLSTAE
FVRRMFKIKRGKGDILPRIEGDKSRDWMAMDLGNIALHIFSPSAREEYDL
ESLWAIGSEFDRESQKPTNPYGDIFMAQTPLSFVDKSKLKTASFLDH

BO08005.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
312-PB 241 CG9166-PB 1..241 1..241 1267 100 Plus
312-PA 241 CG9166-PA 1..241 1..241 1267 100 Plus