Clone Sequence Records
BO08007.3prime Sequence
933 bp (808 high quality bases) assembled on 2006-01-06
> BO08007.3prime
ATGGTCTAGAAAGCTTGCGAGCAGGCCACACCGCGTGACAATCACGGTTT
TCTTGGTCTTGCCATTTTTGGTGCCGAATTCGTGGCAATTTTGGAGCACC
CTTAGGCCGCCGCAAACTCGTCCAAAGATGACCCGCTGCCACGGAATCAC
CGATTGCTTAAAGCTGATGGTATAGCTGAGAAGTCCTTGGGGAAAGTGAC
GGCGATAGTCCCATGGGTATGATAATACGCCGGTTATCTTGCTGGGATCC
AAAAAGGAGTACTTGACGCTGTGGTGATTGTGCAGGGAATCATGAACAGC
CGGTACAAGTTCAGCCTCCATCCAGAGATTGGAGAATATTCGCACAAACC
GATGGCATCCTACATCGTTGTGGGTGGCCATACGCACAAACTCCAGCACC
ACTTCCGGACTCAGTTCCGTGTAGAGTTGTAGGAGTAATCTGCCCATGAA
CTGGTTATTCTCTCGCACCGCCATATCGAAATATATGATGGGTCGCAGCA
GGATTTGGGCACTACGTTTGCCCAAGCGAGGCGATGGCATATATGGCAAG
AAAGTACTGACCGTCTCATCGGAGGCCTTTTGTTCGAGTGGCTTGACGGG
TGGCACCCAAGGATTGTGTGAATCCACTTTGGATTTCACTTGCGATAGGC
GACAACCGAGCTGCCTGTTCTCCTGGCTCAAGCGATCTGCCAGCTCACGG
ATTTTATTCCGATTCGACTGAAGGGCGGGAAAATGGCGATTGAAGCTATC
CACACCCCCCTTTAGTCGATTGGTCTTGTTAATCCGTCCAAGGAGTTCCA
TATTTTTTCGGAAAATCTCCTGCTTTTGGTTAAATTCGCCGGCTAACTGG
CTGCGATTGAGAAGGCGAGCATGAAATCCAAGCGAATCCCCAGCAGATTT
AATACTCTTGAGACGTCTGTGATCGATCTGCGA
BO08007.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32236-PA | 1158 | CG32236-RA | 241..1155 | 933..19 | 4575 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:30:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32236-RA | 1463 | CG32236-RA | 390..1304 | 933..19 | 4575 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:30:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4666086..4667000 | 19..933 | 4575 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 13:30:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rooA | 7621 | rooA ROOA_LTR 7621bp | 3293..3329 | 701..665 | 113 | 78.4 | Minus |
BO08007.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:35:01 Download gff for
BO08007.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32236-PA | 242..1158 | 15..932 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:24:05 Download gff for
BO08007.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32236-PA | 242..1158 | 15..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:09:46 Download gff for
BO08007.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32236-RA | 391..1307 | 15..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:44:01 Download gff for
BO08007.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32236-RA | 391..1307 | 15..932 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:44:01 Download gff for
BO08007.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4666083..4666999 | 15..932 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:09:46 Download gff for
BO08007.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4666083..4666999 | 15..932 | 99 | | Plus |
BO08007.5prime Sequence
901 bp (847 high quality bases) assembled on 2006-01-06
> BO08007.5prime
GAAGTTATCAGTCGACATGAATAACCGTGGAGTTGGATTCTCGGAGTTTT
TCGTAAAAACCCCAACCAGTCGGTCCATTCAATTGCGTGCCAAAAAAGTG
GCAAAGGAACTGGTGATGCAAAATAAGGATGTGCGGGACAAGATATTGAA
AAACAAAGTGCTTACCTATGCACAATTCCGAAAGATAATGAAATCAGCTG
GCAATGTGACGGATCTGAATCCGATCACCTATAAAAGTATGATTGAAATA
CGACAATCGCAGATCGATCACAGACGTCTCAAGAGTATTAAATCTGCTGG
GGATTCGCTTGGATTTCATGCTCGCCTTCTCAATCGCAGCCAGTTAGCCG
GCGAATTTAACCAAAAGCAGGAGATTTTCCGAAAAAATATGGAACTCCTT
GGACGGATTAACAAGACCAATCGACTAAAGGGGGGTGTGGATAGCTTCAA
TCGCCATTTTCCCGCCCTTCAGTCGAATCGGAATAAAATCCGTGAGCTGG
CAGATCGCTTGAGCCAGGAGAACAGGCAGCTCGGTTGTCGCCTATCGCAA
GTGAAATCCAAAGTGGATTCACACAATCCTTGGGTGCCACCCGTCAAGCC
ACTCGAACAAAAGGCCTCCGATGAGACGGTCAGTACTTTCTTGCCATATA
TGCCATCGCCTCGCTTGGGCAAACGTAGTGCCCAAATCCTGCTGCGACCC
ATCATATATTTCGATATGGCGGTGCGAGAGAATAACCAGTTCATGGGCAG
ATTACTCCTACAACTCTACACGGAACTGAGTCCGGAAGTGGTGCTGGAGT
TTGTGCGTATGGCCACCCACAACGATGTAGGATGCCATCGGTTTGTGCGA
ATATTCTCCAATCTCTGGATGGAGGCTGAACTTGTACCGGCTGTTCATGA
T
BO08007.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32236-PA | 1158 | CG32236-RA | 1..885 | 17..901 | 4425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:51:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32236-RA | 1463 | CG32236-RA | 150..1034 | 17..901 | 4425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:50:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4666356..4667240 | 901..17 | 4425 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 15:50:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rooA | 7621 | rooA ROOA_LTR 7621bp | 3293..3329 | 489..525 | 113 | 78.4 | Plus |
BO08007.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:35:02 Download gff for
BO08007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32236-PA | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:24:06 Download gff for
BO08007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32236-PA | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:10:17 Download gff for
BO08007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32236-RA | 146..1034 | 9..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:13:15 Download gff for
BO08007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32236-RA | 146..1034 | 9..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:13:15 Download gff for
BO08007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4666356..4667244 | 9..901 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:10:17 Download gff for
BO08007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4666356..4667244 | 9..901 | 99 | | Minus |
BO08007.complete Sequence
1189 bp (1189 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631013
> BO08007.complete
GAAGTTATCAGTCGACATGAATAACCGTGGAGTTGGATTCTCGGAGTTTT
TCGTAAAAACCCCAACCAGTCGGTCCATTCAATTGCGTGCCAAAAAAGTG
GCAAAGGAACTGGTGATGCAAAATAAGGATGTGCGGGACAAGATATTGAA
AAACAAAGTGCTTACCTATGCACAATTCCGAAAGATAATGAAATCAGCTG
GCAATGTGACGGATCTGAATCCGATCACCTATAAAAGTATGATTGAAATA
CGACAATCGCAGATCGATCACAGACGTCTCAAGAGTATTAAATCTGCTGG
GGATTCGCTTGGATTTCATGCTCGCCTTCTCAATCGCAGCCAGTTAGCCG
GCGAATTTAACCAAAAGCAGGAGATTTTCCGAAAAAATATGGAACTCCTT
GGACGGATTAACAAGACCAATCGACTAAAGGGGGGTGTGGATAGCTTCAA
TCGCCATTTTCCCGCCCTTCAGTCGAATCGGAATAAAATCCGTGAGCTGG
CAGATCGCTTGAGCCAGGAGAACAGGCAGCTCGGTTGTCGCCTATCGCAA
GTGAAATCCAAAGTGGATTCACACAATCCTTGGGTGCCACCCGTCAAGCC
ACTCGAACAAAAGGCCTCCGATGAGACGGTCAGTACTTTCTTGCCATATA
TGCCATCGCCTCGCTTGGGCAAACGTAGTGCCCAAATCCTGCTGCGACCC
ATCATATATTTCGATATGGCGGTGCGAGAGAATAACCAGTTCATGGGCAG
ATTACTCCTACAACTCTACACGGAACTGAGTCCGGAAGTGGTGCTGGAGT
TTGTGCGTATGGCCACCCACAACGATGTAGGATGCCATCGGTTTGTGCGA
ATATTCTCCAATCTCTGGATGGAGGCTGAACTTGTACCGGCTGTTCATGA
TTCCCTGCACAATCACCACAGCGTCAAGTACTCCTTTTTGGATCCCAGCA
AGATAACCGGCGTATTATCATACCCATGGGACTATCGCCGTCACTTTCCC
CAAGGACTTCTCAGCTATACCATCAGCTTTAAGCAATCGGTGATTCCGTG
GCAGCGGGTCATCTTTGGACGAGTTTGCGGCGGCCTAAGGGTGCTCCAAA
ATTGCCACGAATTCGGCACCAAAAATGGCAAGACCAAGAAAACCGTGATT
GTCACGCGGTGTGGCCTGCTCGCAAGCTTTCTAGACCAT
BO08007.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:53:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32236-RA | 1158 | CG32236-PA | 1..1155 | 17..1171 | 5775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32236-RA | 1463 | CG32236-RA | 150..1304 | 17..1171 | 5775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4666086..4667240 | 1171..17 | 5775 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:53:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rooA | 7621 | rooA ROOA_LTR 7621bp | 3293..3329 | 489..525 | 113 | 78.4 | Plus |
BO08007.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:40 Download gff for
BO08007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32236-RA | 1..1158 | 17..1175 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:56 Download gff for
BO08007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32236-RA | 146..1307 | 9..1175 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:37:18 Download gff for
BO08007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32236-RA | 150..1304 | 17..1173 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:40 Download gff for
BO08007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32236-RA | 146..1307 | 9..1175 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:12:23 Download gff for
BO08007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32236-RA | 150..1304 | 17..1173 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:12:23 Download gff for
BO08007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4666084..4667240 | 17..1173 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:37:18 Download gff for
BO08007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4666084..4667240 | 17..1173 | 99 | | Minus |
BO08007.pep Sequence
Translation from 16 to 1189
> BO08007.pep
MNNRGVGFSEFFVKTPTSRSIQLRAKKVAKELVMQNKDVRDKILKNKVLT
YAQFRKIMKSAGNVTDLNPITYKSMIEIRQSQIDHRRLKSIKSAGDSLGF
HARLLNRSQLAGEFNQKQEIFRKNMELLGRINKTNRLKGGVDSFNRHFPA
LQSNRNKIRELADRLSQENRQLGCRLSQVKSKVDSHNPWVPPVKPLEQKA
SDETVSTFLPYMPSPRLGKRSAQILLRPIIYFDMAVRENNQFMGRLLLQL
YTELSPEVVLEFVRMATHNDVGCHRFVRIFSNLWMEAELVPAVHDSLHNH
HSVKYSFLDPSKITGVLSYPWDYRRHFPQGLLSYTISFKQSVIPWQRVIF
GRVCGGLRVLQNCHEFGTKNGKTKKTVIVTRCGLLASFLDH
BO08007.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32236-PA | 385 | CG32236-PA | 1..385 | 1..385 | 2001 | 100 | Plus |
| CG30350-PA | 369 | CG30350-PA | 48..369 | 75..385 | 301 | 28.3 | Plus |
| CG15767-PA | 370 | CG15767-PA | 79..370 | 124..385 | 230 | 29.3 | Plus |
| CG3492-PA | 404 | CG3492-PA | 243..404 | 225..385 | 215 | 34.8 | Plus |
