Clone BO08008 Report

Search the DGRC for BO08008

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:80
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptFaf-RA
Protein status:BO08008.pep: validated full length
Sequenced Size:1426

Clone Sequence Records

BO08008.3prime Sequence

920 bp (811 high quality bases) assembled on 2006-01-06

> BO08008.3prime
ATGGTCTAGAAAGCTTGCCGCTTCCAGATCGTTAACGAACAGCACCTCGC
GGTTCTTGAGTCCTACGGCCTGAAGGGTTTTGGTCAGCGTCTCCTTGGCT
GTGCCTGTTTCCCCAGCGGCATCCAAGTTCGCTTTCGAGAAGAGCACGCG
CTTCGGGAAATTCGTTGTGATCTCGAACTCATCCGGCGAATCGGGATGGC
AGAAGAGATAGTGATAAACGTCAAGCACCGAATCCGTCTGGTTAAATCGG
CGCTCTAGGCGTGTTCCACTGGGCAGCTTGAATACAACTGCAATGGCGCC
GACAGCATCCGCTGCCGGCTCGGATGGCACCAATGTGGCCAGCTCGATCT
TTTGCCGGGCAATCTCCTCCTTGCGAAGCTCGACATCGCGTCGAGCTTGT
TCCACAGCCTCCTCCGCCTGCCGGACGGCATCCCGCTCCCTTTGCCGCTG
ACGCTCCTTCTCCTCGTCCGCAAGCAAACTCTGCTCGTATGCCTCGTCCT
GCTGTCTTCTTAAAGTCTGTGTAAAATTCCGCTCTAAGCGATCTGCACGC
GCTTGACTCAGCCACACCTCGTTGGCGTTCGTCACCGACTGGAGGCGACG
GAGCAGCTCTTCGGGCGTGCAATCCCCCTCGAAACGTCCGACGATCATCA
TGCGATTTGCTCGAAGGCTGATCATCACCATCGTTGGGTAGCTGCGCACC
GTTATCGACTGCATCACCCGGTAGCCCTCCGGCGTGGCTACGTCGCATCC
CCATAACAGGGTGTGTGTGTTAATGTAGTCAATGACCGATCTCGCCGACA
GTGTGTTGCGGCAGAAGGATTCCACATCTGGGTTCTTGGCGGGATCCTTG
TGCAGGTAAACGATTAGAAAACGCAGCTCCTGCTTAGCATCGTTAAGGGC
CTGGGCATATGTGCCCTGAT

BO08008.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG10372-PA 1395 Faf-RA 491..1392 920..19 4510 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
Faf-RB 2279 CG10372-RB 852..1753 920..19 4510 100 Minus
Faf-RA 1978 CG10372-RA 941..1842 920..19 4510 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18706796..18707494 222..920 3495 100 Plus
2L 23513712 2L 18706536..18706739 19..222 1020 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:38:56 has no hits.

BO08008.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:35:03 Download gff for BO08008.3prime
Subject Subject Range Query Range Percent Splice Strand
Faf-PA 491..1395 15..920 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:24:07 Download gff for BO08008.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10372-PA 491..1395 15..920 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:05:51 Download gff for BO08008.3prime
Subject Subject Range Query Range Percent Splice Strand
Faf-RA 941..1845 15..920 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:54:41 Download gff for BO08008.3prime
Subject Subject Range Query Range Percent Splice Strand
Faf-RA 941..1845 15..920 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:54:41 Download gff for BO08008.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 18706533..18706739 15..222 99 <- Plus
2L 18706797..18707494 223..920 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:05:51 Download gff for BO08008.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18706533..18706739 15..222 99 <- Plus
arm_2L 18706797..18707494 223..920 100   Plus

BO08008.5prime Sequence

799 bp (797 high quality bases) assembled on 2006-01-06

> BO08008.5prime
GAAGTTATCAGTCGACATGGAAGCTGATGGACTGACCAACGAACAGACGG
AGAAGGTCCTCCAGTTCCAGGATCTCACCGGCATCGAGGATATGAACGTC
TGCCGCGACGTCCTAATCAGACACCAATGGGATCTCGAGGTGGCCTTCCA
GGAGCAGCTAAATATCCGCGAGGGGCGTCCGACCATGTTCGCCGCCTCTA
CAGATGTCCGAGCGCCCGCTGTCCTTAACGATCGCTTCCTGCAGCAGGTG
TTTTCCGCCAACATGCCTGGCGGAAGGACGGTTAGCCGGGTGCCCAGTGG
CCCCGTTCCCCGCAGCTTCACCGGCATCATTGGATATGTGATTAACTTCG
TGTTTCAGTACTTCTACTCCACGCTGACGAGCATCGTCAGTGCGTTTGTG
AACCTGGGCGGAGGAAACGAAGCCCGCTTGGTGACAGATCCACTGGGGGA
TGTGATGAAGTTTATTAGGGAATACTACGAAAGGTATCCCGAGCACCCGG
TCTTCTATCAGGGCACATATGCCCAGGCCCTTAACGATGCTAAGCAGGAG
CTGCGTTTTCTAATCGTTTACCTGCACAAGGATCCCGCCAAGAACCCAGA
TGTGGAATCCTTCTGCCGCAACACACTGTCGGCGAGATCGGTCATTGACT
ACATTAACACACACACCCTGTTATGGGGATGCGACGTAGCCACGCCGGAG
GGCTACCGGGTGATGCAGTCGATAACGGTGCGCAGCTACCCAACGATGGT
GATGATCAGCCTTCGAGCAAATCGCATGATGATCGTCGGACGTTTCGAG

BO08008.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10372-PA 1395 Faf-RA 1..783 17..799 3915 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
Faf-RB 2279 CG10372-RB 362..1144 17..799 3915 100 Plus
Faf-RA 1978 CG10372-RA 451..1233 17..799 3915 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18707202..18707863 799..138 3310 100 Minus
2L 23513712 2L 18708114..18708238 141..17 625 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:36:04 has no hits.

BO08008.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:35:04 Download gff for BO08008.5prime
Subject Subject Range Query Range Percent Splice Strand
Faf-PA 1..783 17..799 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:24:09 Download gff for BO08008.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10372-PA 1..783 17..799 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:38:00 Download gff for BO08008.5prime
Subject Subject Range Query Range Percent Splice Strand
Faf-RA 443..1233 9..799 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:17 Download gff for BO08008.5prime
Subject Subject Range Query Range Percent Splice Strand
Faf-RA 443..1233 9..799 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:17 Download gff for BO08008.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18707202..18707861 140..799 100 <- Minus
2L 18708116..18708246 9..139 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:38:00 Download gff for BO08008.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18707202..18707861 140..799 100 <- Minus
arm_2L 18708116..18708246 9..139 96   Minus

BO08008.complete Sequence

1426 bp (1426 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631014

> BO08008.complete
GAAGTTATCAGTCGACATGGAAGCTGATGGACTGACCAACGAACAGACGG
AGAAGGTCCTCCAGTTCCAGGATCTCACCGGCATCGAGGATATGAACGTC
TGCCGCGACGTCCTAATCAGACACCAATGGGATCTCGAGGTGGCCTTCCA
GGAGCAGCTAAATATCCGCGAGGGGCGTCCGACCATGTTCGCCGCCTCTA
CAGATGTCCGAGCGCCCGCTGTCCTTAACGATCGCTTCCTGCAGCAGGTG
TTTTCCGCCAACATGCCTGGCGGAAGGACGGTTAGCCGGGTGCCCAGTGG
CCCCGTTCCCCGCAGCTTCACCGGCATCATTGGATATGTGATTAACTTCG
TGTTTCAGTACTTCTACTCCACGCTGACGAGCATCGTCAGTGCGTTTGTG
AACCTGGGCGGAGGAAACGAAGCCCGCTTGGTGACAGATCCACTGGGGGA
TGTGATGAAGTTTATTAGGGAATACTACGAAAGGTATCCCGAGCACCCGG
TCTTCTATCAGGGCACATATGCCCAGGCCCTTAACGATGCTAAGCAGGAG
CTGCGTTTTCTAATCGTTTACCTGCACAAGGATCCCGCCAAGAACCCAGA
TGTGGAATCCTTCTGCCGCAACACACTGTCGGCGAGATCGGTCATTGACT
ACATTAACACACACACCCTGTTATGGGGATGCGACGTAGCCACGCCGGAG
GGCTACCGGGTGATGCAGTCGATAACGGTGCGCAGCTACCCAACGATGGT
GATGATCAGCCTTCGAGCAAATCGCATGATGATCGTCGGACGTTTCGAGG
GGGATTGCACGCCCGAAGAGCTGCTCCGTCGCCTCCAGTCGGTGACGAAC
GCCAACGAGGTGTGGCTGAGTCAAGCGCGTGCAGATCGCTTAGAGCGGAA
TTTTACACAGACTTTAAGAAGACAGCAGGACGAGGCATACGAGCAGAGTT
TGCTTGCGGACGAGGAGAAGGAGCGTCAGCGGCAAAGGGAGCGGGATGCC
GTCCGGCAGGCGGAGGAGGCTGTGGAACAAGCTCGACGCGATGTCGAGCT
TCGCAAGGAGGAGATTGCCCGGCAAAAGATCGAGCTGGCCACATTGGTGC
CATCCGAGCCGGCAGCGGATGCTGTCGGCGCCATTGCAGTTGTATTCAAG
CTGCCCAGTGGAACACGCCTAGAGCGCCGATTTAACCAGACGGATTCGGT
GCTTGACGTTTATCACTATCTCTTCTGCCATCCCGATTCGCCGGATGAGT
TCGAGATCACAACGAATTTCCCGAAGCGCGTGCTCTTCTCGAAAGCGAAC
TTGGATGCCGCTGGGGAAACAGGCACAGCCAAGGAGACGCTGACCAAAAC
CCTTCAGGCCGTAGGACTCAAGAACCGCGAGGTGCTGTTCGTTAACGATC
TGGAAGCGGCAAGCTTTCTAGACCAT

BO08008.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
Faf-RA 1395 CG10372-PA 1..1392 17..1408 6960 100 Plus
Faf-RB 1395 CG10372-PB 1..1392 17..1408 6960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
Faf-RB 2279 CG10372-RB 362..1753 17..1408 6960 100 Plus
Faf-RA 1978 CG10372-RA 451..1842 17..1408 6960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18706796..18707863 1205..138 5340 100 Minus
2L 23513712 2L 18706536..18706739 1408..1205 1020 100 Minus
2L 23513712 2L 18708114..18708238 141..17 625 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:47:06 has no hits.

BO08008.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:41 Download gff for BO08008.complete
Subject Subject Range Query Range Percent Splice Strand
Faf-RA 1..1395 17..1412 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:58 Download gff for BO08008.complete
Subject Subject Range Query Range Percent Splice Strand
Faf-RA 443..1845 9..1412 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:01 Download gff for BO08008.complete
Subject Subject Range Query Range Percent Splice Strand
Faf-RA 451..1842 17..1410 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:42 Download gff for BO08008.complete
Subject Subject Range Query Range Percent Splice Strand
Faf-RA 443..1845 9..1412 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:51 Download gff for BO08008.complete
Subject Subject Range Query Range Percent Splice Strand
Faf-RA 451..1842 17..1410 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:51 Download gff for BO08008.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18706534..18706739 1205..1410 99 <- Minus
2L 18706797..18707861 140..1204 100 <- Minus
2L 18708116..18708238 17..139 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:01 Download gff for BO08008.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18708116..18708238 17..139 100   Minus
arm_2L 18706534..18706739 1205..1410 99 <- Minus
arm_2L 18706797..18707861 140..1204 100 <- Minus

BO08008.pep Sequence

Translation from 16 to 1426

> BO08008.pep
MEADGLTNEQTEKVLQFQDLTGIEDMNVCRDVLIRHQWDLEVAFQEQLNI
REGRPTMFAASTDVRAPAVLNDRFLQQVFSANMPGGRTVSRVPSGPVPRS
FTGIIGYVINFVFQYFYSTLTSIVSAFVNLGGGNEARLVTDPLGDVMKFI
REYYERYPEHPVFYQGTYAQALNDAKQELRFLIVYLHKDPAKNPDVESFC
RNTLSARSVIDYINTHTLLWGCDVATPEGYRVMQSITVRSYPTMVMISLR
ANRMMIVGRFEGDCTPEELLRRLQSVTNANEVWLSQARADRLERNFTQTL
RRQQDEAYEQSLLADEEKERQRQRERDAVRQAEEAVEQARRDVELRKEEI
ARQKIELATLVPSEPAADAVGAIAVVFKLPSGTRLERRFNQTDSVLDVYH
YLFCHPDSPDEFEITTNFPKRVLFSKANLDAAGETGTAKETLTKTLQAVG
LKNREVLFVNDLEAASFLDH

BO08008.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
Faf-PB 464 CG10372-PB 1..464 1..464 2379 100 Plus
Faf-PA 464 CG10372-PA 1..464 1..464 2379 100 Plus
casp-PC 690 CG8400-PC 364..665 141..423 194 23.5 Plus
casp-PB 695 CG8400-PB 369..670 141..423 194 23.5 Plus
casp-PA 695 CG8400-PA 369..670 141..423 194 23.5 Plus