Clone Sequence Records
BO08008.3prime Sequence
920 bp (811 high quality bases) assembled on 2006-01-06
> BO08008.3prime
ATGGTCTAGAAAGCTTGCCGCTTCCAGATCGTTAACGAACAGCACCTCGC
GGTTCTTGAGTCCTACGGCCTGAAGGGTTTTGGTCAGCGTCTCCTTGGCT
GTGCCTGTTTCCCCAGCGGCATCCAAGTTCGCTTTCGAGAAGAGCACGCG
CTTCGGGAAATTCGTTGTGATCTCGAACTCATCCGGCGAATCGGGATGGC
AGAAGAGATAGTGATAAACGTCAAGCACCGAATCCGTCTGGTTAAATCGG
CGCTCTAGGCGTGTTCCACTGGGCAGCTTGAATACAACTGCAATGGCGCC
GACAGCATCCGCTGCCGGCTCGGATGGCACCAATGTGGCCAGCTCGATCT
TTTGCCGGGCAATCTCCTCCTTGCGAAGCTCGACATCGCGTCGAGCTTGT
TCCACAGCCTCCTCCGCCTGCCGGACGGCATCCCGCTCCCTTTGCCGCTG
ACGCTCCTTCTCCTCGTCCGCAAGCAAACTCTGCTCGTATGCCTCGTCCT
GCTGTCTTCTTAAAGTCTGTGTAAAATTCCGCTCTAAGCGATCTGCACGC
GCTTGACTCAGCCACACCTCGTTGGCGTTCGTCACCGACTGGAGGCGACG
GAGCAGCTCTTCGGGCGTGCAATCCCCCTCGAAACGTCCGACGATCATCA
TGCGATTTGCTCGAAGGCTGATCATCACCATCGTTGGGTAGCTGCGCACC
GTTATCGACTGCATCACCCGGTAGCCCTCCGGCGTGGCTACGTCGCATCC
CCATAACAGGGTGTGTGTGTTAATGTAGTCAATGACCGATCTCGCCGACA
GTGTGTTGCGGCAGAAGGATTCCACATCTGGGTTCTTGGCGGGATCCTTG
TGCAGGTAAACGATTAGAAAACGCAGCTCCTGCTTAGCATCGTTAAGGGC
CTGGGCATATGTGCCCTGAT
BO08008.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10372-PA | 1395 | Faf-RA | 491..1392 | 920..19 | 4510 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:38:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Faf-RB | 2279 | CG10372-RB | 852..1753 | 920..19 | 4510 | 100 | Minus |
Faf-RA | 1978 | CG10372-RA | 941..1842 | 920..19 | 4510 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:38:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18706796..18707494 | 222..920 | 3495 | 100 | Plus |
2L | 23513712 | 2L | 18706536..18706739 | 19..222 | 1020 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:38:56 has no hits.
BO08008.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:35:03 Download gff for
BO08008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Faf-PA | 491..1395 | 15..920 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:24:07 Download gff for
BO08008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10372-PA | 491..1395 | 15..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:05:51 Download gff for
BO08008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Faf-RA | 941..1845 | 15..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:54:41 Download gff for
BO08008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Faf-RA | 941..1845 | 15..920 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:54:41 Download gff for
BO08008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18706533..18706739 | 15..222 | 99 | <- | Plus |
2L | 18706797..18707494 | 223..920 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:05:51 Download gff for
BO08008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18706533..18706739 | 15..222 | 99 | <- | Plus |
arm_2L | 18706797..18707494 | 223..920 | 100 | | Plus |
BO08008.5prime Sequence
799 bp (797 high quality bases) assembled on 2006-01-06
> BO08008.5prime
GAAGTTATCAGTCGACATGGAAGCTGATGGACTGACCAACGAACAGACGG
AGAAGGTCCTCCAGTTCCAGGATCTCACCGGCATCGAGGATATGAACGTC
TGCCGCGACGTCCTAATCAGACACCAATGGGATCTCGAGGTGGCCTTCCA
GGAGCAGCTAAATATCCGCGAGGGGCGTCCGACCATGTTCGCCGCCTCTA
CAGATGTCCGAGCGCCCGCTGTCCTTAACGATCGCTTCCTGCAGCAGGTG
TTTTCCGCCAACATGCCTGGCGGAAGGACGGTTAGCCGGGTGCCCAGTGG
CCCCGTTCCCCGCAGCTTCACCGGCATCATTGGATATGTGATTAACTTCG
TGTTTCAGTACTTCTACTCCACGCTGACGAGCATCGTCAGTGCGTTTGTG
AACCTGGGCGGAGGAAACGAAGCCCGCTTGGTGACAGATCCACTGGGGGA
TGTGATGAAGTTTATTAGGGAATACTACGAAAGGTATCCCGAGCACCCGG
TCTTCTATCAGGGCACATATGCCCAGGCCCTTAACGATGCTAAGCAGGAG
CTGCGTTTTCTAATCGTTTACCTGCACAAGGATCCCGCCAAGAACCCAGA
TGTGGAATCCTTCTGCCGCAACACACTGTCGGCGAGATCGGTCATTGACT
ACATTAACACACACACCCTGTTATGGGGATGCGACGTAGCCACGCCGGAG
GGCTACCGGGTGATGCAGTCGATAACGGTGCGCAGCTACCCAACGATGGT
GATGATCAGCCTTCGAGCAAATCGCATGATGATCGTCGGACGTTTCGAG
BO08008.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10372-PA | 1395 | Faf-RA | 1..783 | 17..799 | 3915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:36:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Faf-RB | 2279 | CG10372-RB | 362..1144 | 17..799 | 3915 | 100 | Plus |
Faf-RA | 1978 | CG10372-RA | 451..1233 | 17..799 | 3915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:36:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18707202..18707863 | 799..138 | 3310 | 100 | Minus |
2L | 23513712 | 2L | 18708114..18708238 | 141..17 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:36:04 has no hits.
BO08008.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:35:04 Download gff for
BO08008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Faf-PA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:24:09 Download gff for
BO08008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10372-PA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:38:00 Download gff for
BO08008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Faf-RA | 443..1233 | 9..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:17 Download gff for
BO08008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Faf-RA | 443..1233 | 9..799 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:17 Download gff for
BO08008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18707202..18707861 | 140..799 | 100 | <- | Minus |
2L | 18708116..18708246 | 9..139 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:38:00 Download gff for
BO08008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18707202..18707861 | 140..799 | 100 | <- | Minus |
arm_2L | 18708116..18708246 | 9..139 | 96 | | Minus |
BO08008.complete Sequence
1426 bp (1426 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631014
> BO08008.complete
GAAGTTATCAGTCGACATGGAAGCTGATGGACTGACCAACGAACAGACGG
AGAAGGTCCTCCAGTTCCAGGATCTCACCGGCATCGAGGATATGAACGTC
TGCCGCGACGTCCTAATCAGACACCAATGGGATCTCGAGGTGGCCTTCCA
GGAGCAGCTAAATATCCGCGAGGGGCGTCCGACCATGTTCGCCGCCTCTA
CAGATGTCCGAGCGCCCGCTGTCCTTAACGATCGCTTCCTGCAGCAGGTG
TTTTCCGCCAACATGCCTGGCGGAAGGACGGTTAGCCGGGTGCCCAGTGG
CCCCGTTCCCCGCAGCTTCACCGGCATCATTGGATATGTGATTAACTTCG
TGTTTCAGTACTTCTACTCCACGCTGACGAGCATCGTCAGTGCGTTTGTG
AACCTGGGCGGAGGAAACGAAGCCCGCTTGGTGACAGATCCACTGGGGGA
TGTGATGAAGTTTATTAGGGAATACTACGAAAGGTATCCCGAGCACCCGG
TCTTCTATCAGGGCACATATGCCCAGGCCCTTAACGATGCTAAGCAGGAG
CTGCGTTTTCTAATCGTTTACCTGCACAAGGATCCCGCCAAGAACCCAGA
TGTGGAATCCTTCTGCCGCAACACACTGTCGGCGAGATCGGTCATTGACT
ACATTAACACACACACCCTGTTATGGGGATGCGACGTAGCCACGCCGGAG
GGCTACCGGGTGATGCAGTCGATAACGGTGCGCAGCTACCCAACGATGGT
GATGATCAGCCTTCGAGCAAATCGCATGATGATCGTCGGACGTTTCGAGG
GGGATTGCACGCCCGAAGAGCTGCTCCGTCGCCTCCAGTCGGTGACGAAC
GCCAACGAGGTGTGGCTGAGTCAAGCGCGTGCAGATCGCTTAGAGCGGAA
TTTTACACAGACTTTAAGAAGACAGCAGGACGAGGCATACGAGCAGAGTT
TGCTTGCGGACGAGGAGAAGGAGCGTCAGCGGCAAAGGGAGCGGGATGCC
GTCCGGCAGGCGGAGGAGGCTGTGGAACAAGCTCGACGCGATGTCGAGCT
TCGCAAGGAGGAGATTGCCCGGCAAAAGATCGAGCTGGCCACATTGGTGC
CATCCGAGCCGGCAGCGGATGCTGTCGGCGCCATTGCAGTTGTATTCAAG
CTGCCCAGTGGAACACGCCTAGAGCGCCGATTTAACCAGACGGATTCGGT
GCTTGACGTTTATCACTATCTCTTCTGCCATCCCGATTCGCCGGATGAGT
TCGAGATCACAACGAATTTCCCGAAGCGCGTGCTCTTCTCGAAAGCGAAC
TTGGATGCCGCTGGGGAAACAGGCACAGCCAAGGAGACGCTGACCAAAAC
CCTTCAGGCCGTAGGACTCAAGAACCGCGAGGTGCTGTTCGTTAACGATC
TGGAAGCGGCAAGCTTTCTAGACCAT
BO08008.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:47:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Faf-RA | 1395 | CG10372-PA | 1..1392 | 17..1408 | 6960 | 100 | Plus |
Faf-RB | 1395 | CG10372-PB | 1..1392 | 17..1408 | 6960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:47:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Faf-RB | 2279 | CG10372-RB | 362..1753 | 17..1408 | 6960 | 100 | Plus |
Faf-RA | 1978 | CG10372-RA | 451..1842 | 17..1408 | 6960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:47:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18706796..18707863 | 1205..138 | 5340 | 100 | Minus |
2L | 23513712 | 2L | 18706536..18706739 | 1408..1205 | 1020 | 100 | Minus |
2L | 23513712 | 2L | 18708114..18708238 | 141..17 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:47:06 has no hits.
BO08008.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:41 Download gff for
BO08008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Faf-RA | 1..1395 | 17..1412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:58 Download gff for
BO08008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Faf-RA | 443..1845 | 9..1412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:01 Download gff for
BO08008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Faf-RA | 451..1842 | 17..1410 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:42 Download gff for
BO08008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Faf-RA | 443..1845 | 9..1412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:51 Download gff for
BO08008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Faf-RA | 451..1842 | 17..1410 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:51 Download gff for
BO08008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18706534..18706739 | 1205..1410 | 99 | <- | Minus |
2L | 18706797..18707861 | 140..1204 | 100 | <- | Minus |
2L | 18708116..18708238 | 17..139 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:01 Download gff for
BO08008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18708116..18708238 | 17..139 | 100 | | Minus |
arm_2L | 18706534..18706739 | 1205..1410 | 99 | <- | Minus |
arm_2L | 18706797..18707861 | 140..1204 | 100 | <- | Minus |
BO08008.pep Sequence
Translation from 16 to 1426
> BO08008.pep
MEADGLTNEQTEKVLQFQDLTGIEDMNVCRDVLIRHQWDLEVAFQEQLNI
REGRPTMFAASTDVRAPAVLNDRFLQQVFSANMPGGRTVSRVPSGPVPRS
FTGIIGYVINFVFQYFYSTLTSIVSAFVNLGGGNEARLVTDPLGDVMKFI
REYYERYPEHPVFYQGTYAQALNDAKQELRFLIVYLHKDPAKNPDVESFC
RNTLSARSVIDYINTHTLLWGCDVATPEGYRVMQSITVRSYPTMVMISLR
ANRMMIVGRFEGDCTPEELLRRLQSVTNANEVWLSQARADRLERNFTQTL
RRQQDEAYEQSLLADEEKERQRQRERDAVRQAEEAVEQARRDVELRKEEI
ARQKIELATLVPSEPAADAVGAIAVVFKLPSGTRLERRFNQTDSVLDVYH
YLFCHPDSPDEFEITTNFPKRVLFSKANLDAAGETGTAKETLTKTLQAVG
LKNREVLFVNDLEAASFLDH
BO08008.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Faf-PB | 464 | CG10372-PB | 1..464 | 1..464 | 2379 | 100 | Plus |
Faf-PA | 464 | CG10372-PA | 1..464 | 1..464 | 2379 | 100 | Plus |
casp-PC | 690 | CG8400-PC | 364..665 | 141..423 | 194 | 23.5 | Plus |
casp-PB | 695 | CG8400-PB | 369..670 | 141..423 | 194 | 23.5 | Plus |
casp-PA | 695 | CG8400-PA | 369..670 | 141..423 | 194 | 23.5 | Plus |