Clone Sequence Records
BO08013.3prime Sequence
971 bp (840 high quality bases) assembled on 2006-01-06
> BO08013.3prime
ATGGTCTAGAAAGCTTGCAACGGACAAGGTCACTTGACTCCAAACAGTTT
TGTTGAGCACTTCAAAGGCCTGAATTTGTTCATTCAATTGGGCCAGTTTA
CTGAATATCAAATCGAACTTGGAATCAAAGTGCTGCACCACTGCTTTCAG
TTCATCGCGCAGTTTGTCCACCTCGCTGGGATCAGAACTACTTGTTATGG
GCGAGGACTCTACGCTGGCGGAGATTTCCGAAGAGGAGGAGGAGTCCACA
CCCTCTTTTTCGGGCAAGCGATACATGCAGGCTATTCCGTGAAAGTATTC
CCCCGGAAAATCGGGATCGTAGTTATCCACGGTATAGGCAATGCCATTGG
CACGAATGAGCACATCCATTATGTTTCTCAGGCTGAAGCAGTTCCAGTTA
TTTCCATGAATATAGAAGTGCGTTAGTTGCGTGAGCGTGGGGAACGCGGA
TGGATCGATTTCCGTCAAATTATTGCCGGATATGTCAAGTTTCTGCAAAT
TTTGCATACCCTGCAACGCCTCCAGCGGCAGTTCCATCTGGCCCGTATTC
CGCAGCACCAGCATCTCCAGATGTGGCGTCCGCCAACCGTCGGGCAACTG
ACCCAGGTTCGGATTGTCCGCCACATCCAGGTGCCGGAGTCTGGGCACGC
GGCTCAACGACGCCAGCTGAACCAGCGAGTTGTTGCGCAGCACCAAATGC
TCCAGTGCCTCGGAGGCGGGAAAGTACAGCTCGCGCACGCGATTGTCGCT
CAGATCGACATTCGTCACCGATCCGTACAAATTGACACGGTCCAGCGAGC
AATTGCGAGCGGTCAAATTGGTGGCGTTAATGTTCAGCAGTAGAACGACC
AGCTCGGGGTTATTCGATAGATCCACATACTGCATCTGATGGTGTCGTCC
GCGGGATCGAAAGGCATACTCGCCCCACTCTCGCAGTCGATTGTTCTGCA
TTGCGACCGAACAAAGGTCCG
BO08013.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10824-PA | 1665 | CG10824-RA | 721..1662 | 960..19 | 4660 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:09:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10824-RA | 1855 | CG10824-RA | 748..1700 | 971..19 | 4705 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:09:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21159393..21160345 | 19..971 | 4705 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:09:01 has no hits.
BO08013.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:35:12 Download gff for
BO08013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10824-PA | 710..1665 | 16..971 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:24:21 Download gff for
BO08013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10824-PA | 710..1665 | 16..971 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:47:07 Download gff for
BO08013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10824-RA | 748..1711 | 7..971 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:08:23 Download gff for
BO08013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10824-RA | 748..1711 | 7..971 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:08:23 Download gff for
BO08013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21159382..21160345 | 7..971 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:47:07 Download gff for
BO08013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16985104..16986067 | 7..971 | 99 | | Plus |
BO08013.5prime Sequence
889 bp (870 high quality bases) assembled on 2006-01-06
> BO08013.5prime
GAAGTTATCAGTCGACATGTACGTCCGGAATTGTCTGCCGTTCCTCTGCA
GCTATTTGCTGATCTCATTGGCGGCCACAGCTACTACGGATGAGGACGCG
GATGCTGATGTGGATAGTGGCTCATCCCGAATAGTGCTGGTCTCCAGCTT
GGAAGGTCATTGCCAGACGGAGGGCAAGGTGACCAGCTGCAGGGGCTTTG
AGTTTGCGGGAGAGGACGAGAAGGCCACCTTTGATCTGCCAACGGAGGTG
CGGATTGCCGAGGATGGCACCACCTACGAAGTGGGCGATGAGGAGCACTC
GCGAACCCTGATCTTCGAGAACTGCACCTTCACCAATTTTCCCCTGCGCT
TATTTTACACACTAGAGGTCAGTGAGCTGGACATGCGCGGCTGTGGCATC
CGCTTCATTTACTGGGAGAACTTCTCCATTGGTGCGGATAAGCTGGTGAT
TCTTCTGCTCAGCGATAATCACATCGAAGTGCTGCCCACGAAAACCTTCA
GGGGAGCAGGAAACTTGGAGTTTATCTTCCTGAATCGCAACAAACTAGGC
AAACTGCAGGCGGGTGCGTTTGATAATCTCCTGAAATTACAGTACCTGGA
TCTCACAGAGAATCGCCTGGAGGCTTTAGCCGCGGACGTATTTGCCGGAC
TGAAGAGTCTGCGGCACGTGGGACTGGCCGGTAATCAACTGACCACCATT
GAGAGCGATTTATTTGCCCACAATCCGGACCTTTTGTCGGTCGCAATGCA
GAACAATCGACTGCGAGAGGTGGGCGAGTATGCCTTTCGATCCCGCGGAC
GACACCATCAGATGCAGTATGTGGATCTATCGAATAACCCCGAGCTGGTC
GTTCTACTGCTGAACATTAACGCCACCAATTTGACCGCT
BO08013.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10824-PA | 1665 | CG10824-RA | 1..873 | 17..889 | 4365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:41:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10824-RA | 1855 | CG10824-RA | 39..911 | 17..889 | 4365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:41:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21160182..21161054 | 889..17 | 4365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:41:48 has no hits.
BO08013.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:35:13 Download gff for
BO08013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10824-PA | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:24:22 Download gff for
BO08013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10824-PA | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:08:47 Download gff for
BO08013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10824-RA | 39..911 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:21:07 Download gff for
BO08013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10824-RA | 39..911 | 17..889 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:21:07 Download gff for
BO08013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21160182..21161054 | 17..889 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:08:47 Download gff for
BO08013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16985904..16986776 | 17..889 | 100 | | Minus |
BO08013.complete Sequence
1696 bp (1696 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631015
> BO08013.complete
GAAGTTATCAGTCGACATGTACGTCCGGAATTGTCTGCCGTTCCTCTGCA
GCTATTTGCTGATCTCATTGGCGGCCACAGCTACTACGGATGAGGACGCG
GATGCTGATGTGGATAGTGGCTCATCCCGAATAGTGCTGGTCTCCAGCTT
GGAAGGTCATTGCCAGACGGAGGGCAAGGTGACCAGCTGCAGGGGCTTTG
AGTTTGCGGGAGAGGACGAGAAGGCCACCTTTGATCTGCCAACGGAGGTG
CGGATTGCCGAGGATGGCACCACCTACGAAGTGGGCGATGAGGAGCACTC
GCGAACCCTGATCTTCGAGAACTGCACCTTCACCAATTTTCCCCTGCGCT
TATTTTACACACTAGAGGTCAGTGAGCTGGACATGCGCGGCTGTGGCATC
CGCTTCATTTACTGGGAGAACTTCTCCATTGGTGCGGATAAGCTGGTGAT
TCTTCTGCTCAGCGATAATCACATCGAAGTGCTGCCCACGAAAACCTTCA
GGGGAGCAGGAAACTTGGAGTTTATCTTCCTGAATCGCAACAAACTAGGC
AAACTGCAGGCGGGTGCGTTTGATAATCTCCTGAAATTACAGTACCTGGA
TCTCACAGAGAATCGCCTGGAGGCTTTAGCCGCGGACGTATTTGCCGGAC
TGAAGAGTCTGCGGCACGTGGGACTGGCCGGTAATCAACTGACCACCATT
GAGAGCGATTTATTTGCCCACAATCCGGACCTTTTGTCGGTCGCAATGCA
GAACAATCGACTGCGAGAGGTGGGCGAGTATGCCTTTCGATCCCGCGGAC
GACACCATCAGATGCAGTATGTGGATCTATCGAATAACCCCGAGCTGGTC
GTTCTACTGCTGAACATTAACGCCACCAATTTGACCGCTCGCAATTGCTC
GCTGGACCGTGTCAATTTGTACGGATCGGTGACGAATGTCGATCTGAGCG
ACAATCGCGTGCGCGAGCTGTACTTTCCCGCCTCCGAGGCACTGGAGCAT
TTGGTGCTGCGCAACAACTCGCTGGTTCAGCTGGCGTCGTTGAGCCGCGT
GCCCAGACTCCGGCACCTGGATGTGGCGGACAATCCGAACCTGGGTCAGT
TGCCCGACGGTTGGCGGACGCCACATCTGGAGATGCTGGTGCTGCGGAAT
ACGGGCCAGATGGAACTGCCGCTGGAGGCGTTGCAGGGTATGCAAAATTT
GCAGAAACTTGACATATCCGGCAATAATTTGACGGAAATCGATCCATCCG
CGTTCCCCACGCTCACGCAACTAACGCACTTCTATATTCATGGAAATAAC
TGGAACTGCTTCAGCCTGAGAAACATAATGGATGTGCTCATTCGTGCCAA
TGGCATTGCCTATACCGTGGATAACTACGATCCCGATTTTCCGGGGGAAT
ACTTTCACGGAATAGCCTGCATGTATCGCTTGCCCGAAAAAGAGGGTGTG
GACTCCTCCTCCTCTTCGGAAATCTCCGCCAGCGTAGAGTCCTCGCCCAT
AACAAGTAGTTCTGATCCCAGCGAGGTGGACAAACTGCGCGATGAACTGA
AAGCAGTGGTGCAGCACTTTGATTCCAAGTTCGATTTGATATTCAGTAAA
CTGGCCCAATTGAATGAACAAATTCAGGCCTTTGAAGTGCTCAACAAAAC
TGTTTGGAGTCAAGTGACCTTGTCCGTTGCAAGCTTTCTAGACCAT
BO08013.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10824-RA | 1665 | CG10824-PA | 1..1662 | 17..1678 | 8310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10824-RA | 1855 | CG10824-RA | 39..1700 | 17..1678 | 8310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:00:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21159393..21161054 | 1678..17 | 8310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:00:23 has no hits.
BO08013.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:41 Download gff for
BO08013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10824-RA | 1..1665 | 17..1681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:21 Download gff for
BO08013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10824-RA | 40..1712 | 17..1690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:37:56 Download gff for
BO08013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10824-RA | 39..1700 | 17..1680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:42 Download gff for
BO08013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10824-RA | 40..1712 | 17..1690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:48 Download gff for
BO08013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10824-RA | 39..1700 | 17..1680 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:48 Download gff for
BO08013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21159390..21161054 | 17..1680 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:37:56 Download gff for
BO08013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16985112..16986776 | 17..1680 | 99 | | Minus |
BO08013.pep Sequence
Translation from 16 to 1696
> BO08013.pep
MYVRNCLPFLCSYLLISLAATATTDEDADADVDSGSSRIVLVSSLEGHCQ
TEGKVTSCRGFEFAGEDEKATFDLPTEVRIAEDGTTYEVGDEEHSRTLIF
ENCTFTNFPLRLFYTLEVSELDMRGCGIRFIYWENFSIGADKLVILLLSD
NHIEVLPTKTFRGAGNLEFIFLNRNKLGKLQAGAFDNLLKLQYLDLTENR
LEALAADVFAGLKSLRHVGLAGNQLTTIESDLFAHNPDLLSVAMQNNRLR
EVGEYAFRSRGRHHQMQYVDLSNNPELVVLLLNINATNLTARNCSLDRVN
LYGSVTNVDLSDNRVRELYFPASEALEHLVLRNNSLVQLASLSRVPRLRH
LDVADNPNLGQLPDGWRTPHLEMLVLRNTGQMELPLEALQGMQNLQKLDI
SGNNLTEIDPSAFPTLTQLTHFYIHGNNWNCFSLRNIMDVLIRANGIAYT
VDNYDPDFPGEYFHGIACMYRLPEKEGVDSSSSSEISASVESSPITSSSD
PSEVDKLRDELKAVVQHFDSKFDLIFSKLAQLNEQIQAFEVLNKTVWSQV
TLSVASFLDH
BO08013.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:37:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10824-PA | 554 | CG10824-PA | 1..554 | 1..554 | 2855 | 100 | Plus |
| alrm-PA | 471 | CG11910-PA | 70..471 | 98..536 | 399 | 29.3 | Plus |
| CG5810-PA | 428 | CG5810-PA | 67..400 | 97..439 | 308 | 30.3 | Plus |
| CG4950-PB | 574 | CG4950-PB | 77..536 | 100..558 | 280 | 25.4 | Plus |
| CG4950-PC | 574 | CG4950-PC | 77..536 | 100..558 | 280 | 25.4 | Plus |
