Clone Sequence Records
BO08020.3prime Sequence
976 bp (813 high quality bases) assembled on 2006-01-06
> BO08020.3prime
ATGGTCTAGAAAGCTTGCGGAAAGTACAGCATCGCTGAACCAAAATGTCA
TACGATCCCCATCGGTAAGTTTTTGAGGTACTTTGATCGAGTGATTCCGT
GCCACGGAGTTGTAACGCCTAAAGTTTTCATTTCCGGCGTTTAGGCGATC
CGCCATTTCGGCAGCCTGCTGGTTCAAGGACTGTCTGTAGGATAAAGCTG
CTTCCGAATGAATATAGCTGGGGCCATCCTTGGATTCAGGTAGTACATTT
GACTTGTTGGTCTTTGAAGGGACACGATCATTCCAAGAGTCTTGCCTTGC
ATTACTTGTGGCAACAACAGACGGGGCTTGTTCTTGAGAACTGGTCAGCT
TCTTATCTTGCATTTTAAAATCGGAATGCTTTGGTTTTGCAGATTTTAGA
GATTGTTTCGAGTCTGAGTCAGCAGGATTTAATTTGAAGGAGCGCTGCGT
TCCAGTTTCTGATGGCTTATTTGAAACTTTTGATTTCATTGTGGTAGAGG
AAGCTTTGGCTGCTTCTGAGAAATGTTTCGACTTCAAAATTGACTTCGGA
GTGAGGGTGGTATTTGAGGAAATACTGTTGCCTATTGCAGATCGTTTCAA
TGTTATGTTCGAAGACTTTGAGGCCACGTCACCCTCACTTTGCTTATTTG
TGCAGCTCGTCTTGGATGCCGCACTGAATTGTGATATGGATAATTTGGAA
TTTGCTCTACCATCACCACTGACCTGACGGTTTGACCTTATTGGCATTAG
GGTGCGCAAAGAGTCCTTTGAAACCGCTTCCTTTGATTGAGATACCTTGG
ACAGCTTCGTTGTTGAAACACCACCCGCATCAATGCGATCTTTTTCATTG
AGAACTTCGGCCTGCTTCTTGGCCACGGCCATCTCTTCATTGATGGGCTT
GGAAATGTCACCTCGCCGATAGTCGACTTGCCTATACTTTGGGTGCTCTT
CCGGGGAACCAACTCCTCTGATGGGT
BO08020.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4983-PA | 1104 | CG4983-RA | 211..1101 | 909..19 | 4430 | 99.8 | Minus |
| CG4983-PA | 1104 | CG4983-RA | 145..210 | 974..909 | 280 | 96.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:02:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4983-RB | 1666 | CG4983-RB | 301..1257 | 974..19 | 4715 | 99.6 | Minus |
| CG4983-RA | 1330 | CG4983-RA | 292..1248 | 974..19 | 4715 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:02:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11652799..11653755 | 974..19 | 4690 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:02:11 has no hits.
BO08020.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:35:27 Download gff for
BO08020.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4983-PA | 143..1104 | 18..976 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:24:41 Download gff for
BO08020.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4983-PA | 143..1104 | 18..976 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:24:07 Download gff for
BO08020.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4983-RA | 290..1248 | 19..976 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:25:38 Download gff for
BO08020.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4983-RA | 290..1248 | 19..976 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:25:38 Download gff for
BO08020.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11652797..11653755 | 19..976 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:24:07 Download gff for
BO08020.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11652797..11653755 | 19..976 | 99 | | Minus |
BO08020.5prime Sequence
873 bp (737 high quality bases) assembled on 2006-01-06
> BO08020.5prime
GAAGTTATCAGTCGACATGTTTCCTGATGACTTCGACGTAGAACCCTTCA
ATCCATTCAATGTGGGACCACCCAATAGTGGAGCCCGATCTGAATTCAAA
ATACCTACATGCGTTACGTATCCGCCACCGGTATTCGTACCCAAGTCCGA
ATATGTACAACCATCAGAGGAGTTGGTTTCCCGGAAGAGCAACCAAAGTA
TAGGCAAGTCGACTATCGGCGAGGTGGACATTTCCAAGGCCATCAATGAA
GAGATGGCCGTGGCCAAGAAGCAGGCCGAAGTTCTCAATGAAAAAGATCG
CATTGATGCGGGTGGTGTTTCAACAACGAAGCTGTCCAAGGTATCTCAAT
CAAAGGAAGCGGTTTCAAAGGACTCTTTGCGCACCCTAATGCCAATAAGG
TCAAACCGTCAGGTCAGTGGTGATGGTAGAGCAAATTCCAAATTATCCAT
ATCACAATTCAGTGCGGCATCCAAGACGAGCTGCACAAATAAGCAAAGTG
AGGGTGACGTGGCCTCAAAGTCTTCGAACATAACATTGAAACGATCTGCA
ATAGGCAACAGTATTTCCTCAAATACCACCCTCACTCCGAAGTCAATTTT
GAAGTCGAAACATTTCTCAGAAGCAGCCAAAGCTTCCTCTACCACAATGA
AATCAAAAGTTTCAAATAAGCCATCAGAAACTGGAACGCAGCGCTCCTTC
AAATTAAATCCTGCTGACTCAGACTCGAAACAATCTCTAAAATCTGCAAA
ACCAAAGCATTCCGATTTTAAAATGCAAGATAAGAAGCTGACCAGTTCTC
AAGAACAAGCCCCGTCTGTTGTTGCCCACAGTAATGCAAGGCAAGACTCT
TGGAATGATCGTGTCCCTTCAAA
BO08020.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4983-PA | 1104 | CG4983-RA | 1..810 | 17..826 | 4050 | 100 | Plus |
| CG4983-PA | 1104 | CG4983-RA | 814..857 | 830..873 | 220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:31:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4983-RB | 1666 | CG4983-RB | 155..1013 | 15..873 | 4250 | 99.8 | Plus |
| CG4983-RA | 1330 | CG4983-RA | 146..1004 | 15..873 | 4250 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:31:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11652653..11653511 | 15..873 | 4250 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:31:26 has no hits.
BO08020.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:35:28 Download gff for
BO08020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4983-PA | 1..854 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:24:43 Download gff for
BO08020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4983-PA | 1..854 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:09:50 Download gff for
BO08020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4983-RA | 146..1001 | 15..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:45:40 Download gff for
BO08020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4983-RA | 146..1001 | 15..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:45:40 Download gff for
BO08020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11652653..11653508 | 15..870 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:09:50 Download gff for
BO08020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11652653..11653508 | 15..870 | 99 | | Plus |
BO08020.complete Sequence
1135 bp (1135 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631017
> BO08020.complete
GAAGTTATCAGTCGACATGTTTCCTGATGACTTCGACGTAGAACCCTTCA
ATCCATTCAATGTGGGACCACCCAATAGTGGAGCCCGATCTGAATTCAAA
ATACCTACATGCGTTACGTATCCGCCACCGGTATTCGTACCCAAGTCCGA
ATATGTACAACCATCAGAGGAGTTGGTTTCCCGGAAGAGCAACCAAAGTA
TAGGCAAGTCGACTATCGGCGAGGTGGACATTTCCAAGGCCATCAATGAA
GAGATGGCCGTGGCCAAGAAGCAGGCCGAAGTTCTCAATGAAAAAGATCG
CATTGATGCGGGTGGTGTTTCAACAACGAAGCTGTCCAAGGTATCTCAAT
CAAAGGAAGCGGTTTCAAAGGACTCTTTGCGCACCCTAATGCCAATAAGG
TCAAACCGTCAGGTCAGTGGTGATGGTAGAGCAAATTCCAAATTATCCAT
ATCACAATTCAGTGCGGCATCCAAGACGAGCTGCACAAATAAGCAAAGTG
AGGGTGACGTGGCCTCAAAGTCTTCGAACATAACATTGAAACGATCTGCA
ATAGGCAACAGTATTTCCTCAAATACCACCCTCACTCCGAAGTCAATTTT
GAAGTCGAAACATTTCTCAGAAGCAGCCAAAGCTTCCTCTACCACAATGA
AATCAAAAGTTTCAAATAAGCCATCAGAAACTGGAACGCAGCGCTCCTTC
AAATTAAATCCTGCTGACTCAGACTCGAAACAATCTCTAAAATCTGCAAA
ACCAAAGCATTCCGATTTTAAAATGCAAGATAAGAAGCTGACCAGTTCTC
AAGAACAAGCCCCGTCTGTTGTTGCCACAAGTAATGCAAGGCAAGACTCT
TGGAATGATCGTGTCCCTTCAAAGACCAACAAGTCAAATGTACTACCTGA
ATCCAAGGATGGCCCCAGCTATATTCATTCGGAAGCAGCTTTATCCTACA
GACAGTCCTTGAACCAGCAGGCTGCCGAAATGGCGGATCGCCTAAACGCC
GGAAATGAAAACTTTAGGCGTTACAACTCCGTGGCACGGAATCACTCGAT
CAAAGTACCTCAAAAACTTACCGATGGGGATCGTATGACATTTTGGTTCA
GCGATGCTGTACTTTCCGCAAGCTTTCTAGACCAT
BO08020.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:51:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4983-RB | 1104 | CG4983-PB | 1..1101 | 17..1117 | 5505 | 100 | Plus |
| CG4983-RA | 1104 | CG4983-PA | 1..1101 | 17..1117 | 5505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:51:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4983-RB | 1666 | CG4983-RB | 155..1257 | 15..1117 | 5515 | 100 | Plus |
| CG4983-RA | 1330 | CG4983-RA | 146..1248 | 15..1117 | 5515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:51:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11652653..11653755 | 15..1117 | 5515 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:51:17 has no hits.
BO08020.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:42 Download gff for
BO08020.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4983-RA | 1..1104 | 17..1118 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:00 Download gff for
BO08020.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4983-RA | 146..1248 | 15..1117 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:00:55 Download gff for
BO08020.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4983-RA | 154..1248 | 23..1119 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:43 Download gff for
BO08020.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4983-RA | 146..1248 | 15..1117 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:46 Download gff for
BO08020.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4983-RA | 154..1248 | 23..1119 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:46 Download gff for
BO08020.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11652661..11653755 | 23..1119 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:00:55 Download gff for
BO08020.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11652661..11653755 | 23..1119 | 99 | | Plus |
BO08020.pep Sequence
Translation from 16 to 1135
> BO08020.pep
MFPDDFDVEPFNPFNVGPPNSGARSEFKIPTCVTYPPPVFVPKSEYVQPS
EELVSRKSNQSIGKSTIGEVDISKAINEEMAVAKKQAEVLNEKDRIDAGG
VSTTKLSKVSQSKEAVSKDSLRTLMPIRSNRQVSGDGRANSKLSISQFSA
ASKTSCTNKQSEGDVASKSSNITLKRSAIGNSISSNTTLTPKSILKSKHF
SEAAKASSTTMKSKVSNKPSETGTQRSFKLNPADSDSKQSLKSAKPKHSD
FKMQDKKLTSSQEQAPSVVATSNARQDSWNDRVPSKTNKSNVLPESKDGP
SYIHSEAALSYRQSLNQQAAEMADRLNAGNENFRRYNSVARNHSIKVPQK
LTDGDRMTFWFSDAVLSASFLDH
BO08020.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4983-PB | 367 | CG4983-PB | 1..367 | 1..367 | 1846 | 100 | Plus |
| CG4983-PA | 367 | CG4983-PA | 1..367 | 1..367 | 1846 | 100 | Plus |
