Clone Sequence Records
BO08021.3prime Sequence
893 bp (892 high quality bases) assembled on 2006-01-06
> BO08021.3prime
ATGGTCTAGAAAGCTTGCGAAGTATTCGCCAGCAGCCTTGTACGATCTCG
GGCAATTTTGTTCGGCATACAAGGCGTAGGCGTTCTTAGATCCTATTTTG
ATAGGCAGCTTGCTCGAGTGCTTATTCCACACATGCACTACATACGAGTC
CTTGCACCGGGCGATTGTCTCTTCTAAGTTTTCCGGCTCAAAGAAGTCTC
GCCACTGCTTCCACGGTACGGCGTAAAAGGCGCCCCGTCCGAATACTTTG
AAGCCCATGCAGCGCTTGGGGTCCTCTCGCATCAGAGCAATGTCTTTGGT
GCCACATATCTTCTGAGCCACACGGGTTATCACCCCTGGGCCATTGTTGC
CCCAGTCCCCGCCGTTAAAGTTGTGCTGAAAGTCGCGCAAACAGGACGCG
GCGATCTCGTGGCCAAAGCCAGTGGCTGCCAGGTTCATTACGCCAGCTGC
CAAATGGGTGTTGGACTCAGCACCTGTGTAATTGGGCGGCACCTTCTCCA
TGTTGCGAAGCACCACCACATCCATGTCCAGATAAAGACCGCCATACCGA
TAGAGGGTAAGGTAGCGGAGAAAGTCTGATATGTGCGAGAACAAATATTT
TGACCGCGACAAACGACCATCTTTGAGCCACTCCTCCATGGGCGTGCCAG
ATGCGTAACTCTCGAGATTCAGTCGACGTAGATGGACATTGCTGTAACTG
AGAATGGCCTCCAACAATGGTTGGGGATGGCTTTTGTTGTTGGAGATTCG
ATAGGTGGGGCCAGCGAACAGGACGAACACTTGGAAATTCGGATTATGCA
TCGCTGCCGACTCGATTGCGCATGCCTGGCGGGCAGTGACCTTCAGCGTC
TCCAGCTGTCTGTTCTCGGATAGGCGGCAGCTGGTCTCGTGAA
BO08021.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17223-PA | 1110 | alpha4GT1-RA | 233..1107 | 893..19 | 4375 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:39:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha4GT1-RA | 1714 | CG17223-RA | 360..1234 | 893..19 | 4375 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:39:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3021789..3022368 | 19..598 | 2900 | 100 | Plus |
| 2L | 23513712 | 2L | 3022423..3022717 | 599..893 | 1475 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:39:10 has no hits.
BO08021.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:35:28 Download gff for
BO08021.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17223-PA | 235..1110 | 18..891 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:24:45 Download gff for
BO08021.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17223-PA | 235..1110 | 18..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:05:54 Download gff for
BO08021.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha4GT1-RA | 360..1234 | 19..893 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:54:58 Download gff for
BO08021.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha4GT1-RA | 360..1234 | 19..893 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:54:58 Download gff for
BO08021.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3021789..3022368 | 19..598 | 100 | <- | Plus |
| 2L | 3022423..3022717 | 599..893 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:05:54 Download gff for
BO08021.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3021789..3022368 | 19..598 | 100 | <- | Plus |
| arm_2L | 3022423..3022717 | 599..893 | 100 | | Plus |
BO08021.5prime Sequence
868 bp (826 high quality bases) assembled on 2006-01-06
> BO08021.5prime
GAAGTTATCAGTCGACATGCTCCTCTGGTTGCCCATTGCGGTGGCACGCA
GGATGTTCATCATCCTCGTCCTAATGGTAATTGGAGGCCTCTTCTACATC
TACACTTCGGAAAATAAATACCACTCATGCTTTATGGAGGGCCAAGTACT
GGCAACTCAGCAGGCGCTAACTGCAGATGGCGAAACAAATCTATTGGGCG
ACGTCCTCCAGGCGGATCCCAAACCCTCGCCCGGAAACAGTATCTTCTTT
CACGAGACCAGCTGCCGCCTATCCGAGAACAGACAGCTGGAGACGCTGAA
GGTCACTGCCCGCCAGGCATGCGCAATCGAGTCGGCAGCGATGCATAATC
CGAATTTCCAAGTGTTCGTCCTGTTCGCTGGCCCCACCTATCGAATCTCC
AACAACAAAAGCCATCCCCAACCATTGTTGGAGGCCATTCTCAGTTACAG
CAATGTCCATCTACGTCGACTGAATCTCGAGAGTTACGCATCTGGCACGC
CCATGGAGGAGTGGCTCAAAGATGGTCGTTTGTCGCGGTCAAAATATTTG
TTCTCGCACATATCAGACTTTCTCCGCTACCTTACCCTCTATCGGTATGG
CGGTCTTTATCTGGACATGGATGTGGTGGTGCTTCGCAACATGGAGAAGG
TGCCGCCCAATTACACAGGTGCTGAGTCCAACACCCATTTGGCAGCTGGC
GTAATGAACCTGGCAGCCACTGGCTTTGGCCACGAGATCGCCGCGTCCTG
TTTGCGCGACTTTCAGCACAACTTTAACGGCGGGGACTGGGGCAACAATG
GCCCAGGGGTGATAACCCGTGTGGCTCAGAAGATATGTGGCACCAAAGAC
ATTGCTCTGATGCGAGAG
BO08021.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17223-PA | 1110 | alpha4GT1-RA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:21:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha4GT1-RA | 1714 | CG17223-RA | 127..979 | 16..868 | 4265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:21:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3022423..3022950 | 543..16 | 2640 | 100 | Minus |
| 2L | 23513712 | 2L | 3022044..3022368 | 868..544 | 1625 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:21:54 has no hits.
BO08021.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:35:29 Download gff for
BO08021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17223-PA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:24:46 Download gff for
BO08021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17223-PA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:31:49 Download gff for
BO08021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha4GT1-RA | 123..979 | 9..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:42:50 Download gff for
BO08021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha4GT1-RA | 123..979 | 9..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:42:50 Download gff for
BO08021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3022044..3022368 | 544..868 | 100 | <- | Minus |
| 2L | 3022423..3022954 | 9..543 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:31:49 Download gff for
BO08021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3022044..3022368 | 544..868 | 100 | <- | Minus |
| arm_2L | 3022423..3022954 | 9..543 | 99 | | Minus |
BO08021.complete Sequence
1141 bp (1141 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631018
> BO08021.complete
GAAGTTATCAGTCGACATGCTCCTCTGGTTGCCCATTGCGGTGGCACGCA
GGATGTTCATCATCCTCGTCCTAATGGTAATTGGAGGCCTCTTCTACATC
TACACTTCGGAAAATAAATACCACTCATGCTTTATGGAGGGCCAAGTACT
GGCAACTCAGCAGGCGCTAACTGCAGATGGCGAAACAAATCTATTGGGCG
ACGTCCTCCAGGCGGATCCCAAACCCTCGCCCGGAAACAGTATCTTCTTT
CACGAGACCAGCTGCCGCCTATCCGAGAACAGACAGCTGGAGACGCTGAA
GGTCACTGCCCGCCAGGCATGCGCAATCGAGTCGGCAGCGATGCATAATC
CGAATTTCCAAGTGTTCGTCCTGTTCGCTGGCCCCACCTATCGAATCTCC
AACAACAAAAGCCATCCCCAACCATTGTTGGAGGCCATTCTCAGTTACAG
CAATGTCCATCTACGTCGACTGAATCTCGAGAGTTACGCATCTGGCACGC
CCATGGAGGAGTGGCTCAAAGATGGTCGTTTGTCGCGGTCAAAATATTTG
TTCTCGCACATATCAGACTTTCTCCGCTACCTTACCCTCTATCGGTATGG
CGGTCTTTATCTGGACATGGATGTGGTGGTGCTTCGCAACATGGAGAAGG
TGCCGCCCAATTACACAGGTGCTGAGTCCAACACCCATTTGGCAGCTGGC
GTAATGAACCTGGCAGCCACTGGCTTTGGCCACGAGATCGCCGCGTCCTG
TTTGCGCGACTTTCAGCACAACTTTAACGGCGGGGACTGGGGCAACAATG
GCCCAGGGGTGATAACCCGTGTGGCTCAGAAGATATGTGGCACCAAAGAC
ATTGCTCTGATGCGAGAGGACCCCAAGCGCTGCATGGGCTTCAAAGTATT
CGGACGGGGCGCCTTTTACGCCGTACCGTGGAAGCAGTGGCGAGACTTCT
TTGAGCCGGAAAACTTAGAAGAGACAATCGCCCGGTGCAAGGACTCGTAT
GTAGTGCATGTGTGGAATAAGCACTCGAGCAAGCTGCCTATCAAAATAGG
ATCTAAGAACGCCTACGCCTTGTATGCCGAACAAAATTGCCCGAGATCGT
ACAAGGCTGCTGGCGAATACTTCGCAAGCTTTCTAGACCAT
BO08021.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:38:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha4GT1-RA | 1110 | CG17223-PA | 1..1107 | 17..1123 | 5535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:39:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha4GT1-RA | 1714 | CG17223-RA | 127..1234 | 16..1123 | 5540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:38:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3021789..3022368 | 1123..544 | 2900 | 100 | Minus |
| 2L | 23513712 | 2L | 3022423..3022950 | 543..16 | 2640 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:38:58 has no hits.
BO08021.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:44 Download gff for
BO08021.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha4GT1-RA | 1..1110 | 17..1124 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:01 Download gff for
BO08021.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha4GT1-RA | 130..1241 | 9..1123 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:27:28 Download gff for
BO08021.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha4GT1-RA | 128..1234 | 17..1125 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:44 Download gff for
BO08021.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha4GT1-RA | 130..1241 | 9..1123 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:20 Download gff for
BO08021.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha4GT1-RA | 128..1234 | 17..1125 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:20 Download gff for
BO08021.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3021787..3022368 | 544..1125 | 99 | <- | Minus |
| 2L | 3022423..3022949 | 17..543 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:27:28 Download gff for
BO08021.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3021787..3022368 | 544..1125 | 99 | <- | Minus |
| arm_2L | 3022423..3022949 | 17..543 | 100 | | Minus |
BO08021.pep Sequence
Translation from 16 to 1141
> BO08021.pep
MLLWLPIAVARRMFIILVLMVIGGLFYIYTSENKYHSCFMEGQVLATQQA
LTADGETNLLGDVLQADPKPSPGNSIFFHETSCRLSENRQLETLKVTARQ
ACAIESAAMHNPNFQVFVLFAGPTYRISNNKSHPQPLLEAILSYSNVHLR
RLNLESYASGTPMEEWLKDGRLSRSKYLFSHISDFLRYLTLYRYGGLYLD
MDVVVLRNMEKVPPNYTGAESNTHLAAGVMNLAATGFGHEIAASCLRDFQ
HNFNGGDWGNNGPGVITRVAQKICGTKDIALMREDPKRCMGFKVFGRGAF
YAVPWKQWRDFFEPENLEETIARCKDSYVVHVWNKHSSKLPIKIGSKNAY
ALYAEQNCPRSYKAAGEYFASFLDH
BO08021.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha4GT1-PA | 369 | CG17223-PA | 1..369 | 1..369 | 1966 | 100 | Plus |
| alpha4GT2-PB | 395 | CG5878-PB | 93..395 | 62..369 | 886 | 53.9 | Plus |
