Clone Sequence Records
BO08022.3prime Sequence
880 bp (837 high quality bases) assembled on 2006-01-06
> BO08022.3prime
ATGGTCTAGAAAGCTTGCCTCAATGTCGTGGAAACGGAGGATGGCGCGTC
CGGGTATCTCGGAGTTGCACAGCTTGGCGATGACCTCGGCCGCCTGCTCG
CAGGGGAAGACGGAGTGCGGCGGCGGCTCGATCTTCTTGTTGGCTACCAG
CTCCACCAGCTCAGCCAGCTGCTCGGCGGTGCCGTTCGAGATGGCGATGA
TCTCCTGCTGGTACTGCTCCGACAGGCGCGAGAACTTGGGCAGCAGCTTC
TCGGCCACCTCGTCGCTGATCAGCACAACGCCGCCCTTCGACAAGCAGTG
CATCGAGCGGTGCAGACTCCTGGAGGTTGTGCCAAAGTCAATGACCACGT
CCACGGCTCCGCCGCACACGTCCTTGGTGCGCTCGATCAGCTGCGGCTCG
TACAGGCATTCGTTCCACTGGACCACGCTGACATTTTTGATTTCTGTGGC
CAGGCGGAAGCCCTCGTCCCGCAGACTGGCCACTGTGATGTCCACGTTGT
CGGCTCCAGTTGTGGCAAAGTGATAGGAGGCGATGCGCACGGCCCAGAGT
GCCAGGCCGCCAGTGCCCACGATGAGGATCTTGGGCTTCCGCTTCGGCTC
CGTGGCAGCCCGCTGGCTGAGAATCTGTGTGACAACGGCCTGAGCCTTGA
AGACGGCATTCCAGGCGAGCAGGGCGCCCGTCGGCAGCATGGCGGCCACC
TCCATGGGCAGACTGTCGGGAATGGGCACCACGTGCTTCAGGTCCGGCAC
GACCAGCAGCTCGGCATAGCCGGCTGGGGTCTCATCGAACGGATAGACGA
TCACGCGCTGTCCAATGCGCAGGCCACGGTTGTTGGCCTCGGTGATCTCC
GAGCCCAGGGACTCGATGACGCGGGCCACC
BO08022.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1600-PA | 1146 | CG1600-RA | 282..1143 | 880..19 | 4285 | 99.8 | Minus |
| CG1600-PC | 1305 | CG1600-RC | 441..1302 | 880..19 | 4285 | 99.8 | Minus |
| CG1600-PB | 1146 | CG1600-RB | 282..1143 | 880..19 | 4285 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:39:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drat-RD | 2102 | CG1600-RD | 701..1562 | 880..19 | 4295 | 99.9 | Minus |
| Drat-RB | 1892 | CG1600-RB | 491..1352 | 880..19 | 4295 | 99.9 | Minus |
| Drat-RC | 1938 | CG1600-RC | 654..1515 | 880..19 | 4295 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:39:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7527140..7527586 | 434..880 | 2220 | 99.8 | Plus |
| 2R | 25286936 | 2R | 7526658..7527072 | 19..433 | 2075 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:39:16 has no hits.
BO08022.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:35:30 Download gff for
BO08022.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1600-PA | 282..1146 | 18..880 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:24:48 Download gff for
BO08022.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1600-PB | 282..1146 | 18..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:05:56 Download gff for
BO08022.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drat-RC | 654..1520 | 13..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:55:08 Download gff for
BO08022.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drat-RC | 654..1520 | 13..880 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:55:08 Download gff for
BO08022.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7526653..7527072 | 13..433 | 99 | <- | Plus |
| 2R | 7527140..7527586 | 434..880 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:05:56 Download gff for
BO08022.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3414158..3414577 | 13..433 | 99 | <- | Plus |
| arm_2R | 3414645..3415091 | 434..880 | 99 | | Plus |
BO08022.5prime Sequence
913 bp (769 high quality bases) assembled on 2006-01-06
> BO08022.5prime
GACGAAGTTATCAGTCGACATGCCGGTCGATATATGCAGTCAACCGCACA
ATTTGCTCAGTTCAATGAGTGGAACAACAGATACCTCGTTGTCGCTGAAC
TCATTGTCCCTGACTTCCGTTCTGCCGCCAACGGATCCCGATCACCATAA
TCCACACAGTACACACAGTACGCACAACATGAACAAGCTGTGCCGCCAAG
TGTCAATTGAGTCGCCCGGTCCGGGCGCCAAGAACTGCGTCTTCAACTTC
TTCGTGCCCATCGAGGACACGCCGGCGTTGGGCGCCCGCATCCGGATCGT
TTGCGCCGGAGCCTGCTATCGTCGTCGCGATCGCGCCAACTCCATCACCA
GCATGTCCTCAGTGTCCTCGGAGCTGAGCGACTACTGTCCGTCGGTGAAC
TCGATGTCCTCGCCCGCACACCAGGGCATCCGGGAGGGCTCCTTCTTTCC
CGGCTTCGAGGTGGCCGGCGTCATCGAGTCCCTGGGCTCGGAGATCACCG
AGGCCAACAACCGTGGCCTGCGCATTGGACAGCGCGTGATCGTCTATCCG
TTCGATGAGACCCCAGCCGGCTATGCCGAGCTGCTGGTCGTGCCGGACCT
GAAGCACGTGGTGCCCATTCCCGACAGTCTGCCCATGGAGGTGGCCGCCA
TGCTGCCGACGGGCGCCCTGCTCGCCTGGAATGCCGTCTTCAAGGCTCAG
GCCGTTGTCACACAGATTCTCAGCCAGCGGGCTGCCACGGAGCCGAAGCG
GAAGCCCAAGATCCTCATCGTGGGCACTGGCGGCCTGGCACTCTGGGCCG
TGCGCATCGCCTCCTATCACTTTGCCACAACTGGAGCCGACAACGTGGAC
ATCACAGTGGCCAGTCTGCGGGACGAGGGCTTCCGCCTGGNCACAGAAAT
CAAAAATGTCAGC
BO08022.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1600-PC | 1305 | CG1600-RC | 1..894 | 20..913 | 4451 | 99.8 | Plus |
| CG1600-PA | 1146 | CG1600-RA | 1..735 | 179..913 | 3656 | 99.8 | Plus |
| CG1600-PB | 1146 | CG1600-RB | 1..735 | 179..913 | 3656 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:09:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drat-RC | 1938 | CG1600-RC | 214..1107 | 20..913 | 4459 | 99.9 | Plus |
| Drat-RA | 2021 | CG1600-RA | 228..1073 | 68..913 | 4219 | 99.9 | Plus |
| Drat-RD | 2102 | CG1600-RD | 311..1154 | 70..913 | 4209 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:09:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7527140..7527978 | 906..68 | 4184 | 99.9 | Minus |
| 2R | 25286936 | 2R | 7529028..7529077 | 69..20 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:09:20 has no hits.
BO08022.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:35:31 Download gff for
BO08022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1600-PC | 1..894 | 20..913 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:24:49 Download gff for
BO08022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1600-PC | 1..894 | 20..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:47:13 Download gff for
BO08022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drat-RC | 207..1107 | 12..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:09:06 Download gff for
BO08022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drat-RC | 207..1107 | 12..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:09:06 Download gff for
BO08022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7527134..7527976 | 70..913 | 99 | <- | Minus |
| 2R | 7529028..7529084 | 12..69 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:47:13 Download gff for
BO08022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3414639..3415481 | 70..913 | 99 | <- | Minus |
| arm_2R | 3416533..3416589 | 12..69 | 94 | | Minus |
BO08022.complete Sequence
1336 bp assembled on 2007-03-23
GenBank Submission: FJ631019
> BO08022.complete
GAAGTTATCAGTCGACATGCCGGTCGATATATGCAGTCAACCGCACAATT
TGCTCAGTTCAATGAGTGGAACAACAGATACCTCGTTGTCGCTGAACTCA
TTGTCCCTGACTTCCGTTCTGCCGCCAACGGATCCCGATCACCATAATCC
ACACAGTACACACAGTACGCACAACATGAACAAGCTGTGCCGCCAAGTGT
CAATTGAGTCGCCCGGTCCGGGCGCCAAGAACTGCGTCTTCAACTTCTTC
GTGCCCATCGAGGACACGCCGGCGTTGGGCGCCCGCATCCGGATCGTTTG
CGCCGGAGCCTGCTATCGTCGTCGCGATCGCGCCAACTCCATCACCAGCA
TGTCCTCAGTGTCCTCGGAGCTGAGCGACTACTGTCCGTCGGTGAACTCG
ATGTCCTCGCCCGCACACCAGGGCATCCGGGAGGGCTCCTTCTTTCCCGG
CTTCGAGGTGGCCGGCGTCATCGAGTCCCTGGGCTCGGAGATCACCGAGG
CCAACAACCGTGGCCTGCGCATTGGACAGCGCGTGATCGTCTATCCGTTC
GATGAGACCCCAGCCGGCTATGCCGAGCTGCTGGTCGTGCCGGACCTGAA
GCACGTGGTGCCCATTCCCGACAGTCTGCCCATGGAGGTGGCCGCCATGC
TGCCGACGGGCGCCCTGCTCGCCTGGAATGCCGTCTTCAAGGCTCAGGCC
GTTGTCACACAGATTCTCAGCCAGCGGGCTGCCACGGAGCCGAAGCGGAA
GCCCAAGATCCTCATCGTGGGCACTGGCGGCCTGGCACTCTGGGCCGTGC
GCATCGCCTCCTATCACTTTGCCACAACTGGAGCCGACAACGTGGACATC
ACAGTGGCCAGTCTGCGGGACGAGGGCTTCCGCCTGGCCACAGAAATCAA
AAATGTCAGCGTGGTCCAGTGGAACGAATGCCTGTACGAGCCGCAGCTGA
TCGAGCGCACCAAGGACGTGTGCGGCGGAGCCGTGGACGTGGTCATTGAC
TTTGGCACAACCTCCAGGAGTCTGCACCGCTCGATGCACTGCTTGTCGAA
GGGCGGCGTTGTGCTGATCAGCGACGAGGTGGCCGAGAAGCTGCTGCCCA
AGTTCTCGCGCCTGTCGGAGCAGTACCAGCAGGAGATCATCGCCATCTCG
AACGGCACCGCCGAGCAGCTGGCTGAGCTGGTGGAGCTGGTAGCCAACAA
GAAGATCGAGCCGCCGCCGCACTCCGTCTTCCCCTGCGAGCAGGCGGCCG
AGGTCATCGCCAAGCTGTGCAACTCCGAGATACCCGGACGCGCCATCCTC
CGTTTCCACGACATTGAGGCAAGCTTTCTAGACCAT
BO08022.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:19:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drat-RC | 1305 | CG1600-PC | 1..1302 | 17..1318 | 6510 | 100 | Plus |
| Drat-RD | 1146 | CG1600-PD | 1..1143 | 176..1318 | 5715 | 100 | Plus |
| Drat-RB | 1146 | CG1600-PB | 1..1143 | 176..1318 | 5715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drat-RC | 1938 | CG1600-RC | 214..1515 | 17..1318 | 6510 | 100 | Plus |
| Drat-RA | 2021 | CG1600-RA | 228..1481 | 65..1318 | 6270 | 100 | Plus |
| Drat-RD | 2102 | CG1600-RD | 311..1562 | 67..1318 | 6260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7527140..7527978 | 903..65 | 4195 | 100 | Minus |
| 2R | 25286936 | 2R | 7526658..7527072 | 1318..904 | 2075 | 100 | Minus |
| 2R | 25286936 | 2R | 7529028..7529077 | 66..17 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:19:31 has no hits.
BO08022.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:32 Download gff for
BO08022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1600-RC | 1..1305 | 17..1319 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:29:45 Download gff for
BO08022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1600-RC | 202..1515 | 9..1324 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:21 Download gff for
BO08022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drat-RC | 214..1515 | 17..1320 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:32 Download gff for
BO08022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1600-RC | 202..1515 | 9..1324 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:55 Download gff for
BO08022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drat-RC | 214..1515 | 17..1320 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:55 Download gff for
BO08022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7526656..7527072 | 904..1320 | 99 | <- | Minus |
| 2R | 7527140..7527976 | 67..903 | 100 | <- | Minus |
| 2R | 7529028..7529077 | 17..66 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:21 Download gff for
BO08022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3414161..3414577 | 904..1320 | 99 | <- | Minus |
| arm_2R | 3414645..3415481 | 67..903 | 100 | <- | Minus |
| arm_2R | 3416533..3416582 | 17..66 | 100 | | Minus |
BO08022.pep Sequence
Translation from 16 to 1336
> BO08022.pep
MPVDICSQPHNLLSSMSGTTDTSLSLNSLSLTSVLPPTDPDHHNPHSTHS
THNMNKLCRQVSIESPGPGAKNCVFNFFVPIEDTPALGARIRIVCAGACY
RRRDRANSITSMSSVSSELSDYCPSVNSMSSPAHQGIREGSFFPGFEVAG
VIESLGSEITEANNRGLRIGQRVIVYPFDETPAGYAELLVVPDLKHVVPI
PDSLPMEVAAMLPTGALLAWNAVFKAQAVVTQILSQRAATEPKRKPKILI
VGTGGLALWAVRIASYHFATTGADNVDITVASLRDEGFRLATEIKNVSVV
QWNECLYEPQLIERTKDVCGGAVDVVIDFGTTSRSLHRSMHCLSKGGVVL
ISDEVAEKLLPKFSRLSEQYQQEIIAISNGTAEQLAELVELVANKKIEPP
PHSVFPCEQAAEVIAKLCNSEIPGRAILRFHDIEASFLDH
BO08022.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:35:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drat-PC | 434 | CG1600-PC | 1..434 | 1..434 | 2235 | 100 | Plus |
| Drat-PD | 381 | CG1600-PD | 1..381 | 54..434 | 1948 | 100 | Plus |
| Drat-PB | 381 | CG1600-PB | 1..381 | 54..434 | 1948 | 100 | Plus |
| Drat-PA | 381 | CG1600-PA | 1..381 | 54..434 | 1948 | 100 | Plus |
