Clone BO08028 Report

Search the DGRC for BO08028

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:80
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCG7082-RA
Protein status:BO08028.pep: validated full length
Sequenced Size:1762

Clone Sequence Records

BO08028.3prime Sequence

928 bp (872 high quality bases) assembled on 2006-01-06

> BO08028.3prime
ATGGTCTAGAAAGCTTGCATGCGCGCTAGCACCATTTGTGGTGCTGGCAT
TATTGTTATTCCCGTTTTCGAGGTCTGTAGCCGTCAGTTTAGCCGGATTA
ATGTTTTTTATGTCGTTTCCGTTCAGTTTATGCTGCAAATGCTGCAGCTG
CTGGGCGAGGTGCTCGTTCTCCGCCTGCGTAATGCTGTCAACATCAATGG
ACATCGACATAGGTGAGTGGGGCGTAAGCGGAGTCACTGGATTGCTGACG
CACAACTCCTCAATGGTGGAGTCGCTGTTACTTGAGGGCGTCGAGGAGCG
TGACCGCACTGGATACGAATCGTCCAGGGGCAGAGCAAAGCCCTGGGTGA
TCATCAGATCGGCAATATTTAGTTCAGAGTTGTCGGCTGGATCGAATAGT
TCCACTCCGGGCAGCGGGGTTCCCTCCTTGGCAGCAGCACTTACAGCGGT
GGTTGCCCGTGGACGCTCCTTGTAGGTCACCACTCGAGCAATCAGCTTTC
TCCAATGTGCCACCTCTGTCAGCTCTTCGAACTTTGCGATTGAAGACTTT
GGCCACGTAATAGGCTCCGTCTGGATGGTAGATTTTACATTGGCCAAGAA
GCATTCAACGGCTTGGAACCTGAGCGTGAGGAAATCAGTGCGCAGCTCGC
AGATATCAGCTGGCGAAATATATTCGCTATCTCCATAGTCCACGAAGTAG
AGATCGATCACCTGCTCCTTTGGATTGTACTGGTTAGGCATAATGTCCAC
GATTTCTGCGCGATACCACTTCTCGTCGAACTTAAACACGGCTGCCACAA
TCTGACCCACATATGGAGCAGTCAGCACGTGCTTGGCCCTGTTTTCAGCA
CTACTATAATAGCTGGTCATCTCCTGNACCATGCTATCGAGCTTCTTTGG
ACTGCGTCCGATNAGCTGAACCCAGAAT

BO08028.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7082-PA 1731 CG7082-RA 850..1728 897..19 4376 99.8 Minus
CG7082-PC 1731 CG7082-RC 850..1728 897..19 4376 99.8 Minus
CG7082-PB 1731 CG7082-RB 850..1728 897..19 4376 99.8 Minus
CG7082-PD 1731 CG7082-RD 850..1728 897..19 4376 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
papi-RD 2112 CG7082-RD 948..1857 928..19 4483 99.6 Minus
papi-RB 2235 CG7082-RB 1019..1928 928..19 4483 99.6 Minus
papi-RC 2331 CG7082-RC 1115..2024 928..19 4483 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2224743..2225237 513..19 2475 100 Minus
2L 23513712 2L 2224218..2224528 928..618 1438 98.7 Minus
2L 23513712 2L 2224577..2224685 621..513 545 100 Minus
Blast to na_te.dros performed on 2015-02-04 20:34:45 has no hits.

BO08028.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:35:43 Download gff for BO08028.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7082-PA 819..1731 18..928 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:25:02 Download gff for BO08028.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7082-PD 819..1731 18..928 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:27:25 Download gff for BO08028.3prime
Subject Subject Range Query Range Percent Splice Strand
papi-RC 1115..2033 9..928 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:51:54 Download gff for BO08028.3prime
Subject Subject Range Query Range Percent Splice Strand
papi-RC 1115..2033 9..928 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:51:54 Download gff for BO08028.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2224218..2224526 620..928 98 -> Minus
2L 2224579..2224685 513..619 100 -> Minus
2L 2224744..2225246 9..512 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:27:25 Download gff for BO08028.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2224218..2224526 620..928 98 -> Minus
arm_2L 2224579..2224685 513..619 100 -> Minus
arm_2L 2224744..2225246 9..512 99   Minus

BO08028.5prime Sequence

888 bp (852 high quality bases) assembled on 2006-01-06

> BO08028.5prime
GAAGTTATCAGTCGACATGTTGCGCAACACGCCTTTCGGTGCCACGCCCA
CCTACAAACTACTTCTGGGCTTCGGACTATGCTCCCTTGGGGGCGCCATG
CTATATGCCTATTTCAAGACTCGAAACGACGAGGAGGAAGCGGACTCAGG
TGGCCAACGGCCGGCATCCGGGATTAGAGGACAGACAGAGGAACAGAAGC
CCCAGAAGGAAGTGTGCCTCAAAATCGTCGTGGACAACGAGCATGTGCCC
CTGATAATGGGTCGCGGTGGATCCAATATCAAGTTGATTGAAGAAAAGAC
CCTGGCCAAGATAAGATTACGAGACAAAGACAGTGGCCACAAATTCTGCG
ACATTAGCGGCGTTCCCGATGCGGTTAAGGCGGCTCGAGCTCTGCTTATC
AAGGAAATTGAACGTGCGCCCGTGGTGAAAGTGGAACTGCAGGTGCCCCA
GAGGCTGGCCAGCAAAATTAACGGACGCGGCGGCGAGCTCCTCCAGGAGA
TCCGGAGCAGTTCGCTAGCCAAGCTGAATATCGATTTAAATGGGCGGAAT
GGAAAGGCCAAGATTACGATTATCGGCAATCAAAAGCAAGTGAACATAGC
CCGAAAAATGCTGGATGATCAGATAGAGGAGGATGAGGAACTCGTGCGGT
CCATGGAGGAGGTGGAACAGCGTCGGGAGCCCCGCAGATCTCCCACCAAC
AGCATTGCGTCCAGCATGTACTCCTCCCAGACATCCCTAAGCTCTCACAC
TCAGCCCAGAGACAAGCTAATGGCCTCCAAGGGCGAGGGTAAGCCAATGG
AGGTTTATGTCTCCGCGGTGGCCTCGCCCACTAAATTCTGGGTTCAGCTT
ATCGGACCGCAGTCCAAGAAGCTCGATAGCATGGTCCA

BO08028.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7082-PA 1731 CG7082-RA 1..872 17..888 4360 100 Plus
CG7082-PC 1731 CG7082-RC 1..872 17..888 4360 100 Plus
CG7082-PB 1731 CG7082-RB 1..872 17..888 4360 100 Plus
CG7082-PD 1731 CG7082-RD 1..872 17..888 4360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:35:53
Subject Length Description Subject Range Query Range Score Percent Strand
papi-RD 2112 CG7082-RD 128..1001 15..888 4370 100 Plus
papi-RB 2235 CG7082-RB 199..1072 15..888 4370 100 Plus
papi-RC 2331 CG7082-RC 295..1168 15..888 4370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2223704..2224271 321..888 2840 100 Plus
2L 23513712 2L 2223327..2223633 15..321 1535 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:35:52 has no hits.

BO08028.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:35:44 Download gff for BO08028.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7082-PA 1..871 17..887 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:25:03 Download gff for BO08028.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7082-PD 1..871 17..887 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:59:25 Download gff for BO08028.5prime
Subject Subject Range Query Range Percent Splice Strand
papi-RC 284..1167 1..887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:10:08 Download gff for BO08028.5prime
Subject Subject Range Query Range Percent Splice Strand
papi-RC 284..1167 1..887 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:10:08 Download gff for BO08028.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2223316..2223633 1..321 98 -> Plus
2L 2223705..2224270 322..887 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:59:25 Download gff for BO08028.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2223316..2223633 1..321 98 -> Plus
arm_2L 2223705..2224270 322..887 100   Plus

BO08028.complete Sequence

1762 bp (1762 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631020

> BO08028.complete
GAAGTTATCAGTCGACATGTTGCGCAACACGCCTTTCGGTGCCACGCCCA
CCTACAAACTACTTCTGGGCTTCGGACTATGCTCCCTTGGGGGCGCCATG
CTATATGCCTATTTCAAGACTCGAAACGACGAGGAGGAAGCGGACTCAGG
TGGCCAACGGCCGGCATCCGGGATTAGAGGACAGACAGAGGAACAGAAGC
CCCAGAAGGAAGTGTGCCTCAAAATCGTCGTGGACAACGAGCATGTGCCC
CTGATAATGGGTCGCGGTGGATCCAATATCAAGTTGATTGAAGAAAAGAC
CCTGGCCAAGATAAGATTACGAGACAAAGACAGTGGCCACAAATTCTGCG
ACATTAGCGGCGTTCCCGATGCGGTTAAGGCGGCTCGAGCTCTGCTTATC
AAGGAAATTGAACGTGCGCCCGTGGTGAAAGTGGAACTGCAGGTGCCCCA
GAGGCTGGCCAGCAAAATTAACGGACGCGGCGGCGAGCTCCTCCAGGAGA
TCCGGAGCAGTTCGCTAGCCAAGCTGAATATCGATTTAAATGGGCGGAAT
GGAAAGGCCAAGATTACGATTATCGGCAATCAAAAGCAAGTGAACATAGC
CCGAAAAATGCTGGATGATCAGATAGAGGAGGATGAGGAACTCGTGCGGT
CCATGGAGGAGGTGGAACAGCGTCGGGAGCCCCGCAGATCTCCCACCAAC
AGCATTGCGTCCAGCATGTACTCCTCCCAGACATCCCTAAGCTCTCACAC
TCAGCCCAGAGACAAGCTAATGGCCTCCAAGGGCGAGGGTAAGCCAATGG
AGGTTTATGTCTCCGCGGTGGCCTCGCCCACTAAATTCTGGGTTCAGCTT
ATCGGACCGCAGTCCAAGAAGCTCGATAGCATGGTCCAGGAGATGACCAG
CTATTATAGTAGTGCTGAAAACAGGGCCAAGCACGTGCTGACTGCTCCAT
ATGTGGGTCAGATTGTGGCAGCCGTGTTTAAGTTCGACGAGAAGTGGTAT
CGCGCAGAAATCGTGGACATTATGCCTAACCAGTACAATCCAAAGGAGCA
GGTGATCGATCTCTACTTCGTGGACTATGGAGATAGCGAATATATTTCGC
CAGCTGATATCTGCGAGCTGCGCACTGATTTCCTCACGCTCAGGTTCCAA
GCCGTTGAATGCTTCTTGGCCAATGTAAAATCTACCATCCAGACGGAGCC
TATTACGTGGCCAAAGTCTTCAATCGCAAAGTTCGAAGAGCTGACAGAGG
TGGCACATTGGAGAAAGCTGATTGCTCGAGTGGTGACCTACAAGGAGCGT
CCACGGGCAACCACCGCTGTAAGTGCTGCTGCCAAGGAGGGAACCCCGCT
GCCCGGAGTGGAACTATTCGATCCAGCCGACAACTCTGAACTAAATATTG
CCGATCTGATGATCACCCAGGGCTTTGCTCTGCCCCTGGACGATTCGTAT
CCAGTGCGGTCACGCTCCTCGACGCCCTCAAGTAACAGCGACTCCACCAT
TGAGGAGTTGTGCGTCAGCAATCCAGTGACTCCGCTTACGCCCCACTCAC
CTATGTCGATGTCCATTGATGTTGACAGCATTACGCAGGCGGAGAACGAG
CACCTCGCCCAGCAGCTGCAGCATTTGCAGCATAAACTGAACGGAAACGA
CATAAAAAACATTAATCCGGCTAAACTGACGGCTACAGACCTCGAAAACG
GGAATAACAATAATGCCAGCACCACAAATGGTGCTAGCGCGCATGCAAGC
TTTCTAGACCAT

BO08028.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:44:09
Subject Length Description Subject Range Query Range Score Percent Strand
papi-RD 1731 CG7082-PD 1..1728 17..1744 8640 100 Plus
papi-RB 1731 CG7082-PB 1..1728 17..1744 8640 100 Plus
papi-RC 1731 CG7082-PC 1..1728 17..1744 8640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
papi-RD 2112 CG7082-RD 128..1857 15..1744 8650 100 Plus
papi-RB 2235 CG7082-RB 199..1928 15..1744 8650 100 Plus
papi-RC 2331 CG7082-RC 295..2024 15..1744 8650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:44:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2223704..2224528 321..1145 4125 100 Plus
2L 23513712 2L 2224743..2225237 1250..1744 2475 100 Plus
2L 23513712 2L 2223327..2223633 15..321 1535 100 Plus
2L 23513712 2L 2224577..2224685 1142..1250 545 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:44:07 has no hits.

BO08028.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:33 Download gff for BO08028.complete
Subject Subject Range Query Range Percent Splice Strand
CG7082-RB 1..1731 17..1745 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:09 Download gff for BO08028.complete
Subject Subject Range Query Range Percent Splice Strand
CG7082-RB 188..1937 1..1754 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:33 Download gff for BO08028.complete
Subject Subject Range Query Range Percent Splice Strand
papi-RC 302..2024 22..1746 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:33 Download gff for BO08028.complete
Subject Subject Range Query Range Percent Splice Strand
CG7082-RB 188..1937 1..1754 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:44 Download gff for BO08028.complete
Subject Subject Range Query Range Percent Splice Strand
papi-RC 302..2024 22..1746 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:44 Download gff for BO08028.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2223334..2223633 22..321 100 -> Plus
2L 2223705..2224526 322..1143 100 -> Plus
2L 2224579..2224685 1144..1250 100 -> Plus
2L 2224744..2225237 1251..1746 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:33 Download gff for BO08028.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2223334..2223633 22..321 100 -> Plus
arm_2L 2223705..2224526 322..1143 100 -> Plus
arm_2L 2224579..2224685 1144..1250 100 -> Plus
arm_2L 2224744..2225237 1251..1746 99   Plus

BO08028.pep Sequence

Translation from 16 to 1762

> BO08028.pep
MLRNTPFGATPTYKLLLGFGLCSLGGAMLYAYFKTRNDEEEADSGGQRPA
SGIRGQTEEQKPQKEVCLKIVVDNEHVPLIMGRGGSNIKLIEEKTLAKIR
LRDKDSGHKFCDISGVPDAVKAARALLIKEIERAPVVKVELQVPQRLASK
INGRGGELLQEIRSSSLAKLNIDLNGRNGKAKITIIGNQKQVNIARKMLD
DQIEEDEELVRSMEEVEQRREPRRSPTNSIASSMYSSQTSLSSHTQPRDK
LMASKGEGKPMEVYVSAVASPTKFWVQLIGPQSKKLDSMVQEMTSYYSSA
ENRAKHVLTAPYVGQIVAAVFKFDEKWYRAEIVDIMPNQYNPKEQVIDLY
FVDYGDSEYISPADICELRTDFLTLRFQAVECFLANVKSTIQTEPITWPK
SSIAKFEELTEVAHWRKLIARVVTYKERPRATTAVSAAAKEGTPLPGVEL
FDPADNSELNIADLMITQGFALPLDDSYPVRSRSSTPSSNSDSTIEELCV
SNPVTPLTPHSPMSMSIDVDSITQAENEHLAQQLQHLQHKLNGNDIKNIN
PAKLTATDLENGNNNNASTTNGASAHASFLDH

BO08028.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
papi-PD 576 CG7082-PD 1..576 1..576 2940 100 Plus
papi-PB 576 CG7082-PB 1..576 1..576 2940 100 Plus
papi-PC 576 CG7082-PC 1..576 1..576 2940 100 Plus
papi-PA 576 CG7082-PA 1..576 1..576 2940 100 Plus
spoon-PA 585 CG3249-PA 291..546 140..425 185 25.8 Plus