Clone Sequence Records
BO08028.3prime Sequence
928 bp (872 high quality bases) assembled on 2006-01-06
> BO08028.3prime
ATGGTCTAGAAAGCTTGCATGCGCGCTAGCACCATTTGTGGTGCTGGCAT
TATTGTTATTCCCGTTTTCGAGGTCTGTAGCCGTCAGTTTAGCCGGATTA
ATGTTTTTTATGTCGTTTCCGTTCAGTTTATGCTGCAAATGCTGCAGCTG
CTGGGCGAGGTGCTCGTTCTCCGCCTGCGTAATGCTGTCAACATCAATGG
ACATCGACATAGGTGAGTGGGGCGTAAGCGGAGTCACTGGATTGCTGACG
CACAACTCCTCAATGGTGGAGTCGCTGTTACTTGAGGGCGTCGAGGAGCG
TGACCGCACTGGATACGAATCGTCCAGGGGCAGAGCAAAGCCCTGGGTGA
TCATCAGATCGGCAATATTTAGTTCAGAGTTGTCGGCTGGATCGAATAGT
TCCACTCCGGGCAGCGGGGTTCCCTCCTTGGCAGCAGCACTTACAGCGGT
GGTTGCCCGTGGACGCTCCTTGTAGGTCACCACTCGAGCAATCAGCTTTC
TCCAATGTGCCACCTCTGTCAGCTCTTCGAACTTTGCGATTGAAGACTTT
GGCCACGTAATAGGCTCCGTCTGGATGGTAGATTTTACATTGGCCAAGAA
GCATTCAACGGCTTGGAACCTGAGCGTGAGGAAATCAGTGCGCAGCTCGC
AGATATCAGCTGGCGAAATATATTCGCTATCTCCATAGTCCACGAAGTAG
AGATCGATCACCTGCTCCTTTGGATTGTACTGGTTAGGCATAATGTCCAC
GATTTCTGCGCGATACCACTTCTCGTCGAACTTAAACACGGCTGCCACAA
TCTGACCCACATATGGAGCAGTCAGCACGTGCTTGGCCCTGTTTTCAGCA
CTACTATAATAGCTGGTCATCTCCTGNACCATGCTATCGAGCTTCTTTGG
ACTGCGTCCGATNAGCTGAACCCAGAAT
BO08028.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7082-PA | 1731 | CG7082-RA | 850..1728 | 897..19 | 4376 | 99.8 | Minus |
CG7082-PC | 1731 | CG7082-RC | 850..1728 | 897..19 | 4376 | 99.8 | Minus |
CG7082-PB | 1731 | CG7082-RB | 850..1728 | 897..19 | 4376 | 99.8 | Minus |
CG7082-PD | 1731 | CG7082-RD | 850..1728 | 897..19 | 4376 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:34:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
papi-RD | 2112 | CG7082-RD | 948..1857 | 928..19 | 4483 | 99.6 | Minus |
papi-RB | 2235 | CG7082-RB | 1019..1928 | 928..19 | 4483 | 99.6 | Minus |
papi-RC | 2331 | CG7082-RC | 1115..2024 | 928..19 | 4483 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:34:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2224743..2225237 | 513..19 | 2475 | 100 | Minus |
2L | 23513712 | 2L | 2224218..2224528 | 928..618 | 1438 | 98.7 | Minus |
2L | 23513712 | 2L | 2224577..2224685 | 621..513 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 20:34:45 has no hits.
BO08028.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:35:43 Download gff for
BO08028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7082-PA | 819..1731 | 18..928 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:25:02 Download gff for
BO08028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7082-PD | 819..1731 | 18..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:27:25 Download gff for
BO08028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
papi-RC | 1115..2033 | 9..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:51:54 Download gff for
BO08028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
papi-RC | 1115..2033 | 9..928 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:51:54 Download gff for
BO08028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2224218..2224526 | 620..928 | 98 | -> | Minus |
2L | 2224579..2224685 | 513..619 | 100 | -> | Minus |
2L | 2224744..2225246 | 9..512 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:27:25 Download gff for
BO08028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2224218..2224526 | 620..928 | 98 | -> | Minus |
arm_2L | 2224579..2224685 | 513..619 | 100 | -> | Minus |
arm_2L | 2224744..2225246 | 9..512 | 99 | | Minus |
BO08028.5prime Sequence
888 bp (852 high quality bases) assembled on 2006-01-06
> BO08028.5prime
GAAGTTATCAGTCGACATGTTGCGCAACACGCCTTTCGGTGCCACGCCCA
CCTACAAACTACTTCTGGGCTTCGGACTATGCTCCCTTGGGGGCGCCATG
CTATATGCCTATTTCAAGACTCGAAACGACGAGGAGGAAGCGGACTCAGG
TGGCCAACGGCCGGCATCCGGGATTAGAGGACAGACAGAGGAACAGAAGC
CCCAGAAGGAAGTGTGCCTCAAAATCGTCGTGGACAACGAGCATGTGCCC
CTGATAATGGGTCGCGGTGGATCCAATATCAAGTTGATTGAAGAAAAGAC
CCTGGCCAAGATAAGATTACGAGACAAAGACAGTGGCCACAAATTCTGCG
ACATTAGCGGCGTTCCCGATGCGGTTAAGGCGGCTCGAGCTCTGCTTATC
AAGGAAATTGAACGTGCGCCCGTGGTGAAAGTGGAACTGCAGGTGCCCCA
GAGGCTGGCCAGCAAAATTAACGGACGCGGCGGCGAGCTCCTCCAGGAGA
TCCGGAGCAGTTCGCTAGCCAAGCTGAATATCGATTTAAATGGGCGGAAT
GGAAAGGCCAAGATTACGATTATCGGCAATCAAAAGCAAGTGAACATAGC
CCGAAAAATGCTGGATGATCAGATAGAGGAGGATGAGGAACTCGTGCGGT
CCATGGAGGAGGTGGAACAGCGTCGGGAGCCCCGCAGATCTCCCACCAAC
AGCATTGCGTCCAGCATGTACTCCTCCCAGACATCCCTAAGCTCTCACAC
TCAGCCCAGAGACAAGCTAATGGCCTCCAAGGGCGAGGGTAAGCCAATGG
AGGTTTATGTCTCCGCGGTGGCCTCGCCCACTAAATTCTGGGTTCAGCTT
ATCGGACCGCAGTCCAAGAAGCTCGATAGCATGGTCCA
BO08028.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7082-PA | 1731 | CG7082-RA | 1..872 | 17..888 | 4360 | 100 | Plus |
CG7082-PC | 1731 | CG7082-RC | 1..872 | 17..888 | 4360 | 100 | Plus |
CG7082-PB | 1731 | CG7082-RB | 1..872 | 17..888 | 4360 | 100 | Plus |
CG7082-PD | 1731 | CG7082-RD | 1..872 | 17..888 | 4360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:35:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
papi-RD | 2112 | CG7082-RD | 128..1001 | 15..888 | 4370 | 100 | Plus |
papi-RB | 2235 | CG7082-RB | 199..1072 | 15..888 | 4370 | 100 | Plus |
papi-RC | 2331 | CG7082-RC | 295..1168 | 15..888 | 4370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:35:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2223704..2224271 | 321..888 | 2840 | 100 | Plus |
2L | 23513712 | 2L | 2223327..2223633 | 15..321 | 1535 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:35:52 has no hits.
BO08028.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:35:44 Download gff for
BO08028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7082-PA | 1..871 | 17..887 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:25:03 Download gff for
BO08028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7082-PD | 1..871 | 17..887 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:59:25 Download gff for
BO08028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
papi-RC | 284..1167 | 1..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:10:08 Download gff for
BO08028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
papi-RC | 284..1167 | 1..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:10:08 Download gff for
BO08028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2223316..2223633 | 1..321 | 98 | -> | Plus |
2L | 2223705..2224270 | 322..887 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:59:25 Download gff for
BO08028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2223316..2223633 | 1..321 | 98 | -> | Plus |
arm_2L | 2223705..2224270 | 322..887 | 100 | | Plus |
BO08028.complete Sequence
1762 bp (1762 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631020
> BO08028.complete
GAAGTTATCAGTCGACATGTTGCGCAACACGCCTTTCGGTGCCACGCCCA
CCTACAAACTACTTCTGGGCTTCGGACTATGCTCCCTTGGGGGCGCCATG
CTATATGCCTATTTCAAGACTCGAAACGACGAGGAGGAAGCGGACTCAGG
TGGCCAACGGCCGGCATCCGGGATTAGAGGACAGACAGAGGAACAGAAGC
CCCAGAAGGAAGTGTGCCTCAAAATCGTCGTGGACAACGAGCATGTGCCC
CTGATAATGGGTCGCGGTGGATCCAATATCAAGTTGATTGAAGAAAAGAC
CCTGGCCAAGATAAGATTACGAGACAAAGACAGTGGCCACAAATTCTGCG
ACATTAGCGGCGTTCCCGATGCGGTTAAGGCGGCTCGAGCTCTGCTTATC
AAGGAAATTGAACGTGCGCCCGTGGTGAAAGTGGAACTGCAGGTGCCCCA
GAGGCTGGCCAGCAAAATTAACGGACGCGGCGGCGAGCTCCTCCAGGAGA
TCCGGAGCAGTTCGCTAGCCAAGCTGAATATCGATTTAAATGGGCGGAAT
GGAAAGGCCAAGATTACGATTATCGGCAATCAAAAGCAAGTGAACATAGC
CCGAAAAATGCTGGATGATCAGATAGAGGAGGATGAGGAACTCGTGCGGT
CCATGGAGGAGGTGGAACAGCGTCGGGAGCCCCGCAGATCTCCCACCAAC
AGCATTGCGTCCAGCATGTACTCCTCCCAGACATCCCTAAGCTCTCACAC
TCAGCCCAGAGACAAGCTAATGGCCTCCAAGGGCGAGGGTAAGCCAATGG
AGGTTTATGTCTCCGCGGTGGCCTCGCCCACTAAATTCTGGGTTCAGCTT
ATCGGACCGCAGTCCAAGAAGCTCGATAGCATGGTCCAGGAGATGACCAG
CTATTATAGTAGTGCTGAAAACAGGGCCAAGCACGTGCTGACTGCTCCAT
ATGTGGGTCAGATTGTGGCAGCCGTGTTTAAGTTCGACGAGAAGTGGTAT
CGCGCAGAAATCGTGGACATTATGCCTAACCAGTACAATCCAAAGGAGCA
GGTGATCGATCTCTACTTCGTGGACTATGGAGATAGCGAATATATTTCGC
CAGCTGATATCTGCGAGCTGCGCACTGATTTCCTCACGCTCAGGTTCCAA
GCCGTTGAATGCTTCTTGGCCAATGTAAAATCTACCATCCAGACGGAGCC
TATTACGTGGCCAAAGTCTTCAATCGCAAAGTTCGAAGAGCTGACAGAGG
TGGCACATTGGAGAAAGCTGATTGCTCGAGTGGTGACCTACAAGGAGCGT
CCACGGGCAACCACCGCTGTAAGTGCTGCTGCCAAGGAGGGAACCCCGCT
GCCCGGAGTGGAACTATTCGATCCAGCCGACAACTCTGAACTAAATATTG
CCGATCTGATGATCACCCAGGGCTTTGCTCTGCCCCTGGACGATTCGTAT
CCAGTGCGGTCACGCTCCTCGACGCCCTCAAGTAACAGCGACTCCACCAT
TGAGGAGTTGTGCGTCAGCAATCCAGTGACTCCGCTTACGCCCCACTCAC
CTATGTCGATGTCCATTGATGTTGACAGCATTACGCAGGCGGAGAACGAG
CACCTCGCCCAGCAGCTGCAGCATTTGCAGCATAAACTGAACGGAAACGA
CATAAAAAACATTAATCCGGCTAAACTGACGGCTACAGACCTCGAAAACG
GGAATAACAATAATGCCAGCACCACAAATGGTGCTAGCGCGCATGCAAGC
TTTCTAGACCAT
BO08028.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:44:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
papi-RD | 1731 | CG7082-PD | 1..1728 | 17..1744 | 8640 | 100 | Plus |
papi-RB | 1731 | CG7082-PB | 1..1728 | 17..1744 | 8640 | 100 | Plus |
papi-RC | 1731 | CG7082-PC | 1..1728 | 17..1744 | 8640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:44:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
papi-RD | 2112 | CG7082-RD | 128..1857 | 15..1744 | 8650 | 100 | Plus |
papi-RB | 2235 | CG7082-RB | 199..1928 | 15..1744 | 8650 | 100 | Plus |
papi-RC | 2331 | CG7082-RC | 295..2024 | 15..1744 | 8650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:44:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2223704..2224528 | 321..1145 | 4125 | 100 | Plus |
2L | 23513712 | 2L | 2224743..2225237 | 1250..1744 | 2475 | 100 | Plus |
2L | 23513712 | 2L | 2223327..2223633 | 15..321 | 1535 | 100 | Plus |
2L | 23513712 | 2L | 2224577..2224685 | 1142..1250 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:44:07 has no hits.
BO08028.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:33 Download gff for
BO08028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7082-RB | 1..1731 | 17..1745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:09 Download gff for
BO08028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7082-RB | 188..1937 | 1..1754 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:33 Download gff for
BO08028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
papi-RC | 302..2024 | 22..1746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:33 Download gff for
BO08028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7082-RB | 188..1937 | 1..1754 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:44 Download gff for
BO08028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
papi-RC | 302..2024 | 22..1746 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:44 Download gff for
BO08028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2223334..2223633 | 22..321 | 100 | -> | Plus |
2L | 2223705..2224526 | 322..1143 | 100 | -> | Plus |
2L | 2224579..2224685 | 1144..1250 | 100 | -> | Plus |
2L | 2224744..2225237 | 1251..1746 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:33 Download gff for
BO08028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2223334..2223633 | 22..321 | 100 | -> | Plus |
arm_2L | 2223705..2224526 | 322..1143 | 100 | -> | Plus |
arm_2L | 2224579..2224685 | 1144..1250 | 100 | -> | Plus |
arm_2L | 2224744..2225237 | 1251..1746 | 99 | | Plus |
BO08028.pep Sequence
Translation from 16 to 1762
> BO08028.pep
MLRNTPFGATPTYKLLLGFGLCSLGGAMLYAYFKTRNDEEEADSGGQRPA
SGIRGQTEEQKPQKEVCLKIVVDNEHVPLIMGRGGSNIKLIEEKTLAKIR
LRDKDSGHKFCDISGVPDAVKAARALLIKEIERAPVVKVELQVPQRLASK
INGRGGELLQEIRSSSLAKLNIDLNGRNGKAKITIIGNQKQVNIARKMLD
DQIEEDEELVRSMEEVEQRREPRRSPTNSIASSMYSSQTSLSSHTQPRDK
LMASKGEGKPMEVYVSAVASPTKFWVQLIGPQSKKLDSMVQEMTSYYSSA
ENRAKHVLTAPYVGQIVAAVFKFDEKWYRAEIVDIMPNQYNPKEQVIDLY
FVDYGDSEYISPADICELRTDFLTLRFQAVECFLANVKSTIQTEPITWPK
SSIAKFEELTEVAHWRKLIARVVTYKERPRATTAVSAAAKEGTPLPGVEL
FDPADNSELNIADLMITQGFALPLDDSYPVRSRSSTPSSNSDSTIEELCV
SNPVTPLTPHSPMSMSIDVDSITQAENEHLAQQLQHLQHKLNGNDIKNIN
PAKLTATDLENGNNNNASTTNGASAHASFLDH
BO08028.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:37:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
papi-PD | 576 | CG7082-PD | 1..576 | 1..576 | 2940 | 100 | Plus |
papi-PB | 576 | CG7082-PB | 1..576 | 1..576 | 2940 | 100 | Plus |
papi-PC | 576 | CG7082-PC | 1..576 | 1..576 | 2940 | 100 | Plus |
papi-PA | 576 | CG7082-PA | 1..576 | 1..576 | 2940 | 100 | Plus |
spoon-PA | 585 | CG3249-PA | 291..546 | 140..425 | 185 | 25.8 | Plus |