Clone Sequence Records
BO08029.3prime Sequence
962 bp (764 high quality bases) assembled on 2006-01-06
> BO08029.3prime
ATGGTCTAGAAAGCTTGCGGCGAAACTTACGTCATCCGTCTTGTAGTAAA
GGTAGTTCCAGTACCAAAAGTTTTTATCCGCCTTGGCTGGGATCAAGTGA
TGCTCCGGTATGAAGGGAAACATGCGACCGCGACCGATTTCGTCCCTGGA
ATCGCCGGCGGTGACGTTCAGGTTCTCCATGCATCGCCCGATTTCGATGT
CCTCGTTGACCACCGTGCCCGGCAGGCACATCTTGGGATTCGGAATGCCC
TCGACCACGAAGCGACGCAGGGCCTCCCGACTGAGTATGTAGCCCGCTCC
GCCGGACATGTAGCCCTGCTTCACGAAGGGCTTGAACTTGAATCCGAAGT
GCACGGGTGTTTCGGGATTGTACGGATAGAGCATATACCGCATGTTCTCG
ATCACGGCGTAAGTGTCGTCATCGGCCTTGTAGAAGAAGTCGGCGTCGTT
ATAGTGGTGATGATAGACGTACTTGAACGCCTCCTTGACCTTGGCCCATA
GATTCTCCCGTCCCTCGCCCACGTCGAGCTTCACGGTGGGCAGCTCCTCA
TCCGCGCCGGAACTCATGAAGAGCAAGATGTTGCAGCGCTTGCCCCAGGT
TCGCTTCACATGGCGAGCCTTCTTCTTGTGGTTTGTGGGATTGGTCATCA
CCCAGCAGAGGATGCGTACCTCCTTCTTCAACTGCTCGGCCACGCTGACG
TTGTCGTTGCGATGATCATGCTTCAACCCGCTCTGCTCCGGAGCCAATTG
ACCACCGGTGGCCACCTGGGAATCGCTGAACCGTCTGCTGAGATACGGAT
AGAGACTCTCGTGCGGCGCAATGCTGGAGAAGATTTGAGCCAGGCAGTAG
CCGACCACCAAACCCAGCATCAAGGTAAACACCGAGCGATTCTTAGAACG
CGAAGCTTCTGTTAGCAGGGAACGCGACAATAGACTTGCACTCGTCATGT
CGACTGATAACT
BO08029.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8708-PA | 933 | CG8708-RA | 85..930 | 864..19 | 4230 | 100 | Minus |
CG8708-PB | 1353 | CG8708-RB | 85..919 | 864..30 | 4175 | 100 | Minus |
CG8708-PA | 933 | CG8708-RA | 1..80 | 948..869 | 375 | 98.7 | Minus |
CG8708-PB | 1353 | CG8708-RB | 1..80 | 948..869 | 375 | 98.7 | Minus |
CG9520-PB | 1167 | CG9520-RB | 624..713 | 340..251 | 150 | 86.6 | Minus |
CG9520-PC | 1167 | CG9520-RC | 624..713 | 340..251 | 150 | 86.6 | Minus |
CG9520-PA | 1167 | CG9520-RA | 624..713 | 340..251 | 150 | 86.6 | Minus |
CG9520-PB | 1167 | CG9520-RB | 338..385 | 626..579 | 140 | 91.6 | Minus |
CG9520-PC | 1167 | CG9520-RC | 338..385 | 626..579 | 140 | 91.6 | Minus |
CG9520-PA | 1167 | CG9520-RA | 338..385 | 626..579 | 140 | 91.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:33:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8708-RD | 1862 | CG8708-RD | 349..1267 | 948..30 | 4535 | 99.7 | Minus |
CG8708-RB | 1674 | CG8708-RB | 161..1079 | 948..30 | 4535 | 99.7 | Minus |
CG8708-RC | 1626 | CG8708-RC | 155..1031 | 906..30 | 4325 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:33:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8160043..8160931 | 19..907 | 4370 | 99.4 | Plus |
2L | 23513712 | 2L | 8944428..8944862 | 226..660 | 705 | 77.5 | Plus |
2R | 25286936 | 2R | 8161033..8161075 | 906..948 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:33:41 has no hits.
BO08029.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:35:45 Download gff for
BO08029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8708-PA | 1..933 | 16..948 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:25:05 Download gff for
BO08029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8708-PA | 1..933 | 16..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:13:41 Download gff for
BO08029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8708-RB | 150..1085 | 21..958 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 19:18:49 Download gff for
BO08029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8708-RB | 150..1085 | 21..958 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:18:49 Download gff for
BO08029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8160043..8160929 | 19..905 | 99 | <- | Plus |
2R | 8161033..8161086 | 906..958 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:13:41 Download gff for
BO08029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4047548..4048434 | 19..905 | 99 | <- | Plus |
arm_2R | 4048538..4048591 | 906..958 | 92 | | Plus |
BO08029.5prime Sequence
920 bp (821 high quality bases) assembled on 2006-01-06
> BO08029.5prime
GAAGTTATCAGTCGACATGACGAGTGCAAGTCTATTGTCGCGTTCCCTGC
TAACAGAAGCTCCGCGTTCTAAGAATCGCTCGGTGTTTACCTTGATTGCT
GGTTTGGTGGTCGGCTACTGCCTGGCTCAAATCTTCTCCAGCATTGCGCC
GCACGAGAGTCTCTATCCGTATCTCAGCAGACGGTTCAGCGATTCCCAGG
TGGCCACCGGTGGTCAATTGGCTCCGGAGCAGAGCGGGTTGAAGCATGAT
CATCGCAACGACAACGTCAGCGTGGCCGAGCAGTTGAAGAAGGAGGTACG
CATCCTCTGCTGGGTGATGACCAATCCCACAAACCACAAGAAGAAGGCTC
GCCATGTGAAGCGAACCTGGGGCAAGCGCTGCAACATCTTGCTCTTCATG
AGTTCCGGCGCGGATGAGGAGCTGCCCACCGTGAAGCTCGACGTGGGCGA
GGGACGGGAGAATCTATGGGCCAAGGTCAAGGAGGCGTTCAAGTACGTCT
ATCATCACCACTATAACGACGCCGACTTCTTCTACAAGGCCGATGACGAC
ACTTACGCCGTGATCGAGAACATGCGGTATATGCTCTATCCGTACAATCC
CGAAACACCCGTGCACTTCGGATTCAAGTTCAAGCCCTTCGTGAAGCAGG
GCTACATGTCCGGCGGAGCGGGCTACATACTCAGTCGGGAGGCCCTGCGT
CGCTTCGTGGTCGAGGGCATTCCGAATCCCAAGATGTGCCTGCCGGGCAC
GGTGGTCAACGAGGACATCGAAATCGGGCGATGCATGGAGAACCTGAACG
TCACCGCCGGCGATTCCAGGGACGAAATCGGTCGCGGTCGCATGTTTCCC
TTCATACCGGAGCATCACTTGATCCCAGCCAAAGCGGATAAAAACTTTGG
TACTGGAACTACCTTTACTA
BO08029.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8708-PA | 933 | CG8708-RA | 1..882 | 17..898 | 4385 | 99.8 | Plus |
CG8708-PB | 1353 | CG8708-RB | 1..882 | 17..898 | 4385 | 99.8 | Plus |
CG9520-PB | 1167 | CG9520-RB | 624..713 | 625..714 | 150 | 86.6 | Plus |
CG9520-PC | 1167 | CG9520-RC | 624..713 | 625..714 | 150 | 86.6 | Plus |
CG9520-PA | 1167 | CG9520-RA | 624..713 | 625..714 | 150 | 86.6 | Plus |
CG9520-PB | 1167 | CG9520-RB | 338..385 | 339..386 | 140 | 91.6 | Plus |
CG9520-PC | 1167 | CG9520-RC | 338..385 | 339..386 | 140 | 91.6 | Plus |
CG9520-PA | 1167 | CG9520-RA | 338..385 | 339..386 | 140 | 91.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:39:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8708-RD | 1862 | CG8708-RD | 349..1253 | 17..920 | 4485 | 99.8 | Plus |
CG8708-RB | 1674 | CG8708-RB | 161..1065 | 17..920 | 4485 | 99.8 | Plus |
CG8708-RC | 1626 | CG8708-RC | 155..1017 | 59..920 | 4275 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:39:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8160068..8160931 | 920..58 | 4255 | 99.8 | Minus |
2L | 23513712 | 2L | 8944428..8944862 | 739..305 | 705 | 77.5 | Minus |
2R | 25286936 | 2R | 8161033..8161075 | 59..17 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:39:29 has no hits.
BO08029.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:35:46 Download gff for
BO08029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8708-PA | 1..904 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:25:06 Download gff for
BO08029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8708-PB | 1..904 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:06:00 Download gff for
BO08029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8708-RB | 150..1064 | 7..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:55:27 Download gff for
BO08029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8708-RB | 150..1064 | 7..919 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:55:27 Download gff for
BO08029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8160069..8160929 | 60..919 | 99 | <- | Minus |
2R | 8161033..8161086 | 7..59 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:06:00 Download gff for
BO08029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4047574..4048434 | 60..919 | 99 | <- | Minus |
arm_2R | 4048538..4048591 | 7..59 | 92 | | Minus |
BO08029.complete Sequence
964 bp (964 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631021
> BO08029.complete
GAAGTTATCAGTCGACATGACGAGTGCAAGTCTATTGTCGCGTTCCCTGC
TAACAGAAGCTCCGCGTTCTAAGAATCGCTCGGTGTTTACCTTGATTGCT
GGTTTGGTGGTCGGCTACTGCCTGGCTCAAATCTTCTCCAGCATTGCGCC
GCACGAGAGTCTCTATCCGTATCTCAGCAGACGGTTCAGCGATTCCCAGG
TGGCCACCGGTGGTCAATTGGCTCCGGAGCAGAGCGGGTTGAAGCATGAT
CATCGCAACGACAACGTCAGCGTGGCCGAGCAGTTGAAGAAGGAGGTACG
CATCCTCTGCTGGGTGATGACCAATCCCACAAACCACAAGAAGAAGGCTC
GCCATGTGAAGCGAACCTGGGGCAAGCGCTGCAACATCTTGCTCTTCATG
AGTTCCGGCGCGGATGAGGAGCTGCCCACCGTGAAGCTCGACGTGGGCGA
GGGACGGGAGAATCTATGGGCCAAGGTCAAGGAGGCGTTCAAGTACGTCT
ATCATCACCACTATAACGACGCCGACTTCTTCTACAAGGCCGATGACGAC
ACTTACGCCGTGATCGAGAACATGCGGTATATGCTCTATCCGTACAATCC
CGAAACACCCGTGCACTTCGGATTCAAGTTCAAGCCCTTCGTGAAGCAGG
GCTACATGTCCGGCGGAGCGGGCTACATACTCAGTCGGGAGGCCCTGCGT
CGCTTCGTGGTCGAGGGCATTCCGAATCCCAAGATGTGCCTGCCGGGCAC
GGTGGTCAACGAGGACATCGAAATCGGGCGATGCATGGAGAACCTGAACG
TCACCGCCGGCGATTCCAGGGACGAAATCGGTCGCGGTCGCATGTTTCCC
TTCATACCGGAGCATCACTTGATCCCAGCCAAGGCGGATAAAAACTTTTG
GTACTGGAACTACCTTTACTACAAGACGGATGACGTAAGTTTCGCCGCAA
GCTTTCTAGACCAT
BO08029.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:32:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8708-RD | 1353 | CG8708-PD | 1..919 | 17..935 | 4595 | 100 | Plus |
CG8708-RB | 1353 | CG8708-PB | 1..919 | 17..935 | 4595 | 100 | Plus |
CG8708-RC | 1335 | CG8708-PC | 25..901 | 59..935 | 4385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:32:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8708-RD | 1862 | CG8708-RD | 349..1267 | 17..935 | 4595 | 100 | Plus |
CG8708-RB | 1674 | CG8708-RB | 161..1079 | 17..935 | 4595 | 100 | Plus |
CG8708-RC | 1626 | CG8708-RC | 155..1031 | 59..935 | 4385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:32:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8160043..8160931 | 946..58 | 4445 | 100 | Minus |
2L | 23513712 | 2L | 8944428..8944862 | 739..305 | 705 | 77.5 | Minus |
2R | 25286936 | 2R | 8161033..8161075 | 59..17 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:32:13 has no hits.
BO08029.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:45 Download gff for
BO08029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8708-RA | 1..933 | 17..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:03 Download gff for
BO08029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8708-RA | 145..1085 | 7..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:17:23 Download gff for
BO08029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8708-RB | 161..1085 | 17..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:45 Download gff for
BO08029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8708-RA | 145..1085 | 7..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:37 Download gff for
BO08029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8708-RB | 161..1085 | 17..944 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:37 Download gff for
BO08029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8160040..8160929 | 60..948 | 99 | <- | Minus |
2R | 8161033..8161075 | 17..59 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:17:23 Download gff for
BO08029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4047545..4048434 | 60..948 | 99 | <- | Minus |
arm_2R | 4048538..4048580 | 17..59 | 100 | | Minus |
BO08029.pep Sequence
Translation from 16 to 964
> BO08029.pep
MTSASLLSRSLLTEAPRSKNRSVFTLIAGLVVGYCLAQIFSSIAPHESLY
PYLSRRFSDSQVATGGQLAPEQSGLKHDHRNDNVSVAEQLKKEVRILCWV
MTNPTNHKKKARHVKRTWGKRCNILLFMSSGADEELPTVKLDVGEGRENL
WAKVKEAFKYVYHHHYNDADFFYKADDDTYAVIENMRYMLYPYNPETPVH
FGFKFKPFVKQGYMSGGAGYILSREALRRFVVEGIPNPKMCLPGTVVNED
IEIGRCMENLNVTAGDSRDEIGRGRMFPFIPEHHLIPAKADKNFWYWNYL
YYKTDDVSFAASFLDH
BO08029.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8708-PD | 450 | CG8708-PD | 1..306 | 1..306 | 1648 | 100 | Plus |
CG8708-PB | 450 | CG8708-PB | 1..306 | 1..306 | 1648 | 100 | Plus |
CG8708-PC | 444 | CG8708-PC | 1..300 | 7..306 | 1591 | 97.7 | Plus |
C1GalTA-PA | 388 | CG9520-PA | 1..311 | 1..306 | 1066 | 62.2 | Plus |
C1GalTA-PC | 388 | CG9520-PC | 1..311 | 1..306 | 1066 | 62.2 | Plus |