Clone BO08029 Report

Search the DGRC for BO08029

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:80
Well:29
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO08029.pep: validated full length
Sequenced Size:964

Clone Sequence Records

BO08029.3prime Sequence

962 bp (764 high quality bases) assembled on 2006-01-06

> BO08029.3prime
ATGGTCTAGAAAGCTTGCGGCGAAACTTACGTCATCCGTCTTGTAGTAAA
GGTAGTTCCAGTACCAAAAGTTTTTATCCGCCTTGGCTGGGATCAAGTGA
TGCTCCGGTATGAAGGGAAACATGCGACCGCGACCGATTTCGTCCCTGGA
ATCGCCGGCGGTGACGTTCAGGTTCTCCATGCATCGCCCGATTTCGATGT
CCTCGTTGACCACCGTGCCCGGCAGGCACATCTTGGGATTCGGAATGCCC
TCGACCACGAAGCGACGCAGGGCCTCCCGACTGAGTATGTAGCCCGCTCC
GCCGGACATGTAGCCCTGCTTCACGAAGGGCTTGAACTTGAATCCGAAGT
GCACGGGTGTTTCGGGATTGTACGGATAGAGCATATACCGCATGTTCTCG
ATCACGGCGTAAGTGTCGTCATCGGCCTTGTAGAAGAAGTCGGCGTCGTT
ATAGTGGTGATGATAGACGTACTTGAACGCCTCCTTGACCTTGGCCCATA
GATTCTCCCGTCCCTCGCCCACGTCGAGCTTCACGGTGGGCAGCTCCTCA
TCCGCGCCGGAACTCATGAAGAGCAAGATGTTGCAGCGCTTGCCCCAGGT
TCGCTTCACATGGCGAGCCTTCTTCTTGTGGTTTGTGGGATTGGTCATCA
CCCAGCAGAGGATGCGTACCTCCTTCTTCAACTGCTCGGCCACGCTGACG
TTGTCGTTGCGATGATCATGCTTCAACCCGCTCTGCTCCGGAGCCAATTG
ACCACCGGTGGCCACCTGGGAATCGCTGAACCGTCTGCTGAGATACGGAT
AGAGACTCTCGTGCGGCGCAATGCTGGAGAAGATTTGAGCCAGGCAGTAG
CCGACCACCAAACCCAGCATCAAGGTAAACACCGAGCGATTCTTAGAACG
CGAAGCTTCTGTTAGCAGGGAACGCGACAATAGACTTGCACTCGTCATGT
CGACTGATAACT

BO08029.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8708-PA 933 CG8708-RA 85..930 864..19 4230 100 Minus
CG8708-PB 1353 CG8708-RB 85..919 864..30 4175 100 Minus
CG8708-PA 933 CG8708-RA 1..80 948..869 375 98.7 Minus
CG8708-PB 1353 CG8708-RB 1..80 948..869 375 98.7 Minus
CG9520-PB 1167 CG9520-RB 624..713 340..251 150 86.6 Minus
CG9520-PC 1167 CG9520-RC 624..713 340..251 150 86.6 Minus
CG9520-PA 1167 CG9520-RA 624..713 340..251 150 86.6 Minus
CG9520-PB 1167 CG9520-RB 338..385 626..579 140 91.6 Minus
CG9520-PC 1167 CG9520-RC 338..385 626..579 140 91.6 Minus
CG9520-PA 1167 CG9520-RA 338..385 626..579 140 91.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG8708-RD 1862 CG8708-RD 349..1267 948..30 4535 99.7 Minus
CG8708-RB 1674 CG8708-RB 161..1079 948..30 4535 99.7 Minus
CG8708-RC 1626 CG8708-RC 155..1031 906..30 4325 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:33:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8160043..8160931 19..907 4370 99.4 Plus
2L 23513712 2L 8944428..8944862 226..660 705 77.5 Plus
2R 25286936 2R 8161033..8161075 906..948 215 100 Plus
Blast to na_te.dros performed on 2015-02-13 16:33:41 has no hits.

BO08029.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:35:45 Download gff for BO08029.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8708-PA 1..933 16..948 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:25:05 Download gff for BO08029.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8708-PA 1..933 16..948 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:13:41 Download gff for BO08029.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8708-RB 150..1085 21..958 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 19:18:49 Download gff for BO08029.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8708-RB 150..1085 21..958 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:18:49 Download gff for BO08029.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8160043..8160929 19..905 99 <- Plus
2R 8161033..8161086 906..958 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:13:41 Download gff for BO08029.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4047548..4048434 19..905 99 <- Plus
arm_2R 4048538..4048591 906..958 92   Plus

BO08029.5prime Sequence

920 bp (821 high quality bases) assembled on 2006-01-06

> BO08029.5prime
GAAGTTATCAGTCGACATGACGAGTGCAAGTCTATTGTCGCGTTCCCTGC
TAACAGAAGCTCCGCGTTCTAAGAATCGCTCGGTGTTTACCTTGATTGCT
GGTTTGGTGGTCGGCTACTGCCTGGCTCAAATCTTCTCCAGCATTGCGCC
GCACGAGAGTCTCTATCCGTATCTCAGCAGACGGTTCAGCGATTCCCAGG
TGGCCACCGGTGGTCAATTGGCTCCGGAGCAGAGCGGGTTGAAGCATGAT
CATCGCAACGACAACGTCAGCGTGGCCGAGCAGTTGAAGAAGGAGGTACG
CATCCTCTGCTGGGTGATGACCAATCCCACAAACCACAAGAAGAAGGCTC
GCCATGTGAAGCGAACCTGGGGCAAGCGCTGCAACATCTTGCTCTTCATG
AGTTCCGGCGCGGATGAGGAGCTGCCCACCGTGAAGCTCGACGTGGGCGA
GGGACGGGAGAATCTATGGGCCAAGGTCAAGGAGGCGTTCAAGTACGTCT
ATCATCACCACTATAACGACGCCGACTTCTTCTACAAGGCCGATGACGAC
ACTTACGCCGTGATCGAGAACATGCGGTATATGCTCTATCCGTACAATCC
CGAAACACCCGTGCACTTCGGATTCAAGTTCAAGCCCTTCGTGAAGCAGG
GCTACATGTCCGGCGGAGCGGGCTACATACTCAGTCGGGAGGCCCTGCGT
CGCTTCGTGGTCGAGGGCATTCCGAATCCCAAGATGTGCCTGCCGGGCAC
GGTGGTCAACGAGGACATCGAAATCGGGCGATGCATGGAGAACCTGAACG
TCACCGCCGGCGATTCCAGGGACGAAATCGGTCGCGGTCGCATGTTTCCC
TTCATACCGGAGCATCACTTGATCCCAGCCAAAGCGGATAAAAACTTTGG
TACTGGAACTACCTTTACTA

BO08029.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8708-PA 933 CG8708-RA 1..882 17..898 4385 99.8 Plus
CG8708-PB 1353 CG8708-RB 1..882 17..898 4385 99.8 Plus
CG9520-PB 1167 CG9520-RB 624..713 625..714 150 86.6 Plus
CG9520-PC 1167 CG9520-RC 624..713 625..714 150 86.6 Plus
CG9520-PA 1167 CG9520-RA 624..713 625..714 150 86.6 Plus
CG9520-PB 1167 CG9520-RB 338..385 339..386 140 91.6 Plus
CG9520-PC 1167 CG9520-RC 338..385 339..386 140 91.6 Plus
CG9520-PA 1167 CG9520-RA 338..385 339..386 140 91.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG8708-RD 1862 CG8708-RD 349..1253 17..920 4485 99.8 Plus
CG8708-RB 1674 CG8708-RB 161..1065 17..920 4485 99.8 Plus
CG8708-RC 1626 CG8708-RC 155..1017 59..920 4275 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8160068..8160931 920..58 4255 99.8 Minus
2L 23513712 2L 8944428..8944862 739..305 705 77.5 Minus
2R 25286936 2R 8161033..8161075 59..17 215 100 Minus
Blast to na_te.dros performed on 2015-02-13 05:39:29 has no hits.

BO08029.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:35:46 Download gff for BO08029.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8708-PA 1..904 17..919 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:25:06 Download gff for BO08029.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8708-PB 1..904 17..919 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:06:00 Download gff for BO08029.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8708-RB 150..1064 7..919 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:55:27 Download gff for BO08029.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8708-RB 150..1064 7..919 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:55:27 Download gff for BO08029.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8160069..8160929 60..919 99 <- Minus
2R 8161033..8161086 7..59 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:06:00 Download gff for BO08029.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4047574..4048434 60..919 99 <- Minus
arm_2R 4048538..4048591 7..59 92   Minus

BO08029.complete Sequence

964 bp (964 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631021

> BO08029.complete
GAAGTTATCAGTCGACATGACGAGTGCAAGTCTATTGTCGCGTTCCCTGC
TAACAGAAGCTCCGCGTTCTAAGAATCGCTCGGTGTTTACCTTGATTGCT
GGTTTGGTGGTCGGCTACTGCCTGGCTCAAATCTTCTCCAGCATTGCGCC
GCACGAGAGTCTCTATCCGTATCTCAGCAGACGGTTCAGCGATTCCCAGG
TGGCCACCGGTGGTCAATTGGCTCCGGAGCAGAGCGGGTTGAAGCATGAT
CATCGCAACGACAACGTCAGCGTGGCCGAGCAGTTGAAGAAGGAGGTACG
CATCCTCTGCTGGGTGATGACCAATCCCACAAACCACAAGAAGAAGGCTC
GCCATGTGAAGCGAACCTGGGGCAAGCGCTGCAACATCTTGCTCTTCATG
AGTTCCGGCGCGGATGAGGAGCTGCCCACCGTGAAGCTCGACGTGGGCGA
GGGACGGGAGAATCTATGGGCCAAGGTCAAGGAGGCGTTCAAGTACGTCT
ATCATCACCACTATAACGACGCCGACTTCTTCTACAAGGCCGATGACGAC
ACTTACGCCGTGATCGAGAACATGCGGTATATGCTCTATCCGTACAATCC
CGAAACACCCGTGCACTTCGGATTCAAGTTCAAGCCCTTCGTGAAGCAGG
GCTACATGTCCGGCGGAGCGGGCTACATACTCAGTCGGGAGGCCCTGCGT
CGCTTCGTGGTCGAGGGCATTCCGAATCCCAAGATGTGCCTGCCGGGCAC
GGTGGTCAACGAGGACATCGAAATCGGGCGATGCATGGAGAACCTGAACG
TCACCGCCGGCGATTCCAGGGACGAAATCGGTCGCGGTCGCATGTTTCCC
TTCATACCGGAGCATCACTTGATCCCAGCCAAGGCGGATAAAAACTTTTG
GTACTGGAACTACCTTTACTACAAGACGGATGACGTAAGTTTCGCCGCAA
GCTTTCTAGACCAT

BO08029.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG8708-RD 1353 CG8708-PD 1..919 17..935 4595 100 Plus
CG8708-RB 1353 CG8708-PB 1..919 17..935 4595 100 Plus
CG8708-RC 1335 CG8708-PC 25..901 59..935 4385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8708-RD 1862 CG8708-RD 349..1267 17..935 4595 100 Plus
CG8708-RB 1674 CG8708-RB 161..1079 17..935 4595 100 Plus
CG8708-RC 1626 CG8708-RC 155..1031 59..935 4385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8160043..8160931 946..58 4445 100 Minus
2L 23513712 2L 8944428..8944862 739..305 705 77.5 Minus
2R 25286936 2R 8161033..8161075 59..17 215 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:32:13 has no hits.

BO08029.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:45 Download gff for BO08029.complete
Subject Subject Range Query Range Percent Splice Strand
CG8708-RA 1..933 17..949 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:03 Download gff for BO08029.complete
Subject Subject Range Query Range Percent Splice Strand
CG8708-RA 145..1085 7..946 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:17:23 Download gff for BO08029.complete
Subject Subject Range Query Range Percent Splice Strand
CG8708-RB 161..1085 17..944 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:45 Download gff for BO08029.complete
Subject Subject Range Query Range Percent Splice Strand
CG8708-RA 145..1085 7..946 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:37 Download gff for BO08029.complete
Subject Subject Range Query Range Percent Splice Strand
CG8708-RB 161..1085 17..944 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:37 Download gff for BO08029.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8160040..8160929 60..948 99 <- Minus
2R 8161033..8161075 17..59 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:17:23 Download gff for BO08029.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4047545..4048434 60..948 99 <- Minus
arm_2R 4048538..4048580 17..59 100   Minus

BO08029.pep Sequence

Translation from 16 to 964

> BO08029.pep
MTSASLLSRSLLTEAPRSKNRSVFTLIAGLVVGYCLAQIFSSIAPHESLY
PYLSRRFSDSQVATGGQLAPEQSGLKHDHRNDNVSVAEQLKKEVRILCWV
MTNPTNHKKKARHVKRTWGKRCNILLFMSSGADEELPTVKLDVGEGRENL
WAKVKEAFKYVYHHHYNDADFFYKADDDTYAVIENMRYMLYPYNPETPVH
FGFKFKPFVKQGYMSGGAGYILSREALRRFVVEGIPNPKMCLPGTVVNED
IEIGRCMENLNVTAGDSRDEIGRGRMFPFIPEHHLIPAKADKNFWYWNYL
YYKTDDVSFAASFLDH

BO08029.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG8708-PD 450 CG8708-PD 1..306 1..306 1648 100 Plus
CG8708-PB 450 CG8708-PB 1..306 1..306 1648 100 Plus
CG8708-PC 444 CG8708-PC 1..300 7..306 1591 97.7 Plus
C1GalTA-PA 388 CG9520-PA 1..311 1..306 1066 62.2 Plus
C1GalTA-PC 388 CG9520-PC 1..311 1..306 1066 62.2 Plus