Clone BO08031 Report

Search the DGRC for BO08031

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:80
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptSpn47C-RA
Protein status:BO08031.pep: validated full length
Sequenced Size:1180

Clone Sequence Records

BO08031.3prime Sequence

937 bp (889 high quality bases) assembled on 2006-01-06

> BO08031.3prime
ATGGTCTAGAAAGCTTGCGGGCTTAACGAAATGGCCAACGAAGTAAACGT
TTTTCCTGTCGCGTATGGCAAAAACAAAGGGGCGGTCGGCCTTGAAGAAC
TTGCGATCGGGATTCTTCTTAAGGACTTCGGGTTGGACCTCTGCTTCTGG
TGCTACTTCGCACCCAAATTCAGTAACATTTAAAAACACTTTGTGTCTAG
CCTCCGAAATCTTTTGTGGTGTTTTCATTTCGAAAAGATCGCTCAAATCC
GCTTGTCCAGCATCAAAAACACTATTAATACCCATCTTTTGTAGTGGAAC
CTTAAGATCAACAGTGCACTCGATCCTGAATTTTGGAATGGTTACATCCA
CTTCCTTCATTAGACTTTTGGCGGCTACCTCGTTCATGTCCAGTTGACCA
AGTTTTTCCTCCAATTCGGGCAAGCCATCAATAGCAGTTGGTAAGATAAT
CATCATGGTCAAATTGGATCTTTCAAACGGCAATTGCAGGATCTGTGACT
TTAGTTTCTTGGACTCCCCATAGCGGAACTGACCAATTTGCCTCATCATT
GAAACTTCCATTCGCTGCCGAGGATTTATCCAGAAGTCATCGATCTGGGT
AAGTTGCTGGGGGAATATCTTGTTCCATTTGGCTCGGAAGAACAGTGAGT
TTACAAGGATTACACTGGAATCGGAATTGAAAACCTCGGGCGTAAACAGA
TTTCGTACAGTGTAAAACGTGTGTTTTTCTAGCCACTTGTTAACTTTTTT
GACAGAATCTTCCGGGTTCAAGTAGTTAAGAGAATAAGCCTCAGCATTGA
AGAACTCCAAGGCCATGTCATTAAAGTCAGTCCGGATTTTCTCCTCTTCA
TTGACGTACAATCGTGTGACCAATCGCAGCGCAACTCCTTTTTTTGCACA
GGAGCACTCATCGGTCCAGGATTCCGCATGGTGTTTT

BO08031.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG7722-PA 1149 CG7722-RA 229..1146 936..19 4565 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:09:06
Subject Length Description Subject Range Query Range Score Percent Strand
Spn47C-RC 3114 CG7722-RC 305..1222 936..19 4575 99.9 Minus
Spn47C-RB 1351 CG7722-RB 305..1222 936..19 4575 99.9 Minus
Spn47C-RA 1356 CG7722-RA 310..1227 936..19 4575 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10940710..10941360 286..936 3240 99.8 Plus
2R 25286936 2R 10940507..10940654 141..288 740 100 Plus
2R 25286936 2R 10940317..10940441 19..143 625 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:09:04 has no hits.

BO08031.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:35:49 Download gff for BO08031.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7722-PA 228..1149 15..937 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:25:11 Download gff for BO08031.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7722-PA 228..1149 15..937 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:57:51 Download gff for BO08031.3prime
Subject Subject Range Query Range Percent Splice Strand
Spn47C-RA 306..1229 11..937 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:40:22 Download gff for BO08031.3prime
Subject Subject Range Query Range Percent Splice Strand
Spn47C-RA 309..1232 11..937 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:40:22 Download gff for BO08031.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10940312..10940438 11..140 96 <- Plus
2R 10940507..10940651 141..285 100 <- Plus
2R 10940710..10941360 286..937 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:57:51 Download gff for BO08031.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6827817..6827943 11..140 96 <- Plus
arm_2R 6828012..6828156 141..285 100 <- Plus
arm_2R 6828215..6828865 286..937 99   Plus

BO08031.5prime Sequence

878 bp (829 high quality bases) assembled on 2006-01-06

> BO08031.5prime
GAAGTTATCAGTCGACATGGCCTCCGGGGGCACTACGGCACCATCGCTGA
GTGCCAGTCCCATAGTCTTCGCCCGGAATCTGTTCCGGGCCCTGAACGAT
GAAGTTCCGCCCGTGAATATGATGGTATCTCCGGCTGGTGCCCGCAGTGC
CATGACCTTGGTGTTTATGGGGGCCGGCGGGAAGAGTGCAGATGAACTGC
GCTCCAAATTGATATTGGGTGTATCAAATAAATCGGAAGTGGCCAAACAA
CATGCGGAATCCTGGACCGATGAGTGCTCCTGTGCAAAAAAAGGAGTTGC
GCTGCGATTGGTCACACGATTGTACGTCAATGAAGAGGAGAAAATCCGGA
CTGACTTTAATGACATGGCCTTGGAGTTCTTCAATGCTGAGGCTTATTCT
CTTAACTACTTGAACCCGGAAGATTCTGTCAAAAAAGTTAACAAGTGGCT
AGAAAAACACACGTTTTACACTGTACGAAATCTGTTTACGCCCGAGGTTT
TCAATTCCGATTCCAGTGTAATCCTTGTAAACTCACTGTTCTTCCGAGCC
AAATGGAACAAGATATTCCCCCAGCAACTTACCCAGATCGATGACTTCTG
GATAAATCCTCGGCAGCGAATGGAAGTTTCAATGATGAGGCAAATTGGTC
AGTTCCGCTATGGGGAGTCCAAGAAACTAAAGTCACAGATCCTGCAATTG
CCGTTTGAAAGATCCAATTTGACCATGATGATTATCTTACCAACTGCTAT
TGATGGCTTGCCCGAATTGGAGGAAAAACTTGGTCAACTGGACATGAACG
AGGTAGCCGCCAAAAGTCTAATGAAGGAAGTGGATGTAACCATTCCAAAA
TTCAGGATCGAGTGCACTGTTGATCTTA

BO08031.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG7722-PA 1149 CG7722-RA 1..862 17..878 4310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:28:24
Subject Length Description Subject Range Query Range Score Percent Strand
Spn47C-RC 3114 CG7722-RC 77..938 17..878 4310 100 Plus
Spn47C-RB 1351 CG7722-RB 77..938 17..878 4310 100 Plus
Spn47C-RA 1356 CG7722-RA 82..943 17..878 4310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:28:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10940727..10941588 878..17 4310 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:28:20 has no hits.

BO08031.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:35:50 Download gff for BO08031.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7722-PA 1..861 17..877 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:25:12 Download gff for BO08031.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7722-PA 1..861 17..877 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:49:56 Download gff for BO08031.5prime
Subject Subject Range Query Range Percent Splice Strand
Spn47C-RA 79..939 17..877 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:13:58 Download gff for BO08031.5prime
Subject Subject Range Query Range Percent Splice Strand
Spn47C-RA 82..942 17..877 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:13:58 Download gff for BO08031.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10940728..10941588 17..877 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:49:56 Download gff for BO08031.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6828233..6829093 17..877 100   Minus

BO08031.complete Sequence

1180 bp (1180 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631022

> BO08031.complete
GAAGTTATCAGTCGACATGGCCTCCGGGGGCACTACGGCACCATCGCTGA
GTGCCAGTCCCATAGTCTTCGCCCGGAATCTGTTCCGGGCCCTGAACGAT
GAAGTTCCGCCCGTGAATATGATGGTATCTCCGGCTGGTGCCCGCAGTGC
CATGACCTTGGTGTTTATGGGGGCCGGCGGGAAGAGTGCAGATGAACTGC
GCTCCAAATTGATATTGGGTGTATCAAATAAATCGGAAGTGGCCAAACAA
CATGCGGAATCCTGGACCGATGAGTGCTCCTGTGCAAAAAAAGGAGTTGC
GCTGCGATTGGTCACACGATTGTACGTCAATGAAGAGGAGAAAATCCGGA
CTGACTTTAATGACATGGCCTTGGAGTTCTTCAATGCTGAGGCTTATTCT
CTTAACTACTTGAACCCGGAAGATTCTGTCAAAAAAGTTAACAAGTGGCT
AGAAAAACACACGTTTTACACTGTACGAAATCTGTTTACGCCCGAGGTTT
TCAATTCCGATTCCAGTGTAATCCTTGTAAACTCACTGTTCTTCCGAGCC
AAATGGAACAAGATATTCCCCCAGCAACTTACCCAGATCGATGACTTCTG
GATAAATCCTCGGCAGCGAATGGAAGTTTCAATGATGAGGCAAATTGGTC
AGTTCCGCTATGGGGAGTCCAAGAAACTAAAGTCACAGATCCTGCAATTG
CCGTTTGAAAGATCCAATTTGACCATGATGATTATCTTACCAACTGCTAT
TGATGGCTTGCCCGAATTGGAGGAAAAACTTGGTCAACTGGACATGAACG
AGGTAGCCGCCAAAAGTCTAATGAAGGAAGTGGATGTAACCATTCCAAAA
TTCAGGATCGAGTGCACTGTTGATCTTAAGGTTCCACTACAAAAGATGGG
TATTAATAGTGTTTTTGATGCTGGACAAGCGGATTTGAGCGATCTTTTCG
AAATGAAAACACCACAAAAGATTTCGGAGGCTAGACACAAAGTGTTTTTA
AATGTTACTGAATTTGGGTGCGAAGTAGCACCAGAAGCAGAGGTCCAACC
CGAAGTCCTTAAGAAGAATCCCGATCGCAAGTTCTTCAAGGCCGACCGCC
CCTTTGTTTTTGCCATACGCGACAGGAAAAACGTTTACTTCGTTGGCCAT
TTCGTTAAGCCCGCAAGCTTTCTAGACCAT

BO08031.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:51:16
Subject Length Description Subject Range Query Range Score Percent Strand
Spn47C-RC 1149 CG7722-PC 1..1146 17..1162 5730 100 Plus
Spn47C-RB 1149 CG7722-PB 1..1146 17..1162 5730 100 Plus
Spn47C-RA 1149 CG7722-PA 1..1146 17..1162 5730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
Spn47C-RC 3114 CG7722-RC 77..1222 17..1162 5730 100 Plus
Spn47C-RB 1351 CG7722-RB 77..1222 17..1162 5730 100 Plus
Spn47C-RA 1356 CG7722-RA 82..1227 17..1162 5730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10940710..10941588 895..17 4395 100 Minus
2R 25286936 2R 10940507..10940654 1040..893 740 100 Minus
2R 25286936 2R 10940317..10940441 1162..1038 625 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:51:15 has no hits.

BO08031.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:46 Download gff for BO08031.complete
Subject Subject Range Query Range Percent Splice Strand
CG7722-RA 1..1149 17..1166 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:04 Download gff for BO08031.complete
Subject Subject Range Query Range Percent Splice Strand
CG7722-RA 79..1229 17..1170 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:36:19 Download gff for BO08031.complete
Subject Subject Range Query Range Percent Splice Strand
Spn47C-RA 79..1224 17..1164 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:46 Download gff for BO08031.complete
Subject Subject Range Query Range Percent Splice Strand
CG7722-RA 79..1229 17..1170 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:11:36 Download gff for BO08031.complete
Subject Subject Range Query Range Percent Splice Strand
Spn47C-RA 82..1227 17..1164 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:11:36 Download gff for BO08031.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10940315..10940438 1041..1164 98 <- Minus
2R 10940507..10940651 896..1040 100 <- Minus
2R 10940710..10941588 17..895 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:36:19 Download gff for BO08031.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6827820..6827943 1041..1164 98 <- Minus
arm_2R 6828012..6828156 896..1040 100 <- Minus
arm_2R 6828215..6829093 17..895 100   Minus

BO08031.pep Sequence

Translation from 16 to 1180

> BO08031.pep
MASGGTTAPSLSASPIVFARNLFRALNDEVPPVNMMVSPAGARSAMTLVF
MGAGGKSADELRSKLILGVSNKSEVAKQHAESWTDECSCAKKGVALRLVT
RLYVNEEEKIRTDFNDMALEFFNAEAYSLNYLNPEDSVKKVNKWLEKHTF
YTVRNLFTPEVFNSDSSVILVNSLFFRAKWNKIFPQQLTQIDDFWINPRQ
RMEVSMMRQIGQFRYGESKKLKSQILQLPFERSNLTMMIILPTAIDGLPE
LEEKLGQLDMNEVAAKSLMKEVDVTIPKFRIECTVDLKVPLQKMGINSVF
DAGQADLSDLFEMKTPQKISEARHKVFLNVTEFGCEVAPEAEVQPEVLKK
NPDRKFFKADRPFVFAIRDRKNVYFVGHFVKPASFLDH

BO08031.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
Spn47C-PC 382 CG7722-PC 1..382 1..382 1959 100 Plus
Spn47C-PB 382 CG7722-PB 1..382 1..382 1959 100 Plus
Spn47C-PA 382 CG7722-PA 1..382 1..382 1959 100 Plus
Spn42Dc-PB 403 CG9455-PB 11..382 18..384 705 37.3 Plus
Spn42Dc-PA 403 CG9455-PA 11..382 18..384 705 37.3 Plus