Clone Sequence Records
BO08031.3prime Sequence
937 bp (889 high quality bases) assembled on 2006-01-06
> BO08031.3prime
ATGGTCTAGAAAGCTTGCGGGCTTAACGAAATGGCCAACGAAGTAAACGT
TTTTCCTGTCGCGTATGGCAAAAACAAAGGGGCGGTCGGCCTTGAAGAAC
TTGCGATCGGGATTCTTCTTAAGGACTTCGGGTTGGACCTCTGCTTCTGG
TGCTACTTCGCACCCAAATTCAGTAACATTTAAAAACACTTTGTGTCTAG
CCTCCGAAATCTTTTGTGGTGTTTTCATTTCGAAAAGATCGCTCAAATCC
GCTTGTCCAGCATCAAAAACACTATTAATACCCATCTTTTGTAGTGGAAC
CTTAAGATCAACAGTGCACTCGATCCTGAATTTTGGAATGGTTACATCCA
CTTCCTTCATTAGACTTTTGGCGGCTACCTCGTTCATGTCCAGTTGACCA
AGTTTTTCCTCCAATTCGGGCAAGCCATCAATAGCAGTTGGTAAGATAAT
CATCATGGTCAAATTGGATCTTTCAAACGGCAATTGCAGGATCTGTGACT
TTAGTTTCTTGGACTCCCCATAGCGGAACTGACCAATTTGCCTCATCATT
GAAACTTCCATTCGCTGCCGAGGATTTATCCAGAAGTCATCGATCTGGGT
AAGTTGCTGGGGGAATATCTTGTTCCATTTGGCTCGGAAGAACAGTGAGT
TTACAAGGATTACACTGGAATCGGAATTGAAAACCTCGGGCGTAAACAGA
TTTCGTACAGTGTAAAACGTGTGTTTTTCTAGCCACTTGTTAACTTTTTT
GACAGAATCTTCCGGGTTCAAGTAGTTAAGAGAATAAGCCTCAGCATTGA
AGAACTCCAAGGCCATGTCATTAAAGTCAGTCCGGATTTTCTCCTCTTCA
TTGACGTACAATCGTGTGACCAATCGCAGCGCAACTCCTTTTTTTGCACA
GGAGCACTCATCGGTCCAGGATTCCGCATGGTGTTTT
BO08031.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7722-PA | 1149 | CG7722-RA | 229..1146 | 936..19 | 4565 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:09:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn47C-RC | 3114 | CG7722-RC | 305..1222 | 936..19 | 4575 | 99.9 | Minus |
Spn47C-RB | 1351 | CG7722-RB | 305..1222 | 936..19 | 4575 | 99.9 | Minus |
Spn47C-RA | 1356 | CG7722-RA | 310..1227 | 936..19 | 4575 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:09:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10940710..10941360 | 286..936 | 3240 | 99.8 | Plus |
2R | 25286936 | 2R | 10940507..10940654 | 141..288 | 740 | 100 | Plus |
2R | 25286936 | 2R | 10940317..10940441 | 19..143 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:09:04 has no hits.
BO08031.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:35:49 Download gff for
BO08031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7722-PA | 228..1149 | 15..937 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:25:11 Download gff for
BO08031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7722-PA | 228..1149 | 15..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:57:51 Download gff for
BO08031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn47C-RA | 306..1229 | 11..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:40:22 Download gff for
BO08031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn47C-RA | 309..1232 | 11..937 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:40:22 Download gff for
BO08031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10940312..10940438 | 11..140 | 96 | <- | Plus |
2R | 10940507..10940651 | 141..285 | 100 | <- | Plus |
2R | 10940710..10941360 | 286..937 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:57:51 Download gff for
BO08031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6827817..6827943 | 11..140 | 96 | <- | Plus |
arm_2R | 6828012..6828156 | 141..285 | 100 | <- | Plus |
arm_2R | 6828215..6828865 | 286..937 | 99 | | Plus |
BO08031.5prime Sequence
878 bp (829 high quality bases) assembled on 2006-01-06
> BO08031.5prime
GAAGTTATCAGTCGACATGGCCTCCGGGGGCACTACGGCACCATCGCTGA
GTGCCAGTCCCATAGTCTTCGCCCGGAATCTGTTCCGGGCCCTGAACGAT
GAAGTTCCGCCCGTGAATATGATGGTATCTCCGGCTGGTGCCCGCAGTGC
CATGACCTTGGTGTTTATGGGGGCCGGCGGGAAGAGTGCAGATGAACTGC
GCTCCAAATTGATATTGGGTGTATCAAATAAATCGGAAGTGGCCAAACAA
CATGCGGAATCCTGGACCGATGAGTGCTCCTGTGCAAAAAAAGGAGTTGC
GCTGCGATTGGTCACACGATTGTACGTCAATGAAGAGGAGAAAATCCGGA
CTGACTTTAATGACATGGCCTTGGAGTTCTTCAATGCTGAGGCTTATTCT
CTTAACTACTTGAACCCGGAAGATTCTGTCAAAAAAGTTAACAAGTGGCT
AGAAAAACACACGTTTTACACTGTACGAAATCTGTTTACGCCCGAGGTTT
TCAATTCCGATTCCAGTGTAATCCTTGTAAACTCACTGTTCTTCCGAGCC
AAATGGAACAAGATATTCCCCCAGCAACTTACCCAGATCGATGACTTCTG
GATAAATCCTCGGCAGCGAATGGAAGTTTCAATGATGAGGCAAATTGGTC
AGTTCCGCTATGGGGAGTCCAAGAAACTAAAGTCACAGATCCTGCAATTG
CCGTTTGAAAGATCCAATTTGACCATGATGATTATCTTACCAACTGCTAT
TGATGGCTTGCCCGAATTGGAGGAAAAACTTGGTCAACTGGACATGAACG
AGGTAGCCGCCAAAAGTCTAATGAAGGAAGTGGATGTAACCATTCCAAAA
TTCAGGATCGAGTGCACTGTTGATCTTA
BO08031.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7722-PA | 1149 | CG7722-RA | 1..862 | 17..878 | 4310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:28:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn47C-RC | 3114 | CG7722-RC | 77..938 | 17..878 | 4310 | 100 | Plus |
Spn47C-RB | 1351 | CG7722-RB | 77..938 | 17..878 | 4310 | 100 | Plus |
Spn47C-RA | 1356 | CG7722-RA | 82..943 | 17..878 | 4310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:28:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10940727..10941588 | 878..17 | 4310 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:28:20 has no hits.
BO08031.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:35:50 Download gff for
BO08031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7722-PA | 1..861 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:25:12 Download gff for
BO08031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7722-PA | 1..861 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:49:56 Download gff for
BO08031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn47C-RA | 79..939 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:13:58 Download gff for
BO08031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn47C-RA | 82..942 | 17..877 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:13:58 Download gff for
BO08031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10940728..10941588 | 17..877 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:49:56 Download gff for
BO08031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6828233..6829093 | 17..877 | 100 | | Minus |
BO08031.complete Sequence
1180 bp (1180 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631022
> BO08031.complete
GAAGTTATCAGTCGACATGGCCTCCGGGGGCACTACGGCACCATCGCTGA
GTGCCAGTCCCATAGTCTTCGCCCGGAATCTGTTCCGGGCCCTGAACGAT
GAAGTTCCGCCCGTGAATATGATGGTATCTCCGGCTGGTGCCCGCAGTGC
CATGACCTTGGTGTTTATGGGGGCCGGCGGGAAGAGTGCAGATGAACTGC
GCTCCAAATTGATATTGGGTGTATCAAATAAATCGGAAGTGGCCAAACAA
CATGCGGAATCCTGGACCGATGAGTGCTCCTGTGCAAAAAAAGGAGTTGC
GCTGCGATTGGTCACACGATTGTACGTCAATGAAGAGGAGAAAATCCGGA
CTGACTTTAATGACATGGCCTTGGAGTTCTTCAATGCTGAGGCTTATTCT
CTTAACTACTTGAACCCGGAAGATTCTGTCAAAAAAGTTAACAAGTGGCT
AGAAAAACACACGTTTTACACTGTACGAAATCTGTTTACGCCCGAGGTTT
TCAATTCCGATTCCAGTGTAATCCTTGTAAACTCACTGTTCTTCCGAGCC
AAATGGAACAAGATATTCCCCCAGCAACTTACCCAGATCGATGACTTCTG
GATAAATCCTCGGCAGCGAATGGAAGTTTCAATGATGAGGCAAATTGGTC
AGTTCCGCTATGGGGAGTCCAAGAAACTAAAGTCACAGATCCTGCAATTG
CCGTTTGAAAGATCCAATTTGACCATGATGATTATCTTACCAACTGCTAT
TGATGGCTTGCCCGAATTGGAGGAAAAACTTGGTCAACTGGACATGAACG
AGGTAGCCGCCAAAAGTCTAATGAAGGAAGTGGATGTAACCATTCCAAAA
TTCAGGATCGAGTGCACTGTTGATCTTAAGGTTCCACTACAAAAGATGGG
TATTAATAGTGTTTTTGATGCTGGACAAGCGGATTTGAGCGATCTTTTCG
AAATGAAAACACCACAAAAGATTTCGGAGGCTAGACACAAAGTGTTTTTA
AATGTTACTGAATTTGGGTGCGAAGTAGCACCAGAAGCAGAGGTCCAACC
CGAAGTCCTTAAGAAGAATCCCGATCGCAAGTTCTTCAAGGCCGACCGCC
CCTTTGTTTTTGCCATACGCGACAGGAAAAACGTTTACTTCGTTGGCCAT
TTCGTTAAGCCCGCAAGCTTTCTAGACCAT
BO08031.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:51:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn47C-RC | 1149 | CG7722-PC | 1..1146 | 17..1162 | 5730 | 100 | Plus |
Spn47C-RB | 1149 | CG7722-PB | 1..1146 | 17..1162 | 5730 | 100 | Plus |
Spn47C-RA | 1149 | CG7722-PA | 1..1146 | 17..1162 | 5730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn47C-RC | 3114 | CG7722-RC | 77..1222 | 17..1162 | 5730 | 100 | Plus |
Spn47C-RB | 1351 | CG7722-RB | 77..1222 | 17..1162 | 5730 | 100 | Plus |
Spn47C-RA | 1356 | CG7722-RA | 82..1227 | 17..1162 | 5730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10940710..10941588 | 895..17 | 4395 | 100 | Minus |
2R | 25286936 | 2R | 10940507..10940654 | 1040..893 | 740 | 100 | Minus |
2R | 25286936 | 2R | 10940317..10940441 | 1162..1038 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:51:15 has no hits.
BO08031.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:46 Download gff for
BO08031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7722-RA | 1..1149 | 17..1166 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:04 Download gff for
BO08031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7722-RA | 79..1229 | 17..1170 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:36:19 Download gff for
BO08031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn47C-RA | 79..1224 | 17..1164 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:46 Download gff for
BO08031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7722-RA | 79..1229 | 17..1170 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:11:36 Download gff for
BO08031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn47C-RA | 82..1227 | 17..1164 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:11:36 Download gff for
BO08031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10940315..10940438 | 1041..1164 | 98 | <- | Minus |
2R | 10940507..10940651 | 896..1040 | 100 | <- | Minus |
2R | 10940710..10941588 | 17..895 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:36:19 Download gff for
BO08031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6827820..6827943 | 1041..1164 | 98 | <- | Minus |
arm_2R | 6828012..6828156 | 896..1040 | 100 | <- | Minus |
arm_2R | 6828215..6829093 | 17..895 | 100 | | Minus |
BO08031.pep Sequence
Translation from 16 to 1180
> BO08031.pep
MASGGTTAPSLSASPIVFARNLFRALNDEVPPVNMMVSPAGARSAMTLVF
MGAGGKSADELRSKLILGVSNKSEVAKQHAESWTDECSCAKKGVALRLVT
RLYVNEEEKIRTDFNDMALEFFNAEAYSLNYLNPEDSVKKVNKWLEKHTF
YTVRNLFTPEVFNSDSSVILVNSLFFRAKWNKIFPQQLTQIDDFWINPRQ
RMEVSMMRQIGQFRYGESKKLKSQILQLPFERSNLTMMIILPTAIDGLPE
LEEKLGQLDMNEVAAKSLMKEVDVTIPKFRIECTVDLKVPLQKMGINSVF
DAGQADLSDLFEMKTPQKISEARHKVFLNVTEFGCEVAPEAEVQPEVLKK
NPDRKFFKADRPFVFAIRDRKNVYFVGHFVKPASFLDH
BO08031.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn47C-PC | 382 | CG7722-PC | 1..382 | 1..382 | 1959 | 100 | Plus |
Spn47C-PB | 382 | CG7722-PB | 1..382 | 1..382 | 1959 | 100 | Plus |
Spn47C-PA | 382 | CG7722-PA | 1..382 | 1..382 | 1959 | 100 | Plus |
Spn42Dc-PB | 403 | CG9455-PB | 11..382 | 18..384 | 705 | 37.3 | Plus |
Spn42Dc-PA | 403 | CG9455-PA | 11..382 | 18..384 | 705 | 37.3 | Plus |