Clone Sequence Records
BO08032.3prime Sequence
854 bp (753 high quality bases) assembled on 2006-01-06
> BO08032.3prime
ATGGTCTAGAAAGCTTGCGATCTGCAGAGTCTGCTGCTCCGGCTGAACAT
TAATGTAGTTATCCTGCACGTCCTTGATCATGAAGTCCACCAGGTTGGAC
AGGTCGTACTTGTGCTGCCAGTGCCAGTCGCGCCGCGCATCGGAGTCATC
GAATACCTGCGGCCAGGCGTCTGCGATCAACTGGCGGCTATCTGGCTTGT
AGGTCACGTGCAGATTGGGCACGTGCTTGCCCAGCTGGGCGAACAGCTCC
TCGGGAGTGAAGGACATGGCGGTCACGTTGTAGACGCGGCGCTTCAGCTG
TTCGTTGGGAGCACGCATGAACTCGAGGAGAGCCCGCAAACAATCTTCAA
TGTACATCATGGGCAGTCTTGTGTCAGGACGCAGGTAGCAGGTGTACTTT
CCATTGCGCAGCGCTTCATGGAACACGGCCACAGCGTAATCTGTGGTGCC
GCCGCCCGGCGGATCACTGGAAATCACTCCTGGGAAGCGCAGGCATCTGA
AGTCCAGTCCAAACTTGTGGTAGTAGTATTCGCCAATCAGCTCGGCGTGC
ACCTTGGAAACGCCGTAAATGGTGCGCGGCCGTTGGATCGTAACATTCGG
CGTGGGATTGCGAGGACTGTCGGGACCGAAGGCTCCGATTGTGCTTGGTA
CGAAGATGCGGAGCTTATACTGCTTCGCCAGCTCGATGACGTTGTGGACA
CCCTCGATGTTGACCCTCACAGCCAGTGGAACATTTTGCTCTCCCACCGC
ACTCAGCAAGGCCGAGAAATGGATCAGCCAGTCAATGCGATGGTCCACAA
CGATCTTCTGGAGACCCTTGAAGTCCAGGATGTCGGCAAAAATGTAGGGG
ACAT
BO08032.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5955-PA | 1104 | CG5955-RA | 271..1101 | 849..19 | 4130 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:52:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5955-RA | 1314 | CG5955-RA | 339..1169 | 849..19 | 4140 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:52:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20469131..20469447 | 335..19 | 1585 | 100 | Minus |
3L | 28110227 | 3L | 20468312..20468460 | 589..441 | 745 | 100 | Minus |
3L | 28110227 | 3L | 20467835..20467969 | 849..715 | 660 | 99.3 | Minus |
3L | 28110227 | 3L | 20468125..20468253 | 717..589 | 645 | 100 | Minus |
3L | 28110227 | 3L | 20468964..20469072 | 442..334 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:52:38 has no hits.
BO08032.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:35:51 Download gff for
BO08032.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5955-PA | 266..1104 | 15..854 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:25:14 Download gff for
BO08032.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5955-PA | 266..1104 | 15..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:48:59 Download gff for
BO08032.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5955-RA | 334..1173 | 14..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:54:56 Download gff for
BO08032.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5955-RA | 334..1173 | 14..854 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:54:56 Download gff for
BO08032.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20467830..20467968 | 716..854 | 97 | -> | Minus |
3L | 20468127..20468253 | 589..715 | 100 | -> | Minus |
3L | 20468313..20468460 | 441..588 | 100 | -> | Minus |
3L | 20468966..20469071 | 335..440 | 100 | -> | Minus |
3L | 20469132..20469451 | 14..334 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:48:59 Download gff for
BO08032.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20460930..20461068 | 716..854 | 97 | -> | Minus |
arm_3L | 20461227..20461353 | 589..715 | 100 | -> | Minus |
arm_3L | 20461413..20461560 | 441..588 | 100 | -> | Minus |
arm_3L | 20462066..20462171 | 335..440 | 100 | -> | Minus |
arm_3L | 20462232..20462551 | 14..334 | 99 | | Minus |
BO08032.5prime Sequence
933 bp (790 high quality bases) assembled on 2006-01-06
> BO08032.5prime
GAAGTTATCAGTCGACATGTTTCGCAAATGCCTCGCCAGCCTGGCTTTGG
CCCCAGTTGCCAGTCCCATTCCGCTGCCCAGGATCACCCCGATCGCCAGC
CAGCTTGTCCAGCGTCGCGCGTTCCACCAGGTTCCTCGCGAGAGTAGGCC
ACCCAAAATTCTGATCACAGGTGGCTTGGGCCAGTTGGGCATCGAGTGCG
CCAAACTCCTGCGGACGCAGTATGGCAGCCAAAACGTGATCCTCTCGGAC
ATTATAAAGCCCAGTCAGTCGGTACTGGAGAATGGTCCCTACATTTTTGC
CGACATCCTGGACTTCAAGGGTCTCCAGAAGATCGTTGTGGACCATCGCA
TTGACTGGCTGATCCATTTCTCGGCCCTGCTGAGTGCGGTGGGAGAGCAA
AATGTTCCACTGGCTGTGAGGGTCAACATCGAGGGTGTCCACAACGTCAT
CGAGCTGGCGAAGCAGTATAAGCTCCGCATCTTCGTACCAAGCACAATCG
GAGCCTTCGGTCCCGACAGTCCTCGCAATCCCACGCCGAATGTTACGATC
CAACGGCCGCGCACCATTTACGGCGTTTCCAAGGTGCACGCCGAGCTGAT
TGGCGAATACTACTACCACAAGTTTGGACTGGACTTCAGATGCCTGCGCT
TCCCAGGAGTGATTTCCAGTGATCCGCCGGGCGGCGGCACCACAGATTAC
GCTGTGGCCGTGTTCCATGAAGCGCTGCGCAATGGAAAGTACACCTGCTA
CCTGCGTCCTGACACAAGACTGCCCATGATGTACATTGAAGATTGTTTGC
GGGCTCTCCTCGAGTTCATGCGTGCTCCCAACGAACAGCTGAAGCGCCGC
GTCTACAACGTGACCGCCATGTCCTTCACTCCCGAGGAGCTGTTCGCCCA
GCTGGGCCAGCACGTGCCCAATCTGCACGTGAA
BO08032.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5955-PA | 1104 | CG5955-RA | 1..916 | 17..932 | 4555 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:28:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5955-RA | 1314 | CG5955-RA | 69..984 | 17..932 | 4565 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:28:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20467716..20467969 | 168..421 | 1270 | 100 | Plus |
3L | 28110227 | 3L | 20467012..20467167 | 17..172 | 780 | 100 | Plus |
3L | 28110227 | 3L | 20468312..20468460 | 547..695 | 745 | 100 | Plus |
3L | 28110227 | 3L | 20468125..20468253 | 419..547 | 645 | 100 | Plus |
3L | 28110227 | 3L | 20469131..20469262 | 801..932 | 645 | 99.2 | Plus |
3L | 28110227 | 3L | 20468964..20469072 | 694..802 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:28:32 has no hits.
BO08032.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:35:52 Download gff for
BO08032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5955-PA | 1..915 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:25:15 Download gff for
BO08032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5955-PA | 1..915 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:49:57 Download gff for
BO08032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5955-RA | 62..984 | 8..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:14:36 Download gff for
BO08032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5955-RA | 62..984 | 8..933 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:14:36 Download gff for
BO08032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20467719..20467968 | 171..420 | 100 | -> | Plus |
3L | 20468127..20468253 | 421..547 | 100 | -> | Plus |
3L | 20468313..20468460 | 548..695 | 100 | -> | Plus |
3L | 20468966..20469071 | 696..801 | 100 | -> | Plus |
3L | 20469132..20469262 | 802..933 | 98 | | Plus |
3L | 20467005..20467165 | 8..170 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:49:57 Download gff for
BO08032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20460105..20460265 | 8..170 | 97 | -> | Plus |
arm_3L | 20460819..20461068 | 171..420 | 100 | -> | Plus |
arm_3L | 20461227..20461353 | 421..547 | 100 | -> | Plus |
arm_3L | 20461413..20461560 | 548..695 | 100 | -> | Plus |
arm_3L | 20462066..20462171 | 696..801 | 100 | -> | Plus |
arm_3L | 20462232..20462362 | 802..933 | 98 | | Plus |
BO08032.complete Sequence
1135 bp (1135 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631023
> BO08032.complete
GAAGTTATCAGTCGACATGTTTCGCAAATGCCTCGCCAGCCTGGCTTTGG
CCCCAGTTGCCAGTCCCATTCCGCTGCCCAGGATCACCCCGATCGCCAGC
CAGCTTGTCCAGCGTCGCGCGTTCCACCAGGTTCCTCGCGAGAGTAGGCC
ACCCAAAATTCTGATCACAGGTGGCTTGGGCCAGTTGGGCATCGAGTGCG
CCAAACTCCTGCGGACGCAGTATGGCAGCCAAAACGTGATCCTCTCGGAC
ATTATAAAGCCCAGTCAGTCGGTACTGGAGAATGGTCCCTACATTTTTGC
CGACATCCTGGACTTCAAGGGTCTCCAGAAGATCGTTGTGGACCATCGCA
TTGACTGGCTGATCCATTTCTCGGCCCTGCTGAGTGCGGTGGGAGAGCAA
AATGTTCCACTGGCTGTGAGGGTCAACATCGAGGGTGTCCACAACGTCAT
CGAGCTGGCGAAGCAGTATAAGCTCCGCATCTTCGTACCAAGCACAATCG
GAGCCTTCGGTCCCGACAGTCCTCGCAATCCCACGCCGAATGTTACGATC
CAACGGCCGCGCACCATTTACGGCGTTTCCAAGGTGCACGCCGAGCTGAT
TGGCGAATACTACTACCACAAGTTTGGACTGGACTTCAGATGCCTGCGCT
TCCCAGGAGTGATTTCCAGTGATCCGCCGGGCGGCGGCACCACAGATTAC
GCTGTGGCCGTGTTCCATGAAGCGCTGCGCAATGGAAAGTACACCTGCTA
CCTGCGTCCTGACACAAGACTGCCCATGATGTACATTGAAGATTGTTTGC
GGGCTCTCCTCGAGTTCATGCGTGCTCCCAACGAACAGCTGAAGCGCCGC
GTCTACAACGTGACCGCCATGTCCTTCACTCCCGAGGAGCTGTTCGCCCA
GCTGGGCAAGCACGTGCCCAATCTGCACGTGACCTACAAGCCAGATAGCC
GCCAGTTGATCGCAGACGCCTGGCCGCAGGTATTCGATGACTCCGATGCG
CGGCGCGACTGGCACTGGCAGCACAAGTACGACCTGTCCAACCTGGTGGA
CTTCATGATCAAGGACGTGCAGGATAACTACATTAATGTTCAGCCGGAGC
AGCAGACTCTGCAGATCGCAAGCTTTCTAGACCAT
BO08032.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:41:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5955-RA | 1104 | CG5955-PA | 1..1101 | 17..1117 | 5505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:41:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5955-RA | 1314 | CG5955-RA | 69..1169 | 17..1117 | 5505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:41:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20469131..20469447 | 801..1117 | 1585 | 100 | Plus |
3L | 28110227 | 3L | 20467716..20467969 | 168..421 | 1270 | 100 | Plus |
3L | 28110227 | 3L | 20467012..20467167 | 17..172 | 780 | 100 | Plus |
3L | 28110227 | 3L | 20468312..20468460 | 547..695 | 745 | 100 | Plus |
3L | 28110227 | 3L | 20468125..20468253 | 419..547 | 645 | 100 | Plus |
3L | 28110227 | 3L | 20468964..20469072 | 694..802 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:41:07 has no hits.
BO08032.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:32 Download gff for
BO08032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5955-RA | 1..1104 | 17..1121 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:46 Download gff for
BO08032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5955-RA | 58..1169 | 8..1122 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:43 Download gff for
BO08032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5955-RA | 75..1169 | 23..1119 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:32 Download gff for
BO08032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5955-RA | 58..1169 | 8..1122 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:42 Download gff for
BO08032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5955-RA | 75..1169 | 23..1119 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:42 Download gff for
BO08032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20469132..20469447 | 802..1119 | 99 | | Plus |
3L | 20467018..20467165 | 23..170 | 100 | -> | Plus |
3L | 20467719..20467968 | 171..420 | 100 | -> | Plus |
3L | 20468127..20468253 | 421..547 | 100 | -> | Plus |
3L | 20468313..20468460 | 548..695 | 100 | -> | Plus |
3L | 20468966..20469071 | 696..801 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:43 Download gff for
BO08032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20460118..20460265 | 23..170 | 100 | -> | Plus |
arm_3L | 20460819..20461068 | 171..420 | 100 | -> | Plus |
arm_3L | 20461227..20461353 | 421..547 | 100 | -> | Plus |
arm_3L | 20461413..20461560 | 548..695 | 100 | -> | Plus |
arm_3L | 20462066..20462171 | 696..801 | 100 | -> | Plus |
arm_3L | 20462232..20462547 | 802..1119 | 99 | | Plus |
BO08032.pep Sequence
Translation from 16 to 1135
> BO08032.pep
MFRKCLASLALAPVASPIPLPRITPIASQLVQRRAFHQVPRESRPPKILI
TGGLGQLGIECAKLLRTQYGSQNVILSDIIKPSQSVLENGPYIFADILDF
KGLQKIVVDHRIDWLIHFSALLSAVGEQNVPLAVRVNIEGVHNVIELAKQ
YKLRIFVPSTIGAFGPDSPRNPTPNVTIQRPRTIYGVSKVHAELIGEYYY
HKFGLDFRCLRFPGVISSDPPGGGTTDYAVAVFHEALRNGKYTCYLRPDT
RLPMMYIEDCLRALLEFMRAPNEQLKRRVYNVTAMSFTPEELFAQLGKHV
PNLHVTYKPDSRQLIADAWPQVFDDSDARRDWHWQHKYDLSNLVDFMIKD
VQDNYINVQPEQQTLQIASFLDH
BO08032.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5955-PA | 367 | CG5955-PA | 1..367 | 1..367 | 1934 | 100 | Plus |