Clone BO08032 Report

Search the DGRC for BO08032

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:80
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptCG5955-RA
Protein status:BO08032.pep: validated full length
Sequenced Size:1135

Clone Sequence Records

BO08032.3prime Sequence

854 bp (753 high quality bases) assembled on 2006-01-06

> BO08032.3prime
ATGGTCTAGAAAGCTTGCGATCTGCAGAGTCTGCTGCTCCGGCTGAACAT
TAATGTAGTTATCCTGCACGTCCTTGATCATGAAGTCCACCAGGTTGGAC
AGGTCGTACTTGTGCTGCCAGTGCCAGTCGCGCCGCGCATCGGAGTCATC
GAATACCTGCGGCCAGGCGTCTGCGATCAACTGGCGGCTATCTGGCTTGT
AGGTCACGTGCAGATTGGGCACGTGCTTGCCCAGCTGGGCGAACAGCTCC
TCGGGAGTGAAGGACATGGCGGTCACGTTGTAGACGCGGCGCTTCAGCTG
TTCGTTGGGAGCACGCATGAACTCGAGGAGAGCCCGCAAACAATCTTCAA
TGTACATCATGGGCAGTCTTGTGTCAGGACGCAGGTAGCAGGTGTACTTT
CCATTGCGCAGCGCTTCATGGAACACGGCCACAGCGTAATCTGTGGTGCC
GCCGCCCGGCGGATCACTGGAAATCACTCCTGGGAAGCGCAGGCATCTGA
AGTCCAGTCCAAACTTGTGGTAGTAGTATTCGCCAATCAGCTCGGCGTGC
ACCTTGGAAACGCCGTAAATGGTGCGCGGCCGTTGGATCGTAACATTCGG
CGTGGGATTGCGAGGACTGTCGGGACCGAAGGCTCCGATTGTGCTTGGTA
CGAAGATGCGGAGCTTATACTGCTTCGCCAGCTCGATGACGTTGTGGACA
CCCTCGATGTTGACCCTCACAGCCAGTGGAACATTTTGCTCTCCCACCGC
ACTCAGCAAGGCCGAGAAATGGATCAGCCAGTCAATGCGATGGTCCACAA
CGATCTTCTGGAGACCCTTGAAGTCCAGGATGTCGGCAAAAATGTAGGGG
ACAT

BO08032.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5955-PA 1104 CG5955-RA 271..1101 849..19 4130 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:52:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG5955-RA 1314 CG5955-RA 339..1169 849..19 4140 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:52:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20469131..20469447 335..19 1585 100 Minus
3L 28110227 3L 20468312..20468460 589..441 745 100 Minus
3L 28110227 3L 20467835..20467969 849..715 660 99.3 Minus
3L 28110227 3L 20468125..20468253 717..589 645 100 Minus
3L 28110227 3L 20468964..20469072 442..334 545 100 Minus
Blast to na_te.dros performed on 2015-02-13 05:52:38 has no hits.

BO08032.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:35:51 Download gff for BO08032.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5955-PA 266..1104 15..854 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:25:14 Download gff for BO08032.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5955-PA 266..1104 15..854 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:48:59 Download gff for BO08032.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5955-RA 334..1173 14..854 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:54:56 Download gff for BO08032.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5955-RA 334..1173 14..854 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:54:56 Download gff for BO08032.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20467830..20467968 716..854 97 -> Minus
3L 20468127..20468253 589..715 100 -> Minus
3L 20468313..20468460 441..588 100 -> Minus
3L 20468966..20469071 335..440 100 -> Minus
3L 20469132..20469451 14..334 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:48:59 Download gff for BO08032.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20460930..20461068 716..854 97 -> Minus
arm_3L 20461227..20461353 589..715 100 -> Minus
arm_3L 20461413..20461560 441..588 100 -> Minus
arm_3L 20462066..20462171 335..440 100 -> Minus
arm_3L 20462232..20462551 14..334 99   Minus

BO08032.5prime Sequence

933 bp (790 high quality bases) assembled on 2006-01-06

> BO08032.5prime
GAAGTTATCAGTCGACATGTTTCGCAAATGCCTCGCCAGCCTGGCTTTGG
CCCCAGTTGCCAGTCCCATTCCGCTGCCCAGGATCACCCCGATCGCCAGC
CAGCTTGTCCAGCGTCGCGCGTTCCACCAGGTTCCTCGCGAGAGTAGGCC
ACCCAAAATTCTGATCACAGGTGGCTTGGGCCAGTTGGGCATCGAGTGCG
CCAAACTCCTGCGGACGCAGTATGGCAGCCAAAACGTGATCCTCTCGGAC
ATTATAAAGCCCAGTCAGTCGGTACTGGAGAATGGTCCCTACATTTTTGC
CGACATCCTGGACTTCAAGGGTCTCCAGAAGATCGTTGTGGACCATCGCA
TTGACTGGCTGATCCATTTCTCGGCCCTGCTGAGTGCGGTGGGAGAGCAA
AATGTTCCACTGGCTGTGAGGGTCAACATCGAGGGTGTCCACAACGTCAT
CGAGCTGGCGAAGCAGTATAAGCTCCGCATCTTCGTACCAAGCACAATCG
GAGCCTTCGGTCCCGACAGTCCTCGCAATCCCACGCCGAATGTTACGATC
CAACGGCCGCGCACCATTTACGGCGTTTCCAAGGTGCACGCCGAGCTGAT
TGGCGAATACTACTACCACAAGTTTGGACTGGACTTCAGATGCCTGCGCT
TCCCAGGAGTGATTTCCAGTGATCCGCCGGGCGGCGGCACCACAGATTAC
GCTGTGGCCGTGTTCCATGAAGCGCTGCGCAATGGAAAGTACACCTGCTA
CCTGCGTCCTGACACAAGACTGCCCATGATGTACATTGAAGATTGTTTGC
GGGCTCTCCTCGAGTTCATGCGTGCTCCCAACGAACAGCTGAAGCGCCGC
GTCTACAACGTGACCGCCATGTCCTTCACTCCCGAGGAGCTGTTCGCCCA
GCTGGGCCAGCACGTGCCCAATCTGCACGTGAA

BO08032.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG5955-PA 1104 CG5955-RA 1..916 17..932 4555 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5955-RA 1314 CG5955-RA 69..984 17..932 4565 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:28:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20467716..20467969 168..421 1270 100 Plus
3L 28110227 3L 20467012..20467167 17..172 780 100 Plus
3L 28110227 3L 20468312..20468460 547..695 745 100 Plus
3L 28110227 3L 20468125..20468253 419..547 645 100 Plus
3L 28110227 3L 20469131..20469262 801..932 645 99.2 Plus
3L 28110227 3L 20468964..20469072 694..802 545 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:28:32 has no hits.

BO08032.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:35:52 Download gff for BO08032.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5955-PA 1..915 17..931 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:25:15 Download gff for BO08032.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5955-PA 1..915 17..931 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:49:57 Download gff for BO08032.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5955-RA 62..984 8..933 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:14:36 Download gff for BO08032.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5955-RA 62..984 8..933 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:14:36 Download gff for BO08032.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20467719..20467968 171..420 100 -> Plus
3L 20468127..20468253 421..547 100 -> Plus
3L 20468313..20468460 548..695 100 -> Plus
3L 20468966..20469071 696..801 100 -> Plus
3L 20469132..20469262 802..933 98   Plus
3L 20467005..20467165 8..170 97 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:49:57 Download gff for BO08032.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20460105..20460265 8..170 97 -> Plus
arm_3L 20460819..20461068 171..420 100 -> Plus
arm_3L 20461227..20461353 421..547 100 -> Plus
arm_3L 20461413..20461560 548..695 100 -> Plus
arm_3L 20462066..20462171 696..801 100 -> Plus
arm_3L 20462232..20462362 802..933 98   Plus

BO08032.complete Sequence

1135 bp (1135 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631023

> BO08032.complete
GAAGTTATCAGTCGACATGTTTCGCAAATGCCTCGCCAGCCTGGCTTTGG
CCCCAGTTGCCAGTCCCATTCCGCTGCCCAGGATCACCCCGATCGCCAGC
CAGCTTGTCCAGCGTCGCGCGTTCCACCAGGTTCCTCGCGAGAGTAGGCC
ACCCAAAATTCTGATCACAGGTGGCTTGGGCCAGTTGGGCATCGAGTGCG
CCAAACTCCTGCGGACGCAGTATGGCAGCCAAAACGTGATCCTCTCGGAC
ATTATAAAGCCCAGTCAGTCGGTACTGGAGAATGGTCCCTACATTTTTGC
CGACATCCTGGACTTCAAGGGTCTCCAGAAGATCGTTGTGGACCATCGCA
TTGACTGGCTGATCCATTTCTCGGCCCTGCTGAGTGCGGTGGGAGAGCAA
AATGTTCCACTGGCTGTGAGGGTCAACATCGAGGGTGTCCACAACGTCAT
CGAGCTGGCGAAGCAGTATAAGCTCCGCATCTTCGTACCAAGCACAATCG
GAGCCTTCGGTCCCGACAGTCCTCGCAATCCCACGCCGAATGTTACGATC
CAACGGCCGCGCACCATTTACGGCGTTTCCAAGGTGCACGCCGAGCTGAT
TGGCGAATACTACTACCACAAGTTTGGACTGGACTTCAGATGCCTGCGCT
TCCCAGGAGTGATTTCCAGTGATCCGCCGGGCGGCGGCACCACAGATTAC
GCTGTGGCCGTGTTCCATGAAGCGCTGCGCAATGGAAAGTACACCTGCTA
CCTGCGTCCTGACACAAGACTGCCCATGATGTACATTGAAGATTGTTTGC
GGGCTCTCCTCGAGTTCATGCGTGCTCCCAACGAACAGCTGAAGCGCCGC
GTCTACAACGTGACCGCCATGTCCTTCACTCCCGAGGAGCTGTTCGCCCA
GCTGGGCAAGCACGTGCCCAATCTGCACGTGACCTACAAGCCAGATAGCC
GCCAGTTGATCGCAGACGCCTGGCCGCAGGTATTCGATGACTCCGATGCG
CGGCGCGACTGGCACTGGCAGCACAAGTACGACCTGTCCAACCTGGTGGA
CTTCATGATCAAGGACGTGCAGGATAACTACATTAATGTTCAGCCGGAGC
AGCAGACTCTGCAGATCGCAAGCTTTCTAGACCAT

BO08032.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5955-RA 1104 CG5955-PA 1..1101 17..1117 5505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:41:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5955-RA 1314 CG5955-RA 69..1169 17..1117 5505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:41:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20469131..20469447 801..1117 1585 100 Plus
3L 28110227 3L 20467716..20467969 168..421 1270 100 Plus
3L 28110227 3L 20467012..20467167 17..172 780 100 Plus
3L 28110227 3L 20468312..20468460 547..695 745 100 Plus
3L 28110227 3L 20468125..20468253 419..547 645 100 Plus
3L 28110227 3L 20468964..20469072 694..802 545 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:41:07 has no hits.

BO08032.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:32 Download gff for BO08032.complete
Subject Subject Range Query Range Percent Splice Strand
CG5955-RA 1..1104 17..1121 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:46 Download gff for BO08032.complete
Subject Subject Range Query Range Percent Splice Strand
CG5955-RA 58..1169 8..1122 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:43 Download gff for BO08032.complete
Subject Subject Range Query Range Percent Splice Strand
CG5955-RA 75..1169 23..1119 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:32 Download gff for BO08032.complete
Subject Subject Range Query Range Percent Splice Strand
CG5955-RA 58..1169 8..1122 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:42 Download gff for BO08032.complete
Subject Subject Range Query Range Percent Splice Strand
CG5955-RA 75..1169 23..1119 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:42 Download gff for BO08032.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20469132..20469447 802..1119 99   Plus
3L 20467018..20467165 23..170 100 -> Plus
3L 20467719..20467968 171..420 100 -> Plus
3L 20468127..20468253 421..547 100 -> Plus
3L 20468313..20468460 548..695 100 -> Plus
3L 20468966..20469071 696..801 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:43 Download gff for BO08032.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20460118..20460265 23..170 100 -> Plus
arm_3L 20460819..20461068 171..420 100 -> Plus
arm_3L 20461227..20461353 421..547 100 -> Plus
arm_3L 20461413..20461560 548..695 100 -> Plus
arm_3L 20462066..20462171 696..801 100 -> Plus
arm_3L 20462232..20462547 802..1119 99   Plus

BO08032.pep Sequence

Translation from 16 to 1135

> BO08032.pep
MFRKCLASLALAPVASPIPLPRITPIASQLVQRRAFHQVPRESRPPKILI
TGGLGQLGIECAKLLRTQYGSQNVILSDIIKPSQSVLENGPYIFADILDF
KGLQKIVVDHRIDWLIHFSALLSAVGEQNVPLAVRVNIEGVHNVIELAKQ
YKLRIFVPSTIGAFGPDSPRNPTPNVTIQRPRTIYGVSKVHAELIGEYYY
HKFGLDFRCLRFPGVISSDPPGGGTTDYAVAVFHEALRNGKYTCYLRPDT
RLPMMYIEDCLRALLEFMRAPNEQLKRRVYNVTAMSFTPEELFAQLGKHV
PNLHVTYKPDSRQLIADAWPQVFDDSDARRDWHWQHKYDLSNLVDFMIKD
VQDNYINVQPEQQTLQIASFLDH

BO08032.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG5955-PA 367 CG5955-PA 1..367 1..367 1934 100 Plus