Clone Sequence Records
BO08036.3prime Sequence
923 bp (811 high quality bases) assembled on 2006-01-06
> BO08036.3prime
ATGGTCTAGAAAGCTTGCTAACCGACCCGAACTGGAGCTGGAGTCGCCTG
ATTTCTGAAAGATTCGCAGCGCTTCCTGCAGTGCGGAAATGTGTAGCTGC
ATTTTGGCTATTTGCCGGGAAGACGACTCGCAATTGCGGCAATGGGCAGG
CGAAGCAGCTGTGCTTGAATCGGAAATATGCTGGCTGGCTAACAACAGCT
GGGCATTCTGCGACTTGAGCTCGCCATTCTGGACTAGTAGCTCCTCGCAA
AGGGCGCACGCCGAGCAGCGTAGATCCTCCAGCGCCTGTTCGCGTGCCTT
GAGGTTGCGCATTAGCGCTCGATTCTCCCGCTTCAAGTTGAGCAGCTTCT
GCTCCAGCTCCAGCATCTCGTCCTCGCTGTCGCGTTCCAGCAGCGGATCA
CTGGGCTTCTTGGGCGCAACACTCGACTGGCCGCCCATGCGATTCATGGC
CTGCAGAATGGCGTCCATCTTGTGCTCCATTAACGCACCCGAGGCACGCT
GTTCGTCTAGATATTTGTCCAGTGTCGTCACAGCCAACGGAGTATCGCTG
CTCGTTGAAGCGTTGGCCACCGCCAGGGAACTGGCACTGAGTTTCCTGTG
AGCATTTGACGAACCTATGGGTCGCGGCACTGGCGTTACTATCACATCCT
CATTGGAAGGTGTCTCTGTTTCCCGTTCGCGTTCCTCATCGTCCGCCTTC
TCCAGCGTTGGCAGCGTTACGCGGGAACGTGGTTGCGGCTGTGGCGGATT
AGGCGTCGTCTTTGTGACCGTTGCTTTAGTTCGGATCTTAGATAAATCCT
CACGCGAAGGCGATGCCGAGCTGGAGGATGAGATCTCGCTGAGATAGTGC
TCCACTGGCAGTTTGTTTTTGACCATAAACGTTATGAATTCCTTCTCATC
GGGTTCTTGTCGAATCGCAGGCT
BO08036.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3342-PA | 1362 | CG3342-RA | 472..1359 | 906..19 | 4415 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:03:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3342-RA | 1709 | CG3342-RA | 539..1444 | 923..19 | 4490 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:03:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6526371..6527276 | 19..923 | 4465 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:03:53 has no hits.
BO08036.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:35:59 Download gff for
BO08036.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3342-PA | 454..1362 | 18..923 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:25:24 Download gff for
BO08036.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3342-PA | 454..1362 | 18..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:09:51 Download gff for
BO08036.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3342-RA | 539..1448 | 13..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:16:20 Download gff for
BO08036.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3342-RA | 539..1448 | 13..923 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:16:20 Download gff for
BO08036.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6526367..6527276 | 13..923 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:09:51 Download gff for
BO08036.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6420400..6421309 | 13..923 | 99 | | Plus |
BO08036.5prime Sequence
926 bp (796 high quality bases) assembled on 2006-01-06
> BO08036.5prime
GAAGTTATCAGTCGACATGGAAATCGGCAACGATCAGTCCTATCAGGACT
TCTTCGACAAGTTGCGAAGTGAATCGGGTCCTCGCAACTTGCGCCAGATC
TTTGAGGACGACGATCGTCCGCTGGCGAACGAATCATCCAGCTTGCGCTA
TCAGCCAGGCAGCTCCAAAAAATTGCAGGCTGGCAAAAGACCGGCCATGA
CCAGGAGTAGCACCCAGGAGACGGGTGATTCACCGCCTGCCGCCTGGAAC
ACGGCCATTGCCAAGGTGGTGCATGCCTATCGGAGCAGCGAGAACGTTGG
ACGCGTCGGCCTGGCCCTCTCGATTCTGGGCGAGATGGAGGCCAGCAAGC
TGATTGTCTACCGCAGCAAGAGTCAGGTGCTGACCACGCTGCAGTTGACA
CCGCGTGGCGGCAAGGTGATACTGCGCGAATCCTATCTGCAGTTCTACGA
TGACGAGCAGCGCTTCTGGAGCCTGCGATTCGACAAGGAACCGGATGAGA
AGGAATTCATAACGTTTATGGTCAAAAACAAACTGCCAGTGGAGCACTAT
CTCAGCGAGATCTCATCCTCCAGCTCGGCATCGCCTTCGCGTGAGGATTT
ATCTAAGATCCGAACTAAAGCAACGGTCACAAAGACGACGCCTAATCCGC
CACAGCCGCAACCACGTTCCCGCGTAACGCTGCCAACGCTGGAGAAGGCG
GACGATGAGGAACGCGAACGGGAAACAGAGACACCTTCCAATGAGGATGT
GATAGTAACGCCAGTGCCGCGACCCATAGGTTCGTCAAATGCTCACAGGA
AACTCAGTGCCAGTTCCCTGGCGGTGGCCAACGCTTCAACGAGCAGCGAT
ACTCCGTTGGCTGTGACGACACTGGACAAATATCTAGACGAACAGCGTGC
CTCGGGTGCGTTAATGAAGCACAAGA
BO08036.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3342-PA | 1362 | CG3342-RA | 1..910 | 17..926 | 4525 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:43:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3342-RA | 1709 | CG3342-RA | 85..995 | 16..926 | 4540 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:43:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6526820..6527678 | 926..68 | 4280 | 99.9 | Minus |
| X | 23542271 | X | 6527751..6527804 | 69..16 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:43:16 has no hits.
BO08036.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:00 Download gff for
BO08036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3342-PA | 1..909 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:25:25 Download gff for
BO08036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3342-PA | 1..909 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:09:08 Download gff for
BO08036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3342-RA | 76..994 | 7..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:21:47 Download gff for
BO08036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3342-RA | 76..994 | 7..925 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:21:47 Download gff for
BO08036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6526821..6527676 | 70..925 | 99 | <- | Minus |
| X | 6527751..6527810 | 7..69 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:09:08 Download gff for
BO08036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6420854..6421709 | 70..925 | 99 | <- | Minus |
| arm_X | 6421784..6421843 | 7..69 | 93 | | Minus |
BO08036.complete Sequence
1393 bp (1393 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631024
> BO08036.complete
GAAGTTATCAGTCGACATGGAAATCGGCAACGATCAGTCCTATCAGGACT
TCTTCGACAAGTTGCGAAGTGAATCGGGTCCTCGCAACTTGCGCCAGATC
TTTGAGGACGACGATCGTCCGCTGGCGAACGAATCATCCAGCTTGCGCTA
TCAGCCAGGCAGCTCCAAAAAATTGCAGGCTGGCAAAAGACCGGCCATGA
CCAGGAGTAGCACCCAGGAGACGGGTGATTCACCGCCTGCCGCCTGGAAC
ACGGCCATTGCCAAGGTGGTGCATGCCTATCGGAGCAGCGAGAACGTTGG
ACGCGTCGGCCTGGCCCTCTCGATTCTGGGCGAGATGGAGGCCAGCAAGC
TGATTGTCTACCGCAGCAAGAGTCAGGTGCTGACCACGCTGCAGTTGACA
CCGCGTGGCGGCAAGGTGATACTGCGCGAATCCTATCTGCAGTTCTACGA
TGACGAGCAGCGCTTCTGGAGCCTGCGATTCGACAAGGAACCGGATGAGA
AGGAATTCATAACGTTTATGGTCAAAAACAAACTGCCAGTGGAGCACTAT
CTCAGCGAGATCTCATCCTCCAGCTCGGCATCGCCTTCGCGTGAGGATTT
ATCTAAGATCCGAACTAAAGCAACGGTCACAAAGACGACGCCTAATCCGC
CACAGCCGCAACCACGTTCCCGCGTAACGCTGCCAACGCTGGAGAAGGCG
GACGATGAGGAACGCGAACGGGAAACAGAGACACCTTCCAATGAGGATGT
GATAGTAACGCCAGTGCCGCGACCCATAGGTTCGTCAAATGCTCACAGGA
AACTCAGTGCCAGTTCCCTGGCGGTGGCCAACGCTTCAACGAGCAGCGAT
ACTCCGTTGGCTGTGACGACACTGGACAAATATCTAGACGAACAGCGTGC
CTCGGGTGCGTTAATGGAGCACAAGATGGACGCCATTCTGCAGGCCATGA
ATCGCATGGGCGGCCAGTCGAGTGTTGCGCCCAAGAAGCCCAGTGATCCG
CTGCTGGAACGCGACAGCGAGGACGAGATGCTGGAGCTGGAGCAGAAGCT
GCTCAACTTGAAGCGGGAGAATCGAGCGCTAATGCGCAACCTCAAGGCAC
GCGAACAGGCGCTGGAGGATCTACGCTGCTCGGCGTGCGCCCTTTGCGAG
GAGCTACTAGTCCAGAATGGCGAGCTCAAGTCGCAGAATGCCCAGCTGTT
GTTAGCCAGCCAGCATATTTCCGATTCAAGCACAGCTGCTTCGCCTGCCC
ATTGCCGCAATTGCGAGTCGTCTTCCCGGCAAATAGCCAAAATGCAGCTA
CACATTTCCGCACTGCAGGAAGCGCTGCGAATCTTTCAGAAATCAGGCGA
CTCCAGCTCCAGTTCGGGTCGGTTAGCAAGCTTTCTAGACCAT
BO08036.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:09:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3342-RA | 1362 | CG3342-PA | 1..1359 | 17..1375 | 6795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3342-RA | 1709 | CG3342-RA | 85..1444 | 16..1375 | 6800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6526371..6527678 | 1375..68 | 6540 | 100 | Minus |
| X | 23542271 | X | 6527751..6527804 | 69..16 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:09:02 has no hits.
BO08036.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:33 Download gff for
BO08036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3342-RA | 1..1362 | 17..1376 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:48 Download gff for
BO08036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3342-RA | 49..1421 | 7..1381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:46:24 Download gff for
BO08036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3342-RA | 86..1444 | 17..1377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:34 Download gff for
BO08036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3342-RA | 49..1421 | 7..1381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:19:32 Download gff for
BO08036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3342-RA | 86..1444 | 17..1377 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:19:32 Download gff for
BO08036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6526367..6527676 | 70..1377 | 99 | <- | Minus |
| X | 6527751..6527803 | 17..69 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:46:24 Download gff for
BO08036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6420400..6421709 | 70..1377 | 99 | <- | Minus |
| arm_X | 6421784..6421836 | 17..69 | 100 | | Minus |
BO08036.pep Sequence
Translation from 16 to 1393
> BO08036.pep
MEIGNDQSYQDFFDKLRSESGPRNLRQIFEDDDRPLANESSSLRYQPGSS
KKLQAGKRPAMTRSSTQETGDSPPAAWNTAIAKVVHAYRSSENVGRVGLA
LSILGEMEASKLIVYRSKSQVLTTLQLTPRGGKVILRESYLQFYDDEQRF
WSLRFDKEPDEKEFITFMVKNKLPVEHYLSEISSSSSASPSREDLSKIRT
KATVTKTTPNPPQPQPRSRVTLPTLEKADDEERERETETPSNEDVIVTPV
PRPIGSSNAHRKLSASSLAVANASTSSDTPLAVTTLDKYLDEQRASGALM
EHKMDAILQAMNRMGGQSSVAPKKPSDPLLERDSEDEMLELEQKLLNLKR
ENRALMRNLKAREQALEDLRCSACALCEELLVQNGELKSQNAQLLLASQH
ISDSSTAASPAHCRNCESSSRQIAKMQLHISALQEALRIFQKSGDSSSSS
GRLASFLDH
BO08036.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3342-PA | 453 | CG3342-PA | 1..453 | 1..453 | 2272 | 100 | Plus |
