Clone Sequence Records
BO08045.3prime Sequence
831 bp (814 high quality bases) assembled on 2006-01-06
> BO08045.3prime
ATGGTCTAGAAAGCTTGCTCGTCTTAATTCCCATCCCCATCCCCACACTT
GTCCCAAGCCCAATCCCCGATTCATTCCGGCTACGGAAATCGAACCGGAG
ATGCAAACGTACACTAGAAATAACACAACCATTGTGGAGGCGTTGGCCTT
TTGGCGGCTTCCGTTCGCATGCTGCATGGCGGCTGGCTCCTCACCGTTCA
GCACATGCACCACCACCGTCTCCGTAATCTCATTGCCCAGCATGCAGGTG
TAGTTGCCCGTGTCCTGGCGATTGGCATTGGCGATATACAGGCGACTCAG
AGCTCGTCCTGGCAGCATGTCCGTCTTGACACTGATTCCTCCGCGACTAG
TATCGTAGTTGAGCAGGCGCGGTCCGTGCCGCCAGGTGATATAGGAGGAG
GGATGCGGAATCTTCGAAATGACGCACTGCAGCTCGATGGTGCTGCCAGC
CTTGTAGTACTTCTCCGGCGTGGCCGAGCCCCGCTCGTCGAGTATCTCCA
CGTGAGGAACAATTATAGTAAGGTAAACGAGCAGGACGAGCGGCGGATGC
GAGGACACCTGGCACTCGTAGGGACCCTCGTCCCGCTCGTTGGCGAACTG
GATGAGCAGCTTCCAATCGTTGGGCTCCTCGAACTCCAGCGAATACCGCG
AGTCGCCGCTATATGTGTGCTGGCCAAAGGTTATCAGGGTGAGATCATCG
CCACGGCGACGCATCCAGGACACCGTCTTGCCCTGCAGATCGTTCACCCG
GCAGTGCAGATAAACGCTGGACGAGAGCTGGGTGCTGATGTTCAGCGTGG
TGTACGGATCGGCGAAGAACGGGAACGGCTC
BO08045.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:15:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10946-PA | 1023 | dpr14-RA | 208..1020 | 831..19 | 4065 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:04:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr14-RB | 3794 | CG10946-RB | 867..1679 | 831..19 | 4065 | 100 | Minus |
dpr14-RA | 1668 | CG10946-RA | 684..1496 | 831..19 | 4065 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:04:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7906500..7906821 | 510..831 | 1610 | 100 | Plus |
X | 23542271 | X | 7906249..7906427 | 332..510 | 895 | 100 | Plus |
X | 23542271 | X | 7905819..7905995 | 19..195 | 885 | 100 | Plus |
X | 23542271 | X | 7906043..7906184 | 193..334 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:04:22 has no hits.
BO08045.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:16 Download gff for
BO08045.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr14-PA | 208..1023 | 16..831 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:25:49 Download gff for
BO08045.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10946-PA | 208..1023 | 16..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:10:02 Download gff for
BO08045.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr14-RA | 684..1496 | 19..831 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:17:42 Download gff for
BO08045.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr14-RA | 684..1496 | 19..831 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:17:42 Download gff for
BO08045.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7905819..7905994 | 19..194 | 100 | <- | Plus |
X | 7906045..7906181 | 195..331 | 100 | <- | Plus |
X | 7906249..7906426 | 332..509 | 100 | <- | Plus |
X | 7906500..7906821 | 510..831 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:10:02 Download gff for
BO08045.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7799852..7800027 | 19..194 | 100 | <- | Plus |
arm_X | 7800078..7800214 | 195..331 | 100 | <- | Plus |
arm_X | 7800282..7800459 | 332..509 | 100 | <- | Plus |
arm_X | 7800533..7800854 | 510..831 | 100 | | Plus |
BO08045.5prime Sequence
947 bp (903 high quality bases) assembled on 2006-01-06
> BO08045.5prime
GAAGTTATCAGTCGACATGAGATCGAGGCTGTTTTGGATACTGGCGATTA
TATACTCCTCACTCCATCACATCGGCTCGGGTTCCACGTCGACCACATTG
AAACGACCGCGAGCTGGCGATCCATTCGACACGTTTCCGAAGAACTTCTG
GCAGGAGTTCTCATCGCCGTTCACCGACACGCCCGAGGATGAGGAGCTGG
AGGTCACCGAGACGACCACCCACGAGCCGTTCCCGTTCTTCGCCGATCCG
TACACCACGCTGAACATCAGCACCCAGCTCTCGTCCAGCGTTTATCTGCA
CTGCCGGGTGAACGATCTGCAGGGCAAGACGGTGTCCTGGATGCGTCGCC
GTGGCGATGATCTCACCCTGATAACCTTTGGCCAGCACACATATAGCGGC
GACTCGCGGTATTCGCTGGAGTTCGAGGAGCCCAACGATTGGAAGCTGCT
CATCCAGTTCGCCAACGAGCGGGACGAGGGTCCCTACGAGTGCCAGGTGT
CCTCGCATCCGCCGCTCGTCCTGCTCGTTTACCTTACTATAATTGTTCCT
CACGTGGAGATACTCGACGAGCGGGGCTCGGCCACGCCGGAGAAGTACTA
CAAGGCTGGCAGCACCATCGAGCTGCAGTGCGTCATTTCGAAGATTCCGC
ATCCCTCCTCCTATATCACCTGGCGGCACGGACCGCGCCTGCTCAACTAC
GATACTAGTCGCGGAGGAATCAGTGTCAAGACGGACATGCTGCCAGGACG
AGCTCTGAGTCGCCTGTATATCGCCAATGCCAATCGCCAGGACACGGGCA
ACTACACCTGCATGCTGGGCAATGAGATTACGGAGACGGTGGTGGTGCAT
GTGCTGAACGGTGAGGAGCCAGCCGCCATGCAGCATGCGAACGGAAGCCG
CCAAAAGGGCCACGCCTCCACAATGGGTGTGTTATTTCTAGTGTACG
BO08045.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10946-PA | 1023 | dpr14-RA | 1..931 | 17..947 | 4580 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:06:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr14-RB | 3794 | CG10946-RB | 660..1590 | 17..947 | 4610 | 99.7 | Plus |
dpr14-RA | 1668 | CG10946-RA | 477..1407 | 17..947 | 4610 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:05:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7906500..7906946 | 545..99 | 2235 | 100 | Minus |
X | 23542271 | X | 7906249..7906427 | 723..545 | 895 | 100 | Minus |
X | 23542271 | X | 7906043..7906184 | 862..721 | 710 | 100 | Minus |
X | 23542271 | X | 7907257..7907338 | 98..17 | 410 | 100 | Minus |
X | 23542271 | X | 7905908..7905995 | 947..860 | 395 | 96.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:05:58 has no hits.
BO08045.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:17 Download gff for
BO08045.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr14-PA | 1..931 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:25:50 Download gff for
BO08045.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10946-PA | 1..931 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:47:17 Download gff for
BO08045.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr14-RA | 472..1407 | 9..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:02:54 Download gff for
BO08045.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr14-RA | 472..1407 | 9..947 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:02:54 Download gff for
BO08045.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7906249..7906426 | 546..723 | 100 | <- | Minus |
X | 7905908..7905994 | 861..947 | 96 | <- | Minus |
X | 7906045..7906181 | 724..860 | 100 | <- | Minus |
X | 7906500..7906946 | 99..545 | 100 | <- | Minus |
X | 7907257..7907343 | 9..98 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:47:17 Download gff for
BO08045.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7799941..7800027 | 861..947 | 96 | <- | Minus |
arm_X | 7800078..7800214 | 724..860 | 100 | <- | Minus |
arm_X | 7800282..7800459 | 546..723 | 100 | <- | Minus |
arm_X | 7800533..7800979 | 99..545 | 100 | <- | Minus |
arm_X | 7801290..7801376 | 9..98 | 96 | | Minus |
BO08045.complete Sequence
1054 bp (1054 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631025
> BO08045.complete
GAAGTTATCAGTCGACATGAGATCGAGGCTGTTTTGGATACTGGCGATTA
TATACTCCTCACTCCATCACATCGGCTCGGGTTCCACGTCGACCACATTG
AAACGACCGCGAGCTGGCGATCCATTCGACACGTTTCCGAAGAACTTCTG
GCAGGAGTTCTCATCGCCGTTCACCGACACGCCCGAGGATGAGGAGCTGG
AGGTCACCGAGACGACCACCCACGAGCCGTTCCCGTTCTTCGCCGATCCG
TACACCACGCTGAACATCAGCACCCAGCTCTCGTCCAGCGTTTATCTGCA
CTGCCGGGTGAACGATCTGCAGGGCAAGACGGTGTCCTGGATGCGTCGCC
GTGGCGATGATCTCACCCTGATAACCTTTGGCCAGCACACATATAGCGGC
GACTCGCGGTATTCGCTGGAGTTCGAGGAGCCCAACGATTGGAAGCTGCT
CATCCAGTTCGCCAACGAGCGGGACGAGGGTCCCTACGAGTGCCAGGTGT
CCTCGCATCCGCCGCTCGTCCTGCTCGTTTACCTTACTATAATTGTTCCT
CACGTGGAGATACTCGACGAGCGGGGCTCGGCCACGCCGGAGAAGTACTA
CAAGGCTGGCAGCACCATCGAGCTGCAGTGCGTCATTTCGAAGATTCCGC
ATCCCTCCTCCTATATCACCTGGCGGCACGGACCGCGCCTGCTCAACTAC
GATACTAGTCGCGGAGGAATCAGTGTCAAGACGGACATGCTGCCAGGACG
AGCTCTGAGTCGCCTGTATATCGCCAATGCCAATCGCCAGGACACGGGCA
ACTACACCTGCATGCTGGGCAATGAGATTACGGAGACGGTGGTGGTGCAT
GTGCTGAACGGTGAGGAGCCAGCCGCCATGCAGCATGCGAACGGAAGCCG
CCAAAAGGCCAACGCCTCCACAATGGTTGTGTTATTTCTAGTGTACGTTT
GCATCTCCGGTTCGATTTCCGTAGCCGGAATGAATCGGGGATTGGGCTTG
GGACAAGTGTGGGGATGGGGATGGGAATTAAGACGAGCAAGCTTTCTAGA
CCAT
BO08045.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:12:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr14-RB | 1023 | CG10946-PB | 1..1020 | 17..1036 | 5100 | 100 | Plus |
dpr14-RA | 1023 | CG10946-PA | 1..1020 | 17..1036 | 5100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:12:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr14-RB | 3794 | CG10946-RB | 660..1679 | 17..1036 | 5100 | 100 | Plus |
dpr14-RA | 1668 | CG10946-RA | 477..1496 | 17..1036 | 5100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:12:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7906500..7906946 | 545..99 | 2235 | 100 | Minus |
X | 23542271 | X | 7906249..7906427 | 723..545 | 895 | 100 | Minus |
X | 23542271 | X | 7905819..7905995 | 1036..860 | 885 | 100 | Minus |
X | 23542271 | X | 7906043..7906184 | 862..721 | 710 | 100 | Minus |
X | 23542271 | X | 7907257..7907338 | 98..17 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:12:30 has no hits.
BO08045.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:35 Download gff for
BO08045.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr14-RA | 1..1023 | 17..1039 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:49 Download gff for
BO08045.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr14-RA | 439..1463 | 9..1036 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:19:57 Download gff for
BO08045.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr14-RA | 477..1496 | 17..1038 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:35 Download gff for
BO08045.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr14-RA | 439..1463 | 9..1036 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:57 Download gff for
BO08045.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr14-RA | 477..1496 | 17..1038 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:57 Download gff for
BO08045.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7906045..7906181 | 724..860 | 100 | <- | Minus |
X | 7906249..7906426 | 546..723 | 100 | <- | Minus |
X | 7905815..7905994 | 861..1038 | 98 | <- | Minus |
X | 7906500..7906946 | 99..545 | 100 | <- | Minus |
X | 7907257..7907338 | 17..98 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:19:57 Download gff for
BO08045.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7799848..7800027 | 861..1038 | 98 | <- | Minus |
arm_X | 7800078..7800214 | 724..860 | 100 | <- | Minus |
arm_X | 7800282..7800459 | 546..723 | 100 | <- | Minus |
arm_X | 7800533..7800979 | 99..545 | 100 | <- | Minus |
arm_X | 7801290..7801371 | 17..98 | 100 | | Minus |
BO08045.pep Sequence
Translation from 16 to 1054
> BO08045.pep
MRSRLFWILAIIYSSLHHIGSGSTSTTLKRPRAGDPFDTFPKNFWQEFSS
PFTDTPEDEELEVTETTTHEPFPFFADPYTTLNISTQLSSSVYLHCRVND
LQGKTVSWMRRRGDDLTLITFGQHTYSGDSRYSLEFEEPNDWKLLIQFAN
ERDEGPYECQVSSHPPLVLLVYLTIIVPHVEILDERGSATPEKYYKAGST
IELQCVISKIPHPSSYITWRHGPRLLNYDTSRGGISVKTDMLPGRALSRL
YIANANRQDTGNYTCMLGNEITETVVVHVLNGEEPAAMQHANGSRQKANA
STMVVLFLVYVCISGSISVAGMNRGLGLGQVWGWGWELRRASFLDH
BO08045.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr14-PB | 340 | CG10946-PB | 1..340 | 1..340 | 1816 | 100 | Plus |
dpr14-PA | 340 | CG10946-PA | 1..340 | 1..340 | 1816 | 100 | Plus |
dpr20-PA | 525 | CG12191-PA | 278..520 | 83..317 | 527 | 41.6 | Plus |
dpr6-PC | 390 | CG14162-PC | 62..305 | 64..314 | 441 | 40.2 | Plus |
dpr6-PF | 396 | CG14162-PF | 62..311 | 64..314 | 424 | 39.2 | Plus |