Clone Sequence Records
BO08046.3prime Sequence
941 bp (805 high quality bases) assembled on 2006-01-06
> BO08046.3prime
ATGGTCTAGAAAGCTTGCGTACTCGGTGGCACCAATCACGCTGTACATGA
GACGATTGAAGGAGCCGCTCTGGCGTATGTTCTCATCGTGGGTGTTTACC
ACATTGTACGGCGGCCGGGATACTGGCGCTGATACTGGTTTCTTTCCTGG
AACCAATCTATTGGGCTGATAGACCTTAGTCTGCACAGGAATGGTCACTT
CCTGTGGCGAGGATTGGCCATAGTTGCTGTAGCCGCCCTCTTCTTGAATG
GCTCTGTAGGTTTCGCTGTTCCTGGGATCGTACTGGACAGTTTTCTTATA
GCCGTTAAGTTTTGTTGGCAAAGGACGATGCAAAGGACTGTCCTTCAAGC
GATTGCTTTCGCTTGTGGCGAAGGGAACTGTGGATCTGATGGTGTCCTCG
ATGTTGTTGTTGGAGTACAGGCCAATGGGCGAGTTGAATTGCTTGTGGAA
GACGCGGCCAGTGTCGGCTTCCGAACCGACCACCTTGTGCAGCATGGTGT
CGGCCACGCGCTGCTTCATGATACTGTCATGGTAGTCGTGTCCTGGGTGG
GCGCGCACAGCCGGGTTGGGGTAGTGCCTCAAGTAGGACTCTGTCGTGGG
CGCATCCTTCTTCACTTTGGCGCCGGGCAGGACCAGCGGAGTTGTACGGT
AGGGCTGATTCACAATGGCCGCCTGCTCCTCATCGACGTCTTGTTGATGG
TCCCTGGTTGGCTTGGGTGAGAACACAGTCGATGGCACCTCATAGCCACC
GGATGAGTTCAGCTGGGGAAACACGGTCTGCGGCAACGTGTCCACCGGCA
ACTGGAGGGCCCTCTCAAAGTGGCTGGGTCCGGGCAAAAAGGGCGACGGA
CCGCGGTGGGGCATCAGATCCGGAGTGACCGGCGGCAAAGTGGAGTTGCT
CCGAGATCCAGGACCTGCCTCCCTGAGTGCACCCTGCGTGT
BO08046.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6416-PE | 1293 | CG6416-RE | 387..1290 | 922..19 | 4520 | 100 | Minus |
CG6416-PF | 1209 | CG6416-RF | 303..1206 | 922..19 | 4520 | 100 | Minus |
CG6416-PJ | 720 | CG6416-RJ | 82..717 | 654..19 | 3180 | 100 | Minus |
CG6416-PA | 720 | CG6416-RA | 82..717 | 654..19 | 3180 | 100 | Minus |
CG6416-PB | 897 | CG6416-RB | 303..851 | 922..374 | 2745 | 100 | Minus |
CG6416-PI | 648 | CG6416-RI | 82..364 | 654..372 | 1415 | 100 | Minus |
CG6416-PI | 648 | CG6416-RI | 363..645 | 301..19 | 1415 | 100 | Minus |
CG6416-PH | 408 | CG6416-RH | 82..362 | 654..374 | 1405 | 100 | Minus |
CG6416-PG | 498 | CG6416-RG | 82..362 | 654..374 | 1405 | 100 | Minus |
CG6416-PB | 897 | CG6416-RB | 852..897 | 141..96 | 230 | 100 | Minus |
CG6416-PH | 408 | CG6416-RH | 363..408 | 141..96 | 230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:06:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Zasp66-RF | 1714 | CG6416-RF | 469..1391 | 941..19 | 4570 | 99.8 | Minus |
Zasp66-RE | 1725 | CG6416-RE | 480..1402 | 941..19 | 4570 | 99.8 | Minus |
Zasp66-RA | 1212 | CG6416-RA | 254..889 | 654..19 | 3180 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:06:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8627444..8627730 | 941..655 | 1360 | 98.3 | Minus |
3L | 28110227 | 3L | 8634580..8634785 | 657..452 | 1030 | 100 | Minus |
3L | 28110227 | 3L | 8637438..8637598 | 302..142 | 805 | 100 | Minus |
3L | 28110227 | 3L | 8638267..8638350 | 102..19 | 420 | 100 | Minus |
3L | 28110227 | 3L | 8635002..8635081 | 453..374 | 400 | 100 | Minus |
3L | 28110227 | 3L | 8635681..8635763 | 373..291 | 370 | 96.4 | Minus |
3L | 28110227 | 3L | 8638155..8638198 | 143..100 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:06:46 has no hits.
BO08046.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:18 Download gff for
BO08046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6416-PE | 368..1293 | 18..941 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:25:52 Download gff for
BO08046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6416-PF | 284..1209 | 18..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:10:23 Download gff for
BO08046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Zasp66-RE | 480..1402 | 19..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:15:37 Download gff for
BO08046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Zasp66-RE | 480..1402 | 19..941 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:15:37 Download gff for
BO08046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8627444..8627730 | 655..941 | 99 | -> | Minus |
3L | 8634583..8634783 | 454..654 | 100 | -> | Minus |
3L | 8635002..8635081 | 374..453 | 100 | -> | Minus |
3L | 8635681..8635752 | 302..373 | 100 | -> | Minus |
3L | 8637439..8637598 | 142..301 | 100 | -> | Minus |
3L | 8638157..8638195 | 103..141 | 100 | -> | Minus |
3L | 8638267..8638350 | 19..102 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:10:23 Download gff for
BO08046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8630539..8630698 | 142..301 | 100 | -> | Minus |
arm_3L | 8620544..8620830 | 655..941 | 99 | -> | Minus |
arm_3L | 8627683..8627883 | 454..654 | 100 | -> | Minus |
arm_3L | 8628102..8628181 | 374..453 | 100 | -> | Minus |
arm_3L | 8628781..8628852 | 302..373 | 100 | -> | Minus |
arm_3L | 8631257..8631295 | 103..141 | 100 | -> | Minus |
arm_3L | 8631367..8631450 | 19..102 | 100 | | Minus |
BO08046.5prime Sequence
827 bp (815 high quality bases) assembled on 2006-01-06
> BO08046.5prime
GAAGTTATCAGTCGACATGAGCCCCAAGCTGCATGAGTTTGCGGTGGTGC
TACTGCGCGATGGTCAGGCCACGCCCTGGGGCATTCGTTTGGTGGGCGGC
AACGATCTGGACACGCCGCTAATTATCACCAGGGTGCAAGTGGGCAGCCC
AGCGCATGGCGAACTTCTAAGAGGCGACATCATCTCGAAGATCGGCGAGT
ACGACGCACGCGACCTGAGTCATGCGGATGCACAGCAGCTGTTCCGCGGC
GCTGGCAACGAGATCCGCCTGGTGGTGCACAGGGACAACAAAATCGCCTA
CACGCAGGGTGCAACTCAGGAGGCAGGTCCTGGATCTCGGAGCAACTCCA
CTTTGCCGCCGGTCACTCCGGATCTGATGCCCCACCGCGGTCCGTCGCCC
TTTTTGCCCGGACCCAGCCACTTTGAGAGGGCCCTCCAGTTGCCGGTGGA
CACGTTGCCGCAGACCGTGTTTCCCCAGCTGAACTCATCCGGTGGCTATG
AGGTGCCATCGACTGTGTTCTCACCCAAGCCAACCAGGGACCATCAACAA
GACGTCGATGAGGAGCAGGCGGCCATTGTGAATCAGCCCTACCGTACAAC
TCCGCTGGTCCTGCCCGGCGCCAAAGTGAAGAAGGATGCGCCCACGACAG
AGTCCTACTTGAGGCACTACCCCAACCCGGCTGTGCGCGCCCACCCAGGA
CACGACTACCATGACAGTATCATGAAGCAGCGCGTGGCCGACACCATGCT
GCACAAGGTGGTCGGTTCGGAAGCCGACACTGGCCGCGTCTTCCACAAGC
AATTCAACTCGCCCATTGGCCTGTACT
BO08046.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6416-PB | 897 | CG6416-RB | 1..811 | 17..827 | 4055 | 100 | Plus |
CG6416-PF | 1209 | CG6416-RF | 1..811 | 17..827 | 4055 | 100 | Plus |
CG6416-PE | 1293 | CG6416-RE | 200..895 | 132..827 | 3480 | 100 | Plus |
CG6416-PJ | 720 | CG6416-RJ | 82..322 | 587..827 | 1205 | 100 | Plus |
CG6416-PA | 720 | CG6416-RA | 82..322 | 587..827 | 1205 | 100 | Plus |
CG6416-PG | 498 | CG6416-RG | 82..322 | 587..827 | 1205 | 100 | Plus |
CG6416-PH | 408 | CG6416-RH | 82..322 | 587..827 | 1205 | 100 | Plus |
CG6416-PI | 648 | CG6416-RI | 82..322 | 587..827 | 1205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:10:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Zasp66-RM | 1554 | CG6416-RM | 186..996 | 17..827 | 4055 | 100 | Plus |
Zasp66-RK | 1642 | CG6416-RK | 186..996 | 17..827 | 4055 | 100 | Plus |
Zasp66-RF | 1714 | CG6416-RF | 186..996 | 17..827 | 4055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:10:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8627424..8627730 | 280..586 | 1535 | 100 | Plus |
3L | 28110227 | 3L | 8634580..8634785 | 584..789 | 1030 | 100 | Plus |
3L | 28110227 | 3L | 8626960..8627110 | 133..283 | 755 | 100 | Plus |
3L | 28110227 | 3L | 8626394..8626512 | 17..135 | 595 | 100 | Plus |
3L | 28110227 | 3L | 8635002..8635041 | 788..827 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:10:09 has no hits.
BO08046.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:19 Download gff for
BO08046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6416-PF | 1..811 | 17..827 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:25:54 Download gff for
BO08046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6416-PF | 1..811 | 17..827 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:57:58 Download gff for
BO08046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Zasp66-RF | 180..996 | 7..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:45:34 Download gff for
BO08046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Zasp66-RF | 180..996 | 7..827 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:45:34 Download gff for
BO08046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8626388..8626510 | 7..133 | 96 | -> | Plus |
3L | 8626961..8627109 | 134..282 | 100 | -> | Plus |
3L | 8627427..8627730 | 283..586 | 100 | -> | Plus |
3L | 8634583..8634783 | 587..787 | 100 | -> | Plus |
3L | 8635002..8635041 | 788..827 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:57:58 Download gff for
BO08046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8619488..8619610 | 7..133 | 96 | -> | Plus |
arm_3L | 8620061..8620209 | 134..282 | 100 | -> | Plus |
arm_3L | 8620527..8620830 | 283..586 | 100 | -> | Plus |
arm_3L | 8627683..8627883 | 587..787 | 100 | -> | Plus |
arm_3L | 8628102..8628141 | 788..827 | 100 | | Plus |
BO08046.complete Sequence
1240 bp (1240 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631026
> BO08046.complete
GAAGTTATCAGTCGACATGAGCCCCAAGCTGCATGAGTTTGCGGTGGTGC
TACTGCGCGATGGTCAGGCCACGCCCTGGGGCATTCGTTTGGTGGGCGGC
AACGATCTGGACACGCCGCTAATTATCACCAGGGTGCAAGTGGGCAGCCC
AGCGCATGGCGAACTTCTAAGAGGCGACATCATCTCGAAGATCGGCGAGT
ACGACGCACGCGACCTGAGTCATGCGGATGCACAGCAGCTGTTCCGCGGC
GCTGGCAACGAGATCCGCCTGGTGGTGCACAGGGACAACAAAATCGCCTA
CACGCAGGGTGCAACTCAGGAGGCAGGTCCTGGATCTCGGAGCAACTCCA
CTTTGCCGCCGGTCACTCCGGATCTGATGCCCCACCGCGGTCCGTCGCCC
TTTTTGCCCGGACCCAGCCACTTTGAGAGGGCCCTCCAGTTGCCGGTGGA
CACGTTGCCGCAGACCGTGTTTCCCCAGCTGAACTCATCCGGTGGCTATG
AGGTGCCATCGACTGTGTTCTCACCCAAGCCAACCAGGGACCATCAACAA
GACGTCGATGAGGAGCAGGCGGCCATTGTGAATCAGCCCTACCGTACAAC
TCCGCTGGTCCTGCCCGGCGCCAAAGTGAAGAAGGATGCGCCCACGACAG
AGTCCTACTTGAGGCACTACCCCAACCCGGCTGTGCGCGCCCACCCAGGA
CACGACTACCATGACAGTATCATGAAGCAGCGCGTGGCCGACACCATGCT
GCACAAGGTGGTCGGTTCGGAAGCCGACACTGGCCGCGTCTTCCACAAGC
AATTCAACTCGCCCATTGGCCTGTACTCCAACAACAACATCGAGGACACC
ATCAGATCCACAGTTCCCTTCGCCACAAGCGAAAGCAATCGCTTGAAGGA
CAGTCCTTTGCATCGTCCTTTGCCAACAAAACTTAACGGCTATAAGAAAA
CTGTCCAGTACGATCCCAGGAACAGCGAAACCTACAGAGCCATTCAAGAA
GAGGGCGGCTACAGCAACTATGGCCAATCCTCGCCACAGGAAGTGACCAT
TCCTGTGCAGACTAAGGTCTATCAGCCCAATAGATTGGTTCCAGGAAAGA
AACCAGTATCAGCGCCAGTATCCCGGCCGCCGTACAATGTGGTAAACACC
CACGATGAGAACATACGCCAGAGCGGCTCCTTCAATCGTCTCATGTACAG
CGTGATTGGTGCCACCGAGTACGCAAGCTTTCTAGACCAT
BO08046.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:34:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Zasp66-RF | 1209 | CG6416-PF | 1..1206 | 17..1222 | 6030 | 100 | Plus |
Zasp66-RE | 1293 | CG6416-PE | 200..1290 | 132..1222 | 5455 | 100 | Plus |
Zasp66-RM | 969 | CG6416-PM | 1..923 | 17..939 | 4615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:34:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Zasp66-RF | 1714 | CG6416-RF | 186..1391 | 17..1222 | 6030 | 100 | Plus |
Zasp66-RE | 1725 | CG6416-RE | 312..1402 | 132..1222 | 5455 | 100 | Plus |
Zasp66-RM | 1554 | CG6416-RM | 186..1108 | 17..939 | 4615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:34:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8627424..8627730 | 280..586 | 1535 | 100 | Plus |
3L | 28110227 | 3L | 8634580..8634785 | 584..789 | 1030 | 100 | Plus |
3L | 28110227 | 3L | 8637438..8637598 | 939..1099 | 805 | 100 | Plus |
3L | 28110227 | 3L | 8626960..8627110 | 133..283 | 755 | 100 | Plus |
3L | 28110227 | 3L | 8626394..8626512 | 17..135 | 595 | 100 | Plus |
3L | 28110227 | 3L | 8638267..8638350 | 1139..1222 | 420 | 100 | Plus |
3L | 28110227 | 3L | 8635002..8635081 | 788..867 | 400 | 100 | Plus |
3L | 28110227 | 3L | 8635681..8635763 | 868..950 | 370 | 96.4 | Plus |
3L | 28110227 | 3L | 8638155..8638198 | 1098..1141 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:34:14 has no hits.
BO08046.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:36 Download gff for
BO08046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6416-RF | 1..1209 | 17..1223 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:56:53 Download gff for
BO08046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6416-RF | 186..1391 | 17..1224 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:53 Download gff for
BO08046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Zasp66-RF | 186..1391 | 17..1224 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:36 Download gff for
BO08046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6416-RF | 180..1391 | 7..1222 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:43 Download gff for
BO08046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Zasp66-RF | 186..1391 | 17..1224 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:43 Download gff for
BO08046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8626394..8626510 | 17..133 | 100 | -> | Plus |
3L | 8626961..8627109 | 134..282 | 100 | -> | Plus |
3L | 8627427..8627730 | 283..586 | 100 | -> | Plus |
3L | 8634583..8634783 | 587..787 | 100 | -> | Plus |
3L | 8635002..8635081 | 788..867 | 100 | -> | Plus |
3L | 8635681..8635752 | 868..939 | 100 | -> | Plus |
3L | 8637439..8637598 | 940..1099 | 100 | -> | Plus |
3L | 8638157..8638195 | 1100..1138 | 100 | -> | Plus |
3L | 8638267..8638350 | 1139..1224 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:53 Download gff for
BO08046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8627683..8627883 | 587..787 | 100 | -> | Plus |
arm_3L | 8628102..8628181 | 788..867 | 100 | -> | Plus |
arm_3L | 8620061..8620209 | 134..282 | 100 | -> | Plus |
arm_3L | 8620527..8620830 | 283..586 | 100 | -> | Plus |
arm_3L | 8628781..8628852 | 868..939 | 100 | -> | Plus |
arm_3L | 8630539..8630698 | 940..1099 | 100 | -> | Plus |
arm_3L | 8631257..8631295 | 1100..1138 | 100 | -> | Plus |
arm_3L | 8631367..8631450 | 1139..1224 | 97 | | Plus |
arm_3L | 8619494..8619610 | 17..133 | 100 | -> | Plus |
BO08046.pep Sequence
Translation from 16 to 1240
> BO08046.pep
MSPKLHEFAVVLLRDGQATPWGIRLVGGNDLDTPLIITRVQVGSPAHGEL
LRGDIISKIGEYDARDLSHADAQQLFRGAGNEIRLVVHRDNKIAYTQGAT
QEAGPGSRSNSTLPPVTPDLMPHRGPSPFLPGPSHFERALQLPVDTLPQT
VFPQLNSSGGYEVPSTVFSPKPTRDHQQDVDEEQAAIVNQPYRTTPLVLP
GAKVKKDAPTTESYLRHYPNPAVRAHPGHDYHDSIMKQRVADTMLHKVVG
SEADTGRVFHKQFNSPIGLYSNNNIEDTIRSTVPFATSESNRLKDSPLHR
PLPTKLNGYKKTVQYDPRNSETYRAIQEEGGYSNYGQSSPQEVTIPVQTK
VYQPNRLVPGKKPVSAPVSRPPYNVVNTHDENIRQSGSFNRLMYSVIGAT
EYASFLDH
BO08046.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Zasp66-PF | 402 | CG6416-PF | 1..402 | 1..402 | 2124 | 100 | Plus |
Zasp66-PK | 378 | CG6416-PK | 1..378 | 1..402 | 1963 | 94 | Plus |
Zasp66-PE | 430 | CG6416-PE | 68..430 | 40..402 | 1920 | 100 | Plus |
Zasp66-PN | 406 | CG6416-PN | 68..406 | 40..402 | 1759 | 93.4 | Plus |
Zasp66-PM | 322 | CG6416-PM | 1..320 | 1..320 | 1635 | 97.2 | Plus |