Clone Sequence Records
BO08047.3prime Sequence
852 bp (803 high quality bases) assembled on 2006-01-06
> BO08047.3prime
ATGGTCTAGAAAGCTTGCCTCAATGTCATCATCTTCGACCGTCGTGTCTT
TCGGGTTGTCCAGGAGTAGGGCCTCGTTATGATGCCTCACGTTGTAATGG
AAGAAGAAGGACTTGCTGTACTCGAAGGTGGAGATCATAATGGCGCAGGC
AGGTGCCACCTTCAGAAGCCTGGGTCCGCATCCTGCGAAGAGTCCCCGCA
CGCCGTGTGTCCTGTAAATACCCGTTAGTCTGCTGAAGGTCGACTTCTTT
CCAAAATCCCTCGCCGGCGAGTCCGTGAAGATGACCCTTTCTCCAAACTC
AATCTGCTCATGTGTCTTGACCACGTCGAAAGGAGTGGTCACAATGGCGG
CCACTGTCCCTGCCATCACGCCTGCCAAGAAACTCAGACTGAACGAGGGC
TGTGAGCCATGGCCGAGATTCTGTTTTAGGCTCTCATAGATGGGCCAGTA
AATCCCTGAAAAGGGCACGTCCCTGAGGATCGTGGGACGCAGGCCCCGCC
ACAAGCCCCACACGCCCTGAAGGGCCACCACACTCCGGACGAACTGCAGC
ATCTGGGCGTAGGTCTGGCGCTGGGCCTGCATCTTGGTTCTCACCAGCTC
GATGGGACTCACCACGGTAACAGCACAAATCCGAGCAGTCACCCCGGACA
TCATGGGAACCACCGACGGTAGACTTTTCTTGGTATCCCTGATTTCAAGG
TGCCGGGGCTCCTGACTCTTATTATAGTGGCTCTCGTAAATCTGGAGGTA
TCTGGCCTTGAACTGTTCATAGGCCACGAAATAGATTATGGTGGAGGGCA
GGGCGGAGACGAGGGTGGGACCCAGGCCGGACCAAAGAGCGGCCAATCCT
TC
BO08047.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2616-PA | 1350 | CG2616-RA | 514..1347 | 852..19 | 4170 | 100 | Minus |
CG14208-PB | 1326 | Tyler-RB | 1228..1286 | 150..92 | 170 | 91.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:53:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2616-RB | 1820 | CG2616-RB | 644..1477 | 852..19 | 4170 | 100 | Minus |
CG2616-RA | 1525 | CG2616-RA | 644..1477 | 852..19 | 4170 | 100 | Minus |
Shawn-RE | 3255 | CG14209-RE | 1469..1527 | 150..92 | 220 | 91.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:53:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7723701..7724372 | 690..19 | 3360 | 100 | Minus |
3R | 32079331 | 3R | 7723060..7723224 | 852..688 | 825 | 100 | Minus |
X | 23542271 | X | 19613229..19613287 | 150..92 | 220 | 91.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:53:24 has no hits.
BO08047.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:20 Download gff for
BO08047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2616-PA | 514..1350 | 18..852 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:25:55 Download gff for
BO08047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2616-PA | 514..1350 | 18..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:45:38 Download gff for
BO08047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2616-RA | 644..1477 | 19..852 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:35:10 Download gff for
BO08047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2616-RA | 644..1477 | 19..852 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:35:10 Download gff for
BO08047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7723060..7723223 | 689..852 | 100 | -> | Minus |
3R | 7723703..7724372 | 19..688 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:45:38 Download gff for
BO08047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3548782..3548945 | 689..852 | 100 | -> | Minus |
arm_3R | 3549425..3550094 | 19..688 | 100 | | Minus |
BO08047.5prime Sequence
862 bp (849 high quality bases) assembled on 2006-01-06
> BO08047.5prime
GAAGTTATCAGTCGACATGTCGAAGGAAGACTCAGGCGCATCCAGTGCAG
AGGCGAATCCAGCTGAATCGGAAATTTCGATGGGTCGAGGACCCCGCCCA
AGGTCCTTTACTGGCGGCGGAGGCGGTGGCGGAACAGGTGGATCAGGTGG
AAGTGGTGGTACCTCCGGCGGCAACAATCTCAAGCCCGAAAGAAGCGCCC
GGGAAGATGACGCCATCAACCGTCTGACGGACTCGAAGTCGAGTCACCGA
AAGCTGCTCAGCGATCCGCGATTCCAGATTCGGCCGCTGCAGCAGGTAAT
CTCGGCCTGCACCGGGGCCATGATCACGGCCTGCTTCATGACGCCCCTGG
ACGTGATCAAGACTCGCATGCAGTCGCAGCAGTCGCCGGCCCACAAGTGC
TTCTTCTATTCGAACGGGCTGATGGACCACCTCTTCGCAAGTGGACCCAA
TGGCTCCGAGTTGGCGAGCCTGCGGCAAAGACCACAGTTTTCCAGCTCCT
GGGATGCTCTGATGAAAATCAGCCGGCACGAAGGATTGGCCGCTCTTTGG
TCCGGCCTGGGTCCCACCCTCGTCTCCGCCCTGCCCTCCACCATAATCTA
TTTCGTGGCCTATGAACAGTTCAAGGCCAGATACCTCCAGATTTACGAGA
GCCACTATAATAAGAGTCAGGAGCCCCGGCACCTTGAAATCAGGGATACC
AAGAAAAGTCTACCGTCGGTGGTTCCCATGATGTCCGGGGTGACTGCTCG
GATTTGTGCTGTTACCGTGGTGAGTCCCATCGAGCTGGTGAGACCAAGAT
GCAGGCCCAGCGCCAGACCTACGCCCAGATGCTGCAGTTCGTCCGGAGTG
TGGTGGCCCTTC
BO08047.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2616-PA | 1350 | CG2616-RA | 1..777 | 17..793 | 3885 | 100 | Plus |
CG2616-PA | 1350 | CG2616-RA | 778..847 | 793..862 | 350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:37:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2616-RB | 1820 | CG2616-RB | 125..977 | 11..862 | 4225 | 99.8 | Plus |
CG2616-RA | 1525 | CG2616-RA | 125..977 | 11..862 | 4225 | 99.8 | Plus |
Shawn-RE | 3255 | CG14209-RE | 1998..2161 | 277..434 | 220 | 76.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:37:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7722541..7723224 | 11..694 | 3405 | 99.9 | Plus |
3R | 32079331 | 3R | 7723701..7723872 | 692..862 | 810 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:37:28 has no hits.
BO08047.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:20 Download gff for
BO08047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2616-PA | 1..847 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:25:57 Download gff for
BO08047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2616-PA | 1..847 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:59:30 Download gff for
BO08047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2616-RA | 120..977 | 3..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:17:13 Download gff for
BO08047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2616-RA | 120..977 | 3..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:17:13 Download gff for
BO08047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7722536..7723223 | 3..693 | 99 | -> | Plus |
3R | 7723703..7723872 | 694..862 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:59:30 Download gff for
BO08047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3548258..3548945 | 3..693 | 99 | -> | Plus |
arm_3R | 3549425..3549594 | 694..862 | 99 | | Plus |
BO08047.complete Sequence
1381 bp (1381 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631027
> BO08047.complete
GAAGTTATCAGTCGACATGTCGAAGGAAGACTCAGGCGCATCCAGTGCAG
AGGCGAATCCAGCTGAATCGGAAATTTCGATGGGTCGAGGACCCCGCCCA
AGGTCCTTTACTGGCGGCGGAGGCGGTGGCGGAACAGGTGGATCAGGTGG
AAGTGGTGGTACCTCCGGCGGCAACAATCTCAAGCCCGAAAGAAGCGCCC
GGGAAGATGACGCCATCAACCGTCTGACGGACTCGAAGTCGAGTCACCGA
AAGCTGCTCAGCGATCCGCGATTCCAGATTCGGCCGCTGCAGCAGGTAAT
CTCGGCCTGCACCGGGGCCATGATCACGGCCTGCTTCATGACGCCCCTGG
ACGTGATCAAGACTCGCATGCAGTCGCAGCAGTCGCCGGCCCACAAGTGC
TTCTTCTATTCGAACGGGCTGATGGACCACCTCTTCGCAAGTGGACCCAA
TGGCTCCGAGTTGGCGAGCCTGCGGCAAAGACCACAGTTTTCCAGCTCCT
GGGATGCTCTGATGAAAATCAGCCGGCACGAAGGATTGGCCGCTCTTTGG
TCCGGCCTGGGTCCCACCCTCGTCTCCGCCCTGCCCTCCACCATAATCTA
TTTCGTGGCCTATGAACAGTTCAAGGCCAGATACCTCCAGATTTACGAGA
GCCACTATAATAAGAGTCAGGAGCCCCGGCACCTTGAAATCAGGGATACC
AAGAAAAGTCTACCGTCGGTGGTTCCCATGATGTCCGGGGTGACTGCTCG
GATTTGTGCTGTTACCGTGGTGAGTCCCATCGAGCTGGTGAGAACCAAGA
TGCAGGCCCAGCGCCAGACCTACGCCCAGATGCTGCAGTTCGTCCGGAGT
GTGGTGGCCCTTCAGGGCGTGTGGGGCTTGTGGCGGGGCCTGCGTCCCAC
GATCCTCAGGGACGTGCCCTTTTCAGGGATTTACTGGCCCATCTATGAGA
GCCTAAAACAGAATCTCGGCCATGGCTCACAGCCCTCGTTCAGTCTGAGT
TTCTTGGCAGGCGTGATGGCAGGGACAGTGGCCGCCATTGTGACCACTCC
TTTCGACGTGGTCAAGACACATGAGCAGATTGAGTTTGGAGAAAGGGTCA
TCTTCACGGACTCGCCGGCGAGGGATTTTGGAAAGAAGTCGACCTTCAGC
AGACTAACGGGTATTTACAGGACACACGGCGTGCGGGGACTCTTCGCAGG
ATGCGGACCCAGGCTTCTGAAGGTGGCACCTGCCTGCGCCATTATGATCT
CCACCTTCGAGTACAGCAAGTCCTTCTTCTTCCATTACAACGTGAGGCAT
CATAACGAGGCCCTACTCCTGGACAACCCGAAAGACACGACGGTCGAAGA
TGATGACATTGAGGCAAGCTTTCTAGACCAT
BO08047.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:43:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2616-RB | 1350 | CG2616-PB | 1..1347 | 17..1363 | 6735 | 100 | Plus |
CG2616-RA | 1350 | CG2616-PA | 1..1347 | 17..1363 | 6735 | 100 | Plus |
Tyler-RB | 1326 | CG14208-PB | 1228..1286 | 1232..1290 | 220 | 91.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:43:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2616-RB | 1820 | CG2616-RB | 125..1477 | 11..1363 | 6750 | 99.9 | Plus |
CG2616-RA | 1525 | CG2616-RA | 125..1477 | 11..1363 | 6750 | 99.9 | Plus |
Shawn-RE | 3255 | CG14209-RE | 1469..1527 | 1232..1290 | 220 | 91.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:42:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7722541..7723224 | 11..694 | 3405 | 99.9 | Plus |
3R | 32079331 | 3R | 7723701..7724372 | 692..1363 | 3360 | 100 | Plus |
X | 23542271 | X | 19613229..19613287 | 1232..1290 | 220 | 91.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:42:59 has no hits.
BO08047.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:37 Download gff for
BO08047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2616-RA | 1..1350 | 17..1364 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:53 Download gff for
BO08047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2616-RA | 120..1477 | 3..1363 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:25 Download gff for
BO08047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2616-RA | 131..1477 | 17..1365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:38 Download gff for
BO08047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2616-RA | 120..1477 | 3..1363 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:57 Download gff for
BO08047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2616-RA | 131..1477 | 17..1365 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:57 Download gff for
BO08047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7722547..7723223 | 17..693 | 100 | -> | Plus |
3R | 7723703..7724372 | 694..1365 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:25 Download gff for
BO08047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3548269..3548945 | 17..693 | 100 | -> | Plus |
arm_3R | 3549425..3550094 | 694..1365 | 99 | | Plus |
BO08047.pep Sequence
Translation from 16 to 1381
> BO08047.pep
MSKEDSGASSAEANPAESEISMGRGPRPRSFTGGGGGGGTGGSGGSGGTS
GGNNLKPERSAREDDAINRLTDSKSSHRKLLSDPRFQIRPLQQVISACTG
AMITACFMTPLDVIKTRMQSQQSPAHKCFFYSNGLMDHLFASGPNGSELA
SLRQRPQFSSSWDALMKISRHEGLAALWSGLGPTLVSALPSTIIYFVAYE
QFKARYLQIYESHYNKSQEPRHLEIRDTKKSLPSVVPMMSGVTARICAVT
VVSPIELVRTKMQAQRQTYAQMLQFVRSVVALQGVWGLWRGLRPTILRDV
PFSGIYWPIYESLKQNLGHGSQPSFSLSFLAGVMAGTVAAIVTTPFDVVK
THEQIEFGERVIFTDSPARDFGKKSTFSRLTGIYRTHGVRGLFAGCGPRL
LKVAPACAIMISTFEYSKSFFFHYNVRHHNEALLLDNPKDTTVEDDDIEA
SFLDH
BO08047.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2616-PB | 449 | CG2616-PB | 1..449 | 1..449 | 2336 | 100 | Plus |
CG2616-PA | 449 | CG2616-PA | 1..449 | 1..449 | 2336 | 100 | Plus |
Shawn-PE | 387 | CG14209-PE | 22..378 | 73..432 | 1122 | 60.2 | Plus |
Shawn-PD | 387 | CG14209-PD | 22..378 | 73..432 | 1122 | 60.2 | Plus |
Shawn-PC | 387 | CG14209-PC | 22..378 | 73..432 | 1122 | 60.2 | Plus |