Clone BO08047 Report

Search the DGRC for BO08047

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:80
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG2616-RA
Protein status:BO08047.pep: validated full length
Sequenced Size:1381

Clone Sequence Records

BO08047.3prime Sequence

852 bp (803 high quality bases) assembled on 2006-01-06

> BO08047.3prime
ATGGTCTAGAAAGCTTGCCTCAATGTCATCATCTTCGACCGTCGTGTCTT
TCGGGTTGTCCAGGAGTAGGGCCTCGTTATGATGCCTCACGTTGTAATGG
AAGAAGAAGGACTTGCTGTACTCGAAGGTGGAGATCATAATGGCGCAGGC
AGGTGCCACCTTCAGAAGCCTGGGTCCGCATCCTGCGAAGAGTCCCCGCA
CGCCGTGTGTCCTGTAAATACCCGTTAGTCTGCTGAAGGTCGACTTCTTT
CCAAAATCCCTCGCCGGCGAGTCCGTGAAGATGACCCTTTCTCCAAACTC
AATCTGCTCATGTGTCTTGACCACGTCGAAAGGAGTGGTCACAATGGCGG
CCACTGTCCCTGCCATCACGCCTGCCAAGAAACTCAGACTGAACGAGGGC
TGTGAGCCATGGCCGAGATTCTGTTTTAGGCTCTCATAGATGGGCCAGTA
AATCCCTGAAAAGGGCACGTCCCTGAGGATCGTGGGACGCAGGCCCCGCC
ACAAGCCCCACACGCCCTGAAGGGCCACCACACTCCGGACGAACTGCAGC
ATCTGGGCGTAGGTCTGGCGCTGGGCCTGCATCTTGGTTCTCACCAGCTC
GATGGGACTCACCACGGTAACAGCACAAATCCGAGCAGTCACCCCGGACA
TCATGGGAACCACCGACGGTAGACTTTTCTTGGTATCCCTGATTTCAAGG
TGCCGGGGCTCCTGACTCTTATTATAGTGGCTCTCGTAAATCTGGAGGTA
TCTGGCCTTGAACTGTTCATAGGCCACGAAATAGATTATGGTGGAGGGCA
GGGCGGAGACGAGGGTGGGACCCAGGCCGGACCAAAGAGCGGCCAATCCT
TC

BO08047.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG2616-PA 1350 CG2616-RA 514..1347 852..19 4170 100 Minus
CG14208-PB 1326 Tyler-RB 1228..1286 150..92 170 91.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG2616-RB 1820 CG2616-RB 644..1477 852..19 4170 100 Minus
CG2616-RA 1525 CG2616-RA 644..1477 852..19 4170 100 Minus
Shawn-RE 3255 CG14209-RE 1469..1527 150..92 220 91.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:53:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7723701..7724372 690..19 3360 100 Minus
3R 32079331 3R 7723060..7723224 852..688 825 100 Minus
X 23542271 X 19613229..19613287 150..92 220 91.5 Minus
Blast to na_te.dros performed on 2015-02-11 17:53:24 has no hits.

BO08047.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:20 Download gff for BO08047.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2616-PA 514..1350 18..852 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:25:55 Download gff for BO08047.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2616-PA 514..1350 18..852 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:45:38 Download gff for BO08047.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2616-RA 644..1477 19..852 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:35:10 Download gff for BO08047.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2616-RA 644..1477 19..852 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:35:10 Download gff for BO08047.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7723060..7723223 689..852 100 -> Minus
3R 7723703..7724372 19..688 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:45:38 Download gff for BO08047.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3548782..3548945 689..852 100 -> Minus
arm_3R 3549425..3550094 19..688 100   Minus

BO08047.5prime Sequence

862 bp (849 high quality bases) assembled on 2006-01-06

> BO08047.5prime
GAAGTTATCAGTCGACATGTCGAAGGAAGACTCAGGCGCATCCAGTGCAG
AGGCGAATCCAGCTGAATCGGAAATTTCGATGGGTCGAGGACCCCGCCCA
AGGTCCTTTACTGGCGGCGGAGGCGGTGGCGGAACAGGTGGATCAGGTGG
AAGTGGTGGTACCTCCGGCGGCAACAATCTCAAGCCCGAAAGAAGCGCCC
GGGAAGATGACGCCATCAACCGTCTGACGGACTCGAAGTCGAGTCACCGA
AAGCTGCTCAGCGATCCGCGATTCCAGATTCGGCCGCTGCAGCAGGTAAT
CTCGGCCTGCACCGGGGCCATGATCACGGCCTGCTTCATGACGCCCCTGG
ACGTGATCAAGACTCGCATGCAGTCGCAGCAGTCGCCGGCCCACAAGTGC
TTCTTCTATTCGAACGGGCTGATGGACCACCTCTTCGCAAGTGGACCCAA
TGGCTCCGAGTTGGCGAGCCTGCGGCAAAGACCACAGTTTTCCAGCTCCT
GGGATGCTCTGATGAAAATCAGCCGGCACGAAGGATTGGCCGCTCTTTGG
TCCGGCCTGGGTCCCACCCTCGTCTCCGCCCTGCCCTCCACCATAATCTA
TTTCGTGGCCTATGAACAGTTCAAGGCCAGATACCTCCAGATTTACGAGA
GCCACTATAATAAGAGTCAGGAGCCCCGGCACCTTGAAATCAGGGATACC
AAGAAAAGTCTACCGTCGGTGGTTCCCATGATGTCCGGGGTGACTGCTCG
GATTTGTGCTGTTACCGTGGTGAGTCCCATCGAGCTGGTGAGACCAAGAT
GCAGGCCCAGCGCCAGACCTACGCCCAGATGCTGCAGTTCGTCCGGAGTG
TGGTGGCCCTTC

BO08047.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG2616-PA 1350 CG2616-RA 1..777 17..793 3885 100 Plus
CG2616-PA 1350 CG2616-RA 778..847 793..862 350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG2616-RB 1820 CG2616-RB 125..977 11..862 4225 99.8 Plus
CG2616-RA 1525 CG2616-RA 125..977 11..862 4225 99.8 Plus
Shawn-RE 3255 CG14209-RE 1998..2161 277..434 220 76.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7722541..7723224 11..694 3405 99.9 Plus
3R 32079331 3R 7723701..7723872 692..862 810 99.4 Plus
Blast to na_te.dros performed on 2015-02-13 15:37:28 has no hits.

BO08047.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:20 Download gff for BO08047.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2616-PA 1..847 17..862 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:25:57 Download gff for BO08047.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2616-PA 1..847 17..862 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:59:30 Download gff for BO08047.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2616-RA 120..977 3..862 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:17:13 Download gff for BO08047.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2616-RA 120..977 3..862 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:17:13 Download gff for BO08047.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7722536..7723223 3..693 99 -> Plus
3R 7723703..7723872 694..862 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:59:30 Download gff for BO08047.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3548258..3548945 3..693 99 -> Plus
arm_3R 3549425..3549594 694..862 99   Plus

BO08047.complete Sequence

1381 bp (1381 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631027

> BO08047.complete
GAAGTTATCAGTCGACATGTCGAAGGAAGACTCAGGCGCATCCAGTGCAG
AGGCGAATCCAGCTGAATCGGAAATTTCGATGGGTCGAGGACCCCGCCCA
AGGTCCTTTACTGGCGGCGGAGGCGGTGGCGGAACAGGTGGATCAGGTGG
AAGTGGTGGTACCTCCGGCGGCAACAATCTCAAGCCCGAAAGAAGCGCCC
GGGAAGATGACGCCATCAACCGTCTGACGGACTCGAAGTCGAGTCACCGA
AAGCTGCTCAGCGATCCGCGATTCCAGATTCGGCCGCTGCAGCAGGTAAT
CTCGGCCTGCACCGGGGCCATGATCACGGCCTGCTTCATGACGCCCCTGG
ACGTGATCAAGACTCGCATGCAGTCGCAGCAGTCGCCGGCCCACAAGTGC
TTCTTCTATTCGAACGGGCTGATGGACCACCTCTTCGCAAGTGGACCCAA
TGGCTCCGAGTTGGCGAGCCTGCGGCAAAGACCACAGTTTTCCAGCTCCT
GGGATGCTCTGATGAAAATCAGCCGGCACGAAGGATTGGCCGCTCTTTGG
TCCGGCCTGGGTCCCACCCTCGTCTCCGCCCTGCCCTCCACCATAATCTA
TTTCGTGGCCTATGAACAGTTCAAGGCCAGATACCTCCAGATTTACGAGA
GCCACTATAATAAGAGTCAGGAGCCCCGGCACCTTGAAATCAGGGATACC
AAGAAAAGTCTACCGTCGGTGGTTCCCATGATGTCCGGGGTGACTGCTCG
GATTTGTGCTGTTACCGTGGTGAGTCCCATCGAGCTGGTGAGAACCAAGA
TGCAGGCCCAGCGCCAGACCTACGCCCAGATGCTGCAGTTCGTCCGGAGT
GTGGTGGCCCTTCAGGGCGTGTGGGGCTTGTGGCGGGGCCTGCGTCCCAC
GATCCTCAGGGACGTGCCCTTTTCAGGGATTTACTGGCCCATCTATGAGA
GCCTAAAACAGAATCTCGGCCATGGCTCACAGCCCTCGTTCAGTCTGAGT
TTCTTGGCAGGCGTGATGGCAGGGACAGTGGCCGCCATTGTGACCACTCC
TTTCGACGTGGTCAAGACACATGAGCAGATTGAGTTTGGAGAAAGGGTCA
TCTTCACGGACTCGCCGGCGAGGGATTTTGGAAAGAAGTCGACCTTCAGC
AGACTAACGGGTATTTACAGGACACACGGCGTGCGGGGACTCTTCGCAGG
ATGCGGACCCAGGCTTCTGAAGGTGGCACCTGCCTGCGCCATTATGATCT
CCACCTTCGAGTACAGCAAGTCCTTCTTCTTCCATTACAACGTGAGGCAT
CATAACGAGGCCCTACTCCTGGACAACCCGAAAGACACGACGGTCGAAGA
TGATGACATTGAGGCAAGCTTTCTAGACCAT

BO08047.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:43:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG2616-RB 1350 CG2616-PB 1..1347 17..1363 6735 100 Plus
CG2616-RA 1350 CG2616-PA 1..1347 17..1363 6735 100 Plus
Tyler-RB 1326 CG14208-PB 1228..1286 1232..1290 220 91.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:43:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG2616-RB 1820 CG2616-RB 125..1477 11..1363 6750 99.9 Plus
CG2616-RA 1525 CG2616-RA 125..1477 11..1363 6750 99.9 Plus
Shawn-RE 3255 CG14209-RE 1469..1527 1232..1290 220 91.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:42:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7722541..7723224 11..694 3405 99.9 Plus
3R 32079331 3R 7723701..7724372 692..1363 3360 100 Plus
X 23542271 X 19613229..19613287 1232..1290 220 91.5 Plus
Blast to na_te.dros performed on 2014-11-27 19:42:59 has no hits.

BO08047.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:37 Download gff for BO08047.complete
Subject Subject Range Query Range Percent Splice Strand
CG2616-RA 1..1350 17..1364 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:53 Download gff for BO08047.complete
Subject Subject Range Query Range Percent Splice Strand
CG2616-RA 120..1477 3..1363 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:25 Download gff for BO08047.complete
Subject Subject Range Query Range Percent Splice Strand
CG2616-RA 131..1477 17..1365 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:38 Download gff for BO08047.complete
Subject Subject Range Query Range Percent Splice Strand
CG2616-RA 120..1477 3..1363 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:57 Download gff for BO08047.complete
Subject Subject Range Query Range Percent Splice Strand
CG2616-RA 131..1477 17..1365 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:57 Download gff for BO08047.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7722547..7723223 17..693 100 -> Plus
3R 7723703..7724372 694..1365 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:25 Download gff for BO08047.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3548269..3548945 17..693 100 -> Plus
arm_3R 3549425..3550094 694..1365 99   Plus

BO08047.pep Sequence

Translation from 16 to 1381

> BO08047.pep
MSKEDSGASSAEANPAESEISMGRGPRPRSFTGGGGGGGTGGSGGSGGTS
GGNNLKPERSAREDDAINRLTDSKSSHRKLLSDPRFQIRPLQQVISACTG
AMITACFMTPLDVIKTRMQSQQSPAHKCFFYSNGLMDHLFASGPNGSELA
SLRQRPQFSSSWDALMKISRHEGLAALWSGLGPTLVSALPSTIIYFVAYE
QFKARYLQIYESHYNKSQEPRHLEIRDTKKSLPSVVPMMSGVTARICAVT
VVSPIELVRTKMQAQRQTYAQMLQFVRSVVALQGVWGLWRGLRPTILRDV
PFSGIYWPIYESLKQNLGHGSQPSFSLSFLAGVMAGTVAAIVTTPFDVVK
THEQIEFGERVIFTDSPARDFGKKSTFSRLTGIYRTHGVRGLFAGCGPRL
LKVAPACAIMISTFEYSKSFFFHYNVRHHNEALLLDNPKDTTVEDDDIEA
SFLDH

BO08047.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG2616-PB 449 CG2616-PB 1..449 1..449 2336 100 Plus
CG2616-PA 449 CG2616-PA 1..449 1..449 2336 100 Plus
Shawn-PE 387 CG14209-PE 22..378 73..432 1122 60.2 Plus
Shawn-PD 387 CG14209-PD 22..378 73..432 1122 60.2 Plus
Shawn-PC 387 CG14209-PC 22..378 73..432 1122 60.2 Plus