Clone Sequence Records
BO08048.5prime Sequence
575 bp (574 high quality bases) assembled on 2006-01-06
> BO08048.5prime
GAAGTTATCAGTCGACATGCGTCTTGTCCGCAGTAAATGTTGTCAACGTG
ATGTTTCTGTAACCGACTATCTGAACACCCCGCATCCGCACCAGCACCAT
CCATCGTCCACCGACGTCCAGCACACCAAAAACATATTTACACGCTACTG
GGACGACCACATAAGAATGAAGGAATCGAGCGAGGGCAAAACCAGGGCCA
AGGCCCCATCCGCTGCCGCATCCGCATCCACCACACCATCGTCATCTTCA
GCACCTGCCAAACAAACCCAGAGCGTTACGTTCGTGAGGACCAGTAATGC
ACCAGCTGTTTGCGACGCCAACGGGAACGGGAATGGGTGCTCCATCCAAA
CGGAGTGGACATTCCCCCCAAAGGCGCCCACACCGCACATCTACAATTGC
CTGAGTCCGGACATGATGGCCTCAAGTGATAAGAGCAGCTTTAAGGGATT
TCGCAAGCAATTCAGTGGACGGTTCAAGCGCCTAGTTACTCGAAAAGTGG
AACACACTCCAGTGATACCTCCAGAATTGAAGCCGCAACTAAAAACAATA
TACGTTTACGCAAGCTTTCTAGACC
BO08048.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11791-PA | 546 | CG11791-RA | 1..543 | 17..559 | 2715 | 100 | Plus |
CG11791-PB | 396 | CG11791-RB | 1..393 | 167..559 | 1965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:40:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11791-RA | 1906 | CG11791-RA | 922..1464 | 17..559 | 2715 | 100 | Plus |
CG11791-RB | 1299 | CG11791-RB | 331..857 | 33..559 | 2635 | 100 | Plus |
CG11791-RD | 1721 | CG11791-RD | 754..1279 | 34..559 | 2630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:40:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25051164..25051557 | 17..410 | 1970 | 100 | Plus |
3R | 32079331 | 3R | 25052482..25052632 | 409..559 | 755 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:40:03 has no hits.
BO08048.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:22 Download gff for
BO08048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11791-PA | 1..546 | 17..563 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:25:59 Download gff for
BO08048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11791-PA | 1..546 | 17..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:06:10 Download gff for
BO08048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11791-RA | 922..1470 | 17..567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:56:07 Download gff for
BO08048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11791-RA | 922..1470 | 17..567 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:56:07 Download gff for
BO08048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25051164..25051556 | 17..409 | 100 | -> | Plus |
3R | 25052483..25052626 | 410..553 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:06:10 Download gff for
BO08048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20876886..20877278 | 17..409 | 100 | -> | Plus |
arm_3R | 20878205..20878348 | 410..553 | 100 | -> | Plus |
BO08048.3prime Sequence
575 bp (574 high quality bases) assembled on 2006-01-06
> BO08048.3prime
ATGGTCTAGAAAGCTTGCGTAAACGTATATTGTTTTTAGTTGCGGCTTCA
ATTCTGGAGGTATCACTGGAGTGTGTTCCACTTTTCGAGTAACTAGGCGC
TTGAACCGTCCACTGAATTGCTTGCGAAATCCCTTAAAGCTGCTCTTATC
ACTTGAGGCCATCATGTCCGGACTCAGGCAATTGTAGATGTGCGGTGTGG
GCGCCTTTGGGGGGAATGTCCACTCCGTTTGGATGGAGCACCCATTCCCG
TTCCCGTTGGCGTCGCAAACAGCTGGTGCATTACTGGTCCTCACGAACGT
AACGCTCTGGGTTTGTTTGGCAGGTGCTGAAGATGACGATGGTGTGGTGG
ATGCGGATGCGGCAGCGGATGGGGCCTTGGCCCTGGTTTTGCCCTCGCTC
GATTCCTTCATTCTTATGTGGTCGTCCCAGTAGCGTGTAAATATGTTTTT
GGTGTGCTGGACGTCGGTGGACGATGGATGGTGCTGGTGCGGATGCGGGG
TGTTCAGATAGTCGGTTACAGAAACATCACGTTGACAACATTTACTGCGG
ACAAGACGCATGTCGACTGATAACT
BO08048.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11791-PA | 546 | CG11791-RA | 1..543 | 561..19 | 2715 | 100 | Minus |
CG11791-PB | 396 | CG11791-RB | 1..393 | 411..19 | 1965 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:09:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11791-RA | 1906 | CG11791-RA | 922..1464 | 561..19 | 2715 | 100 | Minus |
CG11791-RB | 1299 | CG11791-RB | 331..857 | 545..19 | 2635 | 100 | Minus |
CG11791-RD | 1721 | CG11791-RD | 754..1279 | 544..19 | 2630 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:09:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25051164..25051557 | 561..168 | 1970 | 100 | Minus |
3R | 32079331 | 3R | 25052482..25052632 | 169..19 | 755 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:09:48 has no hits.
BO08048.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:21 Download gff for
BO08048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11791-PA | 1..546 | 15..561 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:25:58 Download gff for
BO08048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11791-PA | 1..546 | 15..561 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:47:20 Download gff for
BO08048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11791-RA | 922..1470 | 11..561 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:09:55 Download gff for
BO08048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11791-RA | 922..1470 | 11..561 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:09:55 Download gff for
BO08048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25051164..25051556 | 169..561 | 100 | -> | Minus |
3R | 25052483..25052626 | 25..168 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:47:20 Download gff for
BO08048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20876886..20877278 | 169..561 | 100 | -> | Minus |
arm_3R | 20878205..20878348 | 25..168 | 100 | -> | Minus |
BO08048.complete Sequence
577 bp (577 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631028
> BO08048.complete
GAAGTTATCAGTCGACATGCGTCTTGTCCGCAGTAAATGTTGTCAACGTG
ATGTTTCTGTAACCGACTATCTGAACACCCCGCATCCGCACCAGCACCAT
CCATCGTCCACCGACGTCCAGCACACCAAAAACATATTTACACGCTACTG
GGACGACCACATAAGAATGAAGGAATCGAGCGAGGGCAAAACCAGGGCCA
AGGCCCCATCCGCTGCCGCATCCGCATCCACCACACCATCGTCATCTTCA
GCACCTGCCAAACAAACCCAGAGCGTTACGTTCGTGAGGACCAGTAATGC
ACCAGCTGTTTGCGACGCCAACGGGAACGGGAATGGGTGCTCCATCCAAA
CGGAGTGGACATTCCCCCCAAAGGCGCCCACACCGCACATCTACAATTGC
CTGAGTCCGGACATGATGGCCTCAAGTGATAAGAGCAGCTTTAAGGGATT
TCGCAAGCAATTCAGTGGACGGTTCAAGCGCCTAGTTACTCGAAAAGTGG
AACACACTCCAGTGATACCTCCAGAATTGAAGCCGCAACTAAAAACAATA
TACGTTTACGCAAGCTTTCTAGACCAT
BO08048.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:17:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11791-RA | 546 | CG11791-PA | 1..543 | 17..559 | 2715 | 100 | Plus |
CG11791-RD | 396 | CG11791-PD | 1..393 | 167..559 | 1965 | 100 | Plus |
CG11791-RC | 396 | CG11791-PC | 1..393 | 167..559 | 1965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11791-RA | 1906 | CG11791-RA | 922..1464 | 17..559 | 2715 | 100 | Plus |
CG11791-RB | 1299 | CG11791-RB | 331..857 | 33..559 | 2635 | 100 | Plus |
CG11791-RD | 1721 | CG11791-RD | 754..1279 | 34..559 | 2630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25051164..25051557 | 17..410 | 1970 | 100 | Plus |
3R | 32079331 | 3R | 25052482..25052632 | 409..559 | 755 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:17:25 has no hits.
BO08048.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:40 Download gff for
BO08048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11791-RA | 1..546 | 17..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:47 Download gff for
BO08048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11791-RA | 829..1377 | 17..567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:57:01 Download gff for
BO08048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11791-RA | 922..1464 | 17..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:40 Download gff for
BO08048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11791-RA | 829..1377 | 17..567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:39 Download gff for
BO08048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11791-RA | 922..1464 | 17..561 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:15:39 Download gff for
BO08048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25051164..25051556 | 17..409 | 100 | -> | Plus |
3R | 25052483..25052632 | 410..561 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:57:01 Download gff for
BO08048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20876886..20877278 | 17..409 | 100 | -> | Plus |
arm_3R | 20878205..20878354 | 410..561 | 98 | | Plus |
BO08048.pep Sequence
Translation from 16 to 577
> BO08048.pep
MRLVRSKCCQRDVSVTDYLNTPHPHQHHPSSTDVQHTKNIFTRYWDDHIR
MKESSEGKTRAKAPSAAASASTTPSSSSAPAKQTQSVTFVRTSNAPAVCD
ANGNGNGCSIQTEWTFPPKAPTPHIYNCLSPDMMASSDKSSFKGFRKQFS
GRFKRLVTRKVEHTPVIPPELKPQLKTIYVYASFLDH
BO08048.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11791-PA | 181 | CG11791-PA | 1..181 | 1..181 | 973 | 100 | Plus |
CG11791-PD | 131 | CG11791-PD | 1..131 | 51..181 | 685 | 100 | Plus |
CG11791-PC | 131 | CG11791-PC | 1..131 | 51..181 | 685 | 100 | Plus |
CG11791-PB | 131 | CG11791-PB | 1..131 | 51..181 | 685 | 100 | Plus |