Clone BO08048 Report

Search the DGRC for BO08048

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:80
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG11791-RA
Protein status:BO08048.pep: validated full length
Sequenced Size:577

Clone Sequence Records

BO08048.5prime Sequence

575 bp (574 high quality bases) assembled on 2006-01-06

> BO08048.5prime
GAAGTTATCAGTCGACATGCGTCTTGTCCGCAGTAAATGTTGTCAACGTG
ATGTTTCTGTAACCGACTATCTGAACACCCCGCATCCGCACCAGCACCAT
CCATCGTCCACCGACGTCCAGCACACCAAAAACATATTTACACGCTACTG
GGACGACCACATAAGAATGAAGGAATCGAGCGAGGGCAAAACCAGGGCCA
AGGCCCCATCCGCTGCCGCATCCGCATCCACCACACCATCGTCATCTTCA
GCACCTGCCAAACAAACCCAGAGCGTTACGTTCGTGAGGACCAGTAATGC
ACCAGCTGTTTGCGACGCCAACGGGAACGGGAATGGGTGCTCCATCCAAA
CGGAGTGGACATTCCCCCCAAAGGCGCCCACACCGCACATCTACAATTGC
CTGAGTCCGGACATGATGGCCTCAAGTGATAAGAGCAGCTTTAAGGGATT
TCGCAAGCAATTCAGTGGACGGTTCAAGCGCCTAGTTACTCGAAAAGTGG
AACACACTCCAGTGATACCTCCAGAATTGAAGCCGCAACTAAAAACAATA
TACGTTTACGCAAGCTTTCTAGACC

BO08048.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG11791-PA 546 CG11791-RA 1..543 17..559 2715 100 Plus
CG11791-PB 396 CG11791-RB 1..393 167..559 1965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:40:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG11791-RA 1906 CG11791-RA 922..1464 17..559 2715 100 Plus
CG11791-RB 1299 CG11791-RB 331..857 33..559 2635 100 Plus
CG11791-RD 1721 CG11791-RD 754..1279 34..559 2630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25051164..25051557 17..410 1970 100 Plus
3R 32079331 3R 25052482..25052632 409..559 755 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:40:03 has no hits.

BO08048.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:22 Download gff for BO08048.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11791-PA 1..546 17..563 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:25:59 Download gff for BO08048.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11791-PA 1..546 17..563 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:06:10 Download gff for BO08048.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11791-RA 922..1470 17..567 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:56:07 Download gff for BO08048.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11791-RA 922..1470 17..567 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:56:07 Download gff for BO08048.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25051164..25051556 17..409 100 -> Plus
3R 25052483..25052626 410..553 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:06:10 Download gff for BO08048.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20876886..20877278 17..409 100 -> Plus
arm_3R 20878205..20878348 410..553 100 -> Plus

BO08048.3prime Sequence

575 bp (574 high quality bases) assembled on 2006-01-06

> BO08048.3prime
ATGGTCTAGAAAGCTTGCGTAAACGTATATTGTTTTTAGTTGCGGCTTCA
ATTCTGGAGGTATCACTGGAGTGTGTTCCACTTTTCGAGTAACTAGGCGC
TTGAACCGTCCACTGAATTGCTTGCGAAATCCCTTAAAGCTGCTCTTATC
ACTTGAGGCCATCATGTCCGGACTCAGGCAATTGTAGATGTGCGGTGTGG
GCGCCTTTGGGGGGAATGTCCACTCCGTTTGGATGGAGCACCCATTCCCG
TTCCCGTTGGCGTCGCAAACAGCTGGTGCATTACTGGTCCTCACGAACGT
AACGCTCTGGGTTTGTTTGGCAGGTGCTGAAGATGACGATGGTGTGGTGG
ATGCGGATGCGGCAGCGGATGGGGCCTTGGCCCTGGTTTTGCCCTCGCTC
GATTCCTTCATTCTTATGTGGTCGTCCCAGTAGCGTGTAAATATGTTTTT
GGTGTGCTGGACGTCGGTGGACGATGGATGGTGCTGGTGCGGATGCGGGG
TGTTCAGATAGTCGGTTACAGAAACATCACGTTGACAACATTTACTGCGG
ACAAGACGCATGTCGACTGATAACT

BO08048.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG11791-PA 546 CG11791-RA 1..543 561..19 2715 100 Minus
CG11791-PB 396 CG11791-RB 1..393 411..19 1965 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:09:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG11791-RA 1906 CG11791-RA 922..1464 561..19 2715 100 Minus
CG11791-RB 1299 CG11791-RB 331..857 545..19 2635 100 Minus
CG11791-RD 1721 CG11791-RD 754..1279 544..19 2630 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:09:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25051164..25051557 561..168 1970 100 Minus
3R 32079331 3R 25052482..25052632 169..19 755 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:09:48 has no hits.

BO08048.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:21 Download gff for BO08048.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11791-PA 1..546 15..561 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:25:58 Download gff for BO08048.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11791-PA 1..546 15..561 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:47:20 Download gff for BO08048.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11791-RA 922..1470 11..561 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:09:55 Download gff for BO08048.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11791-RA 922..1470 11..561 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:09:55 Download gff for BO08048.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25051164..25051556 169..561 100 -> Minus
3R 25052483..25052626 25..168 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:47:20 Download gff for BO08048.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20876886..20877278 169..561 100 -> Minus
arm_3R 20878205..20878348 25..168 100 -> Minus

BO08048.complete Sequence

577 bp (577 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631028

> BO08048.complete
GAAGTTATCAGTCGACATGCGTCTTGTCCGCAGTAAATGTTGTCAACGTG
ATGTTTCTGTAACCGACTATCTGAACACCCCGCATCCGCACCAGCACCAT
CCATCGTCCACCGACGTCCAGCACACCAAAAACATATTTACACGCTACTG
GGACGACCACATAAGAATGAAGGAATCGAGCGAGGGCAAAACCAGGGCCA
AGGCCCCATCCGCTGCCGCATCCGCATCCACCACACCATCGTCATCTTCA
GCACCTGCCAAACAAACCCAGAGCGTTACGTTCGTGAGGACCAGTAATGC
ACCAGCTGTTTGCGACGCCAACGGGAACGGGAATGGGTGCTCCATCCAAA
CGGAGTGGACATTCCCCCCAAAGGCGCCCACACCGCACATCTACAATTGC
CTGAGTCCGGACATGATGGCCTCAAGTGATAAGAGCAGCTTTAAGGGATT
TCGCAAGCAATTCAGTGGACGGTTCAAGCGCCTAGTTACTCGAAAAGTGG
AACACACTCCAGTGATACCTCCAGAATTGAAGCCGCAACTAAAAACAATA
TACGTTTACGCAAGCTTTCTAGACCAT

BO08048.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG11791-RA 546 CG11791-PA 1..543 17..559 2715 100 Plus
CG11791-RD 396 CG11791-PD 1..393 167..559 1965 100 Plus
CG11791-RC 396 CG11791-PC 1..393 167..559 1965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG11791-RA 1906 CG11791-RA 922..1464 17..559 2715 100 Plus
CG11791-RB 1299 CG11791-RB 331..857 33..559 2635 100 Plus
CG11791-RD 1721 CG11791-RD 754..1279 34..559 2630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25051164..25051557 17..410 1970 100 Plus
3R 32079331 3R 25052482..25052632 409..559 755 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:17:25 has no hits.

BO08048.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:40 Download gff for BO08048.complete
Subject Subject Range Query Range Percent Splice Strand
CG11791-RA 1..546 17..563 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:47 Download gff for BO08048.complete
Subject Subject Range Query Range Percent Splice Strand
CG11791-RA 829..1377 17..567 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:57:01 Download gff for BO08048.complete
Subject Subject Range Query Range Percent Splice Strand
CG11791-RA 922..1464 17..561 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:40 Download gff for BO08048.complete
Subject Subject Range Query Range Percent Splice Strand
CG11791-RA 829..1377 17..567 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:39 Download gff for BO08048.complete
Subject Subject Range Query Range Percent Splice Strand
CG11791-RA 922..1464 17..561 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:15:39 Download gff for BO08048.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25051164..25051556 17..409 100 -> Plus
3R 25052483..25052632 410..561 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:57:01 Download gff for BO08048.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20876886..20877278 17..409 100 -> Plus
arm_3R 20878205..20878354 410..561 98   Plus

BO08048.pep Sequence

Translation from 16 to 577

> BO08048.pep
MRLVRSKCCQRDVSVTDYLNTPHPHQHHPSSTDVQHTKNIFTRYWDDHIR
MKESSEGKTRAKAPSAAASASTTPSSSSAPAKQTQSVTFVRTSNAPAVCD
ANGNGNGCSIQTEWTFPPKAPTPHIYNCLSPDMMASSDKSSFKGFRKQFS
GRFKRLVTRKVEHTPVIPPELKPQLKTIYVYASFLDH

BO08048.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11791-PA 181 CG11791-PA 1..181 1..181 973 100 Plus
CG11791-PD 131 CG11791-PD 1..131 51..181 685 100 Plus
CG11791-PC 131 CG11791-PC 1..131 51..181 685 100 Plus
CG11791-PB 131 CG11791-PB 1..131 51..181 685 100 Plus