Clone Sequence Records
BO08052.3prime Sequence
899 bp (864 high quality bases) assembled on 2006-01-06
> BO08052.3prime
ATGGTCTAGAAAGCTTGCGTATTCGCCATTTCCGTACTGCTGGATTTTCA
ACAGGTCGCAGGAGAACTGGAAAAGCTGCTCGCACTTTGCCGGCTTCTTG
GCATCCGGATGGAAAGGACCCTTTCCGCCGTTGGAGAGGTAAGTACCACC
CTGACCCTCGATGGAGGGATCAATGGCCGCGAAGACCACCGTGCGGGATC
CCCTTTCCGGAGTCTTGAAGAATAGCTTCTTGAAAATGGGCACCGATGTG
GTGGCCGAGTGCTCGAACAGATCCGTGTCCACAATGCCCGGATGCACCAC
ATTGACCTGCACGTGCGACTTTTCTGCATCCAGCAGTGTCTGCAGATGGC
GGGTGAACAAGATCTGAGCAAGCTTTGACTGACTGTAGGCGGTTCCCGGG
TAATAGTGTTTTGTTCCGTTAATGTCCTTATAGTTGATGCGTCCAATGAG
ATTCACGCAGGAGCTGACGTTCACGATCCTGGAGTTCCTTCCCTCCTTGC
CTGCCGCCCTCAATTGAGGCAGAAGCAGGTGGGTGAGCAGAAAGTGTCCC
AGGAAGTTGATGGCAAAGTGCGACTCGTAGCCATCGGCGGTTAGTTTGAA
GGGCGCAAACATGATGCCAGCATTGTTCAGCAACAAATCCACTTTTGAAT
ACCGCTCCTTGATGAGCTGAGCAAATGCCTTTACGGATTTCAGATCCCCA
ACATCCAGTTGCTCGCAGATGAGCTTGCCCTTGGTAGCATTCAAGTCGAC
TATCGATGCAACTGCGGTTTCGGCAATTTTGGGATCACGAACGCCCATGA
CGACAGTCATGTCGCAGGCCAGCAGCTTCTCCACGATCCGCAGTCCGATG
CCGCGATTGCCTCCGGTGATGACAGCAATGCGGTCCGGGTGTTTATAAA
BO08052.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11200-PB | 1068 | CG11200-RB | 185..1065 | 899..19 | 4380 | 99.8 | Minus |
| CG11200-PA | 1068 | CG11200-RA | 185..1065 | 899..19 | 4380 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:54:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11200-RC | 1335 | CG11200-RC | 337..1217 | 899..19 | 4390 | 99.9 | Minus |
| CG11200-RA | 1447 | CG11200-RA | 449..1329 | 899..19 | 4390 | 99.9 | Minus |
| CG11200-RB | 1688 | CG11200-RB | 690..1570 | 899..19 | 4390 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:53:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20304635..20305028 | 19..412 | 1970 | 100 | Plus |
| 2R | 25286936 | 2R | 20305086..20305468 | 413..795 | 1915 | 100 | Plus |
| 2R | 25286936 | 2R | 20306243..20306348 | 794..899 | 515 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:53:55 has no hits.
BO08052.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:30 Download gff for
BO08052.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11200-PB | 188..1068 | 15..896 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:09 Download gff for
BO08052.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11200-PA | 188..1068 | 15..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:45:39 Download gff for
BO08052.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11200-RB | 693..1573 | 15..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:33 Download gff for
BO08052.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11200-RB | 693..1573 | 15..896 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:33 Download gff for
BO08052.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20304631..20305028 | 15..412 | 99 | <- | Plus |
| 2R | 20305086..20305467 | 413..794 | 100 | <- | Plus |
| 2R | 20306244..20306345 | 795..896 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:45:39 Download gff for
BO08052.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16192136..16192533 | 15..412 | 99 | <- | Plus |
| arm_2R | 16192591..16192972 | 413..794 | 100 | <- | Plus |
| arm_2R | 16193749..16193850 | 795..896 | 99 | | Plus |
BO08052.5prime Sequence
867 bp (845 high quality bases) assembled on 2006-01-06
> BO08052.5prime
GAAGTTATCAGTCGACATGTTGGGAACTTTGCTGTGGATTTTCTTCGTCG
GCCTGCTGCTGTGTGCGTTCCTCTTTTCGAAGACCACCAAGGAGTTCCCG
AAGTCCTGGTTCGAGTGGAAGACTGAGTTTCGGTATCAGTACCTGGGAAT
CGTTGGGCTCGTCCACGATGCCCAGTATAAGGCACGGGATCGAGTGGCAC
TTTATAAACAACCGGACCGCATTGCTGTCATCACCGGAGGCAATCGCGGC
ATCGGACTGCGGATCGTGGAGAAGCTGCTGGCCTGCGACATGACTGTCGT
CATGGGCGTTCGTGATCCCAAAATTGCCGAAACCGCAGTTGCATCGATAG
TCGACTTGAATGCTACCAAGGGCAAGCTCATCTGCGAGCAACTGGATGTT
GGGGATCTGAAATCCGTAAAGGCATTTGCTCAGCTCATCAAGGAGCGGTA
TTCAAAAGTGGATTTGTTGCTGAACAATGCTGGCATCATGTTTGCGCCCT
TCAAACTAACCGCCGATGGCTACGAGTCGCACTTTGCCATCAACTTCCTG
GGACACTTTCTGCTCACCCACCTGCTTCTGCCTCAATTGAGGGCGGCAGG
CAAGGAGGGAAGGAACTCCAGGATCGTGAACGTCAGCTCCTGCGTGAATC
TCATTGGACGCATCAACTATAAGGACATTAACGGAACAAAACACTATTAC
CCGGGAACCGCCTACAGTCAGTCAAAGCTTGCTCAGATCTTGTTCACCCG
CCATCTGCAGACACTGCTGGATGCAGAAAAGTCGCACGTGCAGGTCAATG
TGGTGCATCCGGGCATTGTGGACACGGATCTGTTCGAGCACTCGGCCACC
ACATCGGTGCCCATTTT
BO08052.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11200-PB | 1068 | CG11200-RB | 1..851 | 17..867 | 4255 | 100 | Plus |
| CG11200-PA | 1068 | CG11200-RA | 1..851 | 17..867 | 4255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:06:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11200-RC | 1335 | CG11200-RC | 153..1003 | 17..867 | 4255 | 100 | Plus |
| CG11200-RA | 1447 | CG11200-RA | 265..1115 | 17..867 | 4255 | 100 | Plus |
| CG11200-RB | 1688 | CG11200-RB | 506..1356 | 17..867 | 4255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:06:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20305086..20305468 | 687..305 | 1915 | 100 | Minus |
| 2R | 25286936 | 2R | 20306415..20306595 | 197..17 | 905 | 100 | Minus |
| 2R | 25286936 | 2R | 20304849..20305028 | 867..688 | 900 | 100 | Minus |
| 2R | 25286936 | 2R | 20306243..20306352 | 306..197 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:06:06 has no hits.
BO08052.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:30 Download gff for
BO08052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11200-PB | 1..851 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:10 Download gff for
BO08052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11200-PA | 1..851 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:47:18 Download gff for
BO08052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11200-RB | 501..1356 | 11..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:03:24 Download gff for
BO08052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11200-RB | 501..1356 | 11..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:03:24 Download gff for
BO08052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20304849..20305028 | 688..867 | 100 | <- | Minus |
| 2R | 20305086..20305467 | 306..687 | 100 | <- | Minus |
| 2R | 20306244..20306351 | 198..305 | 100 | <- | Minus |
| 2R | 20306415..20306600 | 11..197 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:47:18 Download gff for
BO08052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16192354..16192533 | 688..867 | 100 | <- | Minus |
| arm_2R | 16192591..16192972 | 306..687 | 100 | <- | Minus |
| arm_2R | 16193749..16193856 | 198..305 | 100 | <- | Minus |
| arm_2R | 16193920..16194105 | 11..197 | 98 | | Minus |
BO08052.complete Sequence
1099 bp (1099 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631029
> BO08052.complete
GAAGTTATCAGTCGACATGTTGGGAACTTTGCTGTGGATTTTCTTCGTCG
GCCTGCTGCTGTGTGCGTTCCTCTTTTCGAAGACCACCAAGGAGTTCCCG
AAGTCCTGGTTCGAGTGGAAGACTGAGTTTCGGTATCAGTACCTGGGAAT
CGTTGGGCTCGTCCACGATGCCCAGTATAAGGCACGGGATCGAGTGGCAC
TTTATAAACAACCGGACCGCATTGCTGTCATCACCGGAGGCAATCGCGGC
ATCGGACTGCGGATCGTGGAGAAGCTGCTGGCCTGCGACATGACTGTCGT
CATGGGCGTTCGTGATCCCAAAATTGCCGAAACCGCAGTTGCATCGATAG
TCGACTTGAATGCTACCAAGGGCAAGCTCATCTGCGAGCAACTGGATGTT
GGGGATCTGAAATCCGTAAAGGCATTTGCTCAGCTCATCAAGGAGCGGTA
TTCAAAAGTGGATTTGTTGCTGAACAATGCTGGCATCATGTTTGCGCCCT
TCAAACTAACCGCCGATGGCTACGAGTCGCACTTTGCCATCAACTTCCTG
GGACACTTTCTGCTCACCCACCTGCTTCTGCCTCAATTGAGGGCGGCAGG
CAAGGAGGGAAGGAACTCCAGGATCGTGAACGTCAGCTCCTGCGTGAATC
TCATTGGACGCATCAACTATAAGGACATTAACGGAACAAAACACTATTAC
CCGGGAACCGCCTACAGTCAGTCAAAGCTTGCTCAGATCTTGTTCACCCG
CCATCTGCAGACACTGCTGGATGCAGAAAAGTCGCACGTGCAGGTCAATG
TGGTGCATCCGGGCATTGTGGACACGGATCTGTTCGAGCACTCGGCCACC
ACATCGGTGCCCATTTTCAAGAAGCTATTCTTCAAGACTCCGGAAAGGGG
ATCCCGCACGGTGGTCTTCGCGGCCATTGATCCCTCCATCGAGGGTCAGG
GTGGTACTTACCTCTCCAACGGCGGAAAGGGTCCTTTCCATCCGGATGCC
AAGAAGCCGGCAAAGTGCGAGCAGCTTTTCCAGTTCTCCTGCGACCTGTT
GAAAATCCAGCAGTACGGAAATGGCGAATACGCAAGCTTTCTAGACCAT
BO08052.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:46:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11200-RC | 1068 | CG11200-PC | 1..1065 | 17..1081 | 5325 | 100 | Plus |
| CG11200-RA | 1068 | CG11200-PA | 1..1065 | 17..1081 | 5325 | 100 | Plus |
| CG11200-RB | 1068 | CG11200-PB | 1..1065 | 17..1081 | 5325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:46:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11200-RC | 1335 | CG11200-RC | 153..1217 | 17..1081 | 5325 | 100 | Plus |
| CG11200-RA | 1447 | CG11200-RA | 265..1329 | 17..1081 | 5325 | 100 | Plus |
| CG11200-RB | 1688 | CG11200-RB | 506..1570 | 17..1081 | 5325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:46:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20304635..20305028 | 1081..688 | 1970 | 100 | Minus |
| 2R | 25286936 | 2R | 20305086..20305468 | 687..305 | 1915 | 100 | Minus |
| 2R | 25286936 | 2R | 20306415..20306595 | 197..17 | 905 | 100 | Minus |
| 2R | 25286936 | 2R | 20306243..20306352 | 306..197 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:46:52 has no hits.
BO08052.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:39 Download gff for
BO08052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11200-RA | 1..1068 | 17..1085 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:54 Download gff for
BO08052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11200-RA | 530..1602 | 11..1085 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:32:51 Download gff for
BO08052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11200-RB | 511..1570 | 22..1083 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:39 Download gff for
BO08052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11200-RA | 530..1602 | 11..1085 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:21 Download gff for
BO08052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11200-RB | 511..1570 | 22..1083 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:21 Download gff for
BO08052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20306415..20306590 | 22..197 | 100 | | Minus |
| 2R | 20304633..20305028 | 688..1083 | 99 | <- | Minus |
| 2R | 20305086..20305467 | 306..687 | 100 | <- | Minus |
| 2R | 20306244..20306351 | 198..305 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:32:51 Download gff for
BO08052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16192138..16192533 | 688..1083 | 99 | <- | Minus |
| arm_2R | 16192591..16192972 | 306..687 | 100 | <- | Minus |
| arm_2R | 16193749..16193856 | 198..305 | 100 | <- | Minus |
| arm_2R | 16193920..16194095 | 22..197 | 100 | | Minus |
BO08052.pep Sequence
Translation from 16 to 1099
> BO08052.pep
MLGTLLWIFFVGLLLCAFLFSKTTKEFPKSWFEWKTEFRYQYLGIVGLVH
DAQYKARDRVALYKQPDRIAVITGGNRGIGLRIVEKLLACDMTVVMGVRD
PKIAETAVASIVDLNATKGKLICEQLDVGDLKSVKAFAQLIKERYSKVDL
LLNNAGIMFAPFKLTADGYESHFAINFLGHFLLTHLLLPQLRAAGKEGRN
SRIVNVSSCVNLIGRINYKDINGTKHYYPGTAYSQSKLAQILFTRHLQTL
LDAEKSHVQVNVVHPGIVDTDLFEHSATTSVPIFKKLFFKTPERGSRTVV
FAAIDPSIEGQGGTYLSNGGKGPFHPDAKKPAKCEQLFQFSCDLLKIQQY
GNGEYASFLDH
BO08052.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11200-PC | 355 | CG11200-PC | 1..355 | 1..355 | 1848 | 100 | Plus |
| CG11200-PA | 355 | CG11200-PA | 1..355 | 1..355 | 1848 | 100 | Plus |
| CG11200-PB | 355 | CG11200-PB | 1..355 | 1..355 | 1848 | 100 | Plus |
| CG3842-PD | 406 | CG3842-PD | 75..351 | 68..345 | 463 | 40.8 | Plus |
| CG3842-PC | 406 | CG3842-PC | 75..351 | 68..345 | 463 | 40.8 | Plus |
