Clone Sequence Records
BO08054.3prime Sequence
686 bp (685 high quality bases) assembled on 2006-01-06
> BO08054.3prime
ATGGTCTAGAAAGCTTGCTGTCTGCACGGGCACATTGCTATCGGCCTCCT
GCAGAACGGGCGCTGTCCAGACGCCGCTTCCGCTGCGCGTCTTCCGCTGC
TGGACGATGCCATCCATGATGTCCAGCTGCAAGTTGTGCACGCTGCCGCG
GTGATCGGTTAATGGCGGTCCGGCGATGACGCTGCCACGGCGACTGCCAC
TGAAGGATACACCGGAAATGGACTCGCGGCGATTGCGTCCGAAAAGCGTT
GGCGGCACCGCCGATATGGTGACCACCGAGTGCCTACGTCCACCGGCCGT
CGGATTGGCCTTCTGCGAGAGCGTGGCCAGAAACTCGACCTCCTTGGGAC
TGAGCCCGCCAGTCTCGCCGCCCACCTCCGACAATCGACGCACCTGACTG
GCGGTGATGCCCTCGGTAATTTGAAGCGATGGCAGCGAATGCTTGCGTCG
CTGTTGCATATCGGGAAATGGGCAAAGCAGATAGGGATTCACCGGCGAGT
CCGGTTCGGAGTCATCGCTGTTGGAACGGCGTGTCCCGGCCGCAGTGGGA
TCACATCCACCGGCGGCACCCTCCAAGTCATCACCATCCTCGGCGGTGTG
CGATTCCTCCACCACGATCAGCGGCTCCTGGGTGCTCAAGTTGAAGACGG
GCGTGAACGAGGAGCGACGCATGTCGACTGATAACT
BO08054.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32700-PA | 657 | CG32700-RA | 1..654 | 672..19 | 3270 | 100 | Minus |
CG32700-PB | 657 | CG32700-RB | 1..654 | 672..19 | 3270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:13:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32700-RB | 4208 | CG32700-RB | 442..1095 | 672..19 | 3270 | 100 | Minus |
CG32700-RA | 1441 | CG32700-RA | 438..1091 | 672..19 | 3270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:12:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9510160..9510632 | 200..672 | 2365 | 100 | Plus |
X | 23542271 | X | 9507082..9507265 | 19..202 | 920 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:12:58 has no hits.
BO08054.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:33 Download gff for
BO08054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32700-PA | 1..657 | 15..672 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:14 Download gff for
BO08054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32700-PB | 1..657 | 15..672 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:10:31 Download gff for
BO08054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32700-RA | 430..1100 | 8..680 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:16:41 Download gff for
BO08054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32700-RA | 430..1100 | 8..680 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:16:41 Download gff for
BO08054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9510160..9510640 | 200..680 | 99 | | Plus |
X | 9507073..9507262 | 8..199 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:10:31 Download gff for
BO08054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9401106..9401295 | 8..199 | 97 | <- | Plus |
arm_X | 9404193..9404673 | 200..680 | 99 | | Plus |
BO08054.5prime Sequence
686 bp (685 high quality bases) assembled on 2006-01-06
> BO08054.5prime
GAAGTTATCAGTCGACATGCGTCGCTCCTCGTTCACGCCCGTCTTCAACT
TGAGCACCCAGGAGCCGCTGATCGTGGTGGAGGAATCGCACACCGCCGAG
GATGGTGATGACTTGGAGGGTGCCGCCGGTGGATGTGATCCCACTGCGGC
CGGGACACGCCGTTCCAACAGCGATGACTCCGAACCGGACTCGCCGGTGA
ATCCCTATCTGCTTTGCCCATTTCCCGATATGCAACAGCGACGCAAGCAT
TCGCTGCCATCGCTTCAAATTACCGAGGGCATCACCGCCAGTCAGGTGCG
TCGATTGTCGGAGGTGGGCGGCGAGACTGGCGGGCTCAGTCCCAAGGAGG
TCGAGTTTCTGGCCACGCTCTCGCAGAAGGCCAATCCGACGGCCGGTGGA
CGTAGGCACTCGGTGGTCACCATATCGGCGGTGCCGCCAACGCTTTTCGG
ACGCAATCGCCGCGAGTCCATTTCCGGTGTATCCTTCAGTGGCAGTCGCC
GTGGCAGCGTCATCGCCGGACCGCCATTAACCGATCACCGCGGCAGCGTG
CACAACTTGCAGCTGGACATCATGGATGGCATCGTCCAGCAGCGGAAGAC
GCGCAGCGGAAGCGGCGTCTGGACAGCGCCCGTTCTGCAGGAGGCCGATA
GCAATGTGCCCGTGCAGACAGCAAGCTTTCTAGACC
BO08054.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32700-PA | 657 | CG32700-RA | 1..654 | 17..670 | 3270 | 100 | Plus |
CG32700-PB | 657 | CG32700-RB | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:20:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32700-RB | 4208 | CG32700-RB | 442..1095 | 17..670 | 3270 | 100 | Plus |
CG32700-RA | 1441 | CG32700-RA | 438..1091 | 17..670 | 3270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:20:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9510160..9510632 | 489..17 | 2365 | 100 | Minus |
X | 23542271 | X | 9507082..9507265 | 670..487 | 920 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:20:23 has no hits.
BO08054.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:34 Download gff for
BO08054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32700-PA | 1..657 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:16 Download gff for
BO08054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32700-PB | 1..657 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:10:34 Download gff for
BO08054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32700-RA | 430..1100 | 9..681 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:17:38 Download gff for
BO08054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32700-RA | 430..1100 | 9..681 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:17:38 Download gff for
BO08054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9507073..9507262 | 490..681 | 97 | <- | Minus |
X | 9510160..9510640 | 9..489 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:10:34 Download gff for
BO08054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9401106..9401295 | 490..681 | 97 | <- | Minus |
arm_X | 9404193..9404673 | 9..489 | 99 | | Minus |
BO08054.complete Sequence
688 bp (688 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ638656
> BO08054.complete
GAAGTTATCAGTCGACATGCGTCGCTCCTCGTTCACGCCCGTCTTCAACT
TGAGCACCCAGGAGCCGCTGATCGTGGTGGAGGAATCGCACACCGCCGAG
GATGGTGATGACTTGGAGGGTGCCGCCGGTGGATGTGATCCCACTGCGGC
CGGGACACGCCGTTCCAACAGCGATGACTCCGAACCGGACTCGCCGGTGA
ATCCCTATCTGCTTTGCCCATTTCCCGATATGCAACAGCGACGCAAGCAT
TCGCTGCCATCGCTTCAAATTACCGAGGGCATCACCGCCAGTCAGGTGCG
TCGATTGTCGGAGGTGGGCGGCGAGACTGGCGGGCTCAGTCCCAAGGAGG
TCGAGTTTCTGGCCACGCTCTCGCAGAAGGCCAATCCGACGGCCGGTGGA
CGTAGGCACTCGGTGGTCACCATATCGGCGGTGCCGCCAACGCTTTTCGG
ACGCAATCGCCGCGAGTCCATTTCCGGTGTATCCTTCAGTGGCAGTCGCC
GTGGCAGCGTCATCGCCGGACCGCCATTAACCGATCACCGCGGCAGCGTG
CACAACTTGCAGCTGGACATCATGGATGGCATCGTCCAGCAGCGGAAGAC
GCGCAGCGGAAGCGGCGTCTGGACAGCGCCCGTTCTGCAGGAGGCCGATA
GCAATGTGCCCGTGCAGACAGCAAGCTTTCTAGACCAT
BO08054.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:04:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32700-RB | 657 | CG32700-PB | 1..654 | 17..670 | 3270 | 100 | Plus |
CG32700-RA | 657 | CG32700-PA | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:04:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32700-RB | 4208 | CG32700-RB | 442..1095 | 17..670 | 3270 | 100 | Plus |
CG32700-RA | 1441 | CG32700-RA | 438..1091 | 17..670 | 3270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:03:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9510160..9510632 | 489..17 | 2365 | 100 | Minus |
X | 23542271 | X | 9507082..9507265 | 670..487 | 920 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:03:59 has no hits.
BO08054.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:33 Download gff for
BO08054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32700-RB | 1..657 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:46 Download gff for
BO08054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32700-RB | 825..1495 | 9..681 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:06 Download gff for
BO08054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32700-RA | 438..1091 | 17..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:33 Download gff for
BO08054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32700-RB | 825..1495 | 9..681 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:40 Download gff for
BO08054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32700-RA | 438..1091 | 17..672 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:40 Download gff for
BO08054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9507080..9507262 | 490..672 | 98 | <- | Minus |
X | 9510160..9510632 | 17..489 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:06 Download gff for
BO08054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9401113..9401295 | 490..672 | 98 | <- | Minus |
arm_X | 9404193..9404665 | 17..489 | 100 | | Minus |
BO08054.pep Sequence
Translation from 16 to 688
> BO08054.pep
MRRSSFTPVFNLSTQEPLIVVEESHTAEDGDDLEGAAGGCDPTAAGTRRS
NSDDSEPDSPVNPYLLCPFPDMQQRRKHSLPSLQITEGITASQVRRLSEV
GGETGGLSPKEVEFLATLSQKANPTAGGRRHSVVTISAVPPTLFGRNRRE
SISGVSFSGSRRGSVIAGPPLTDHRGSVHNLQLDIMDGIVQQRKTRSGSG
VWTAPVLQEADSNVPVQTASFLDH
BO08054.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32700-PB | 218 | CG32700-PB | 1..218 | 1..218 | 1120 | 100 | Plus |
CG32700-PA | 218 | CG32700-PA | 1..218 | 1..218 | 1120 | 100 | Plus |
CG6123-PB | 614 | CG6123-PB | 44..247 | 12..215 | 458 | 53.7 | Plus |
CG6123-PA | 614 | CG6123-PA | 44..247 | 12..215 | 458 | 53.7 | Plus |