Clone BO08054 Report

Search the DGRC for BO08054

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:80
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG32700-RA
Protein status:BO08054.pep: validated full length
Sequenced Size:688

Clone Sequence Records

BO08054.3prime Sequence

686 bp (685 high quality bases) assembled on 2006-01-06

> BO08054.3prime
ATGGTCTAGAAAGCTTGCTGTCTGCACGGGCACATTGCTATCGGCCTCCT
GCAGAACGGGCGCTGTCCAGACGCCGCTTCCGCTGCGCGTCTTCCGCTGC
TGGACGATGCCATCCATGATGTCCAGCTGCAAGTTGTGCACGCTGCCGCG
GTGATCGGTTAATGGCGGTCCGGCGATGACGCTGCCACGGCGACTGCCAC
TGAAGGATACACCGGAAATGGACTCGCGGCGATTGCGTCCGAAAAGCGTT
GGCGGCACCGCCGATATGGTGACCACCGAGTGCCTACGTCCACCGGCCGT
CGGATTGGCCTTCTGCGAGAGCGTGGCCAGAAACTCGACCTCCTTGGGAC
TGAGCCCGCCAGTCTCGCCGCCCACCTCCGACAATCGACGCACCTGACTG
GCGGTGATGCCCTCGGTAATTTGAAGCGATGGCAGCGAATGCTTGCGTCG
CTGTTGCATATCGGGAAATGGGCAAAGCAGATAGGGATTCACCGGCGAGT
CCGGTTCGGAGTCATCGCTGTTGGAACGGCGTGTCCCGGCCGCAGTGGGA
TCACATCCACCGGCGGCACCCTCCAAGTCATCACCATCCTCGGCGGTGTG
CGATTCCTCCACCACGATCAGCGGCTCCTGGGTGCTCAAGTTGAAGACGG
GCGTGAACGAGGAGCGACGCATGTCGACTGATAACT

BO08054.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG32700-PA 657 CG32700-RA 1..654 672..19 3270 100 Minus
CG32700-PB 657 CG32700-RB 1..654 672..19 3270 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:13:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG32700-RB 4208 CG32700-RB 442..1095 672..19 3270 100 Minus
CG32700-RA 1441 CG32700-RA 438..1091 672..19 3270 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:12:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9510160..9510632 200..672 2365 100 Plus
X 23542271 X 9507082..9507265 19..202 920 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:12:58 has no hits.

BO08054.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:33 Download gff for BO08054.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32700-PA 1..657 15..672 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:14 Download gff for BO08054.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32700-PB 1..657 15..672 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:10:31 Download gff for BO08054.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32700-RA 430..1100 8..680 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:16:41 Download gff for BO08054.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32700-RA 430..1100 8..680 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:16:41 Download gff for BO08054.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9510160..9510640 200..680 99   Plus
X 9507073..9507262 8..199 97 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:10:31 Download gff for BO08054.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9401106..9401295 8..199 97 <- Plus
arm_X 9404193..9404673 200..680 99   Plus

BO08054.5prime Sequence

686 bp (685 high quality bases) assembled on 2006-01-06

> BO08054.5prime
GAAGTTATCAGTCGACATGCGTCGCTCCTCGTTCACGCCCGTCTTCAACT
TGAGCACCCAGGAGCCGCTGATCGTGGTGGAGGAATCGCACACCGCCGAG
GATGGTGATGACTTGGAGGGTGCCGCCGGTGGATGTGATCCCACTGCGGC
CGGGACACGCCGTTCCAACAGCGATGACTCCGAACCGGACTCGCCGGTGA
ATCCCTATCTGCTTTGCCCATTTCCCGATATGCAACAGCGACGCAAGCAT
TCGCTGCCATCGCTTCAAATTACCGAGGGCATCACCGCCAGTCAGGTGCG
TCGATTGTCGGAGGTGGGCGGCGAGACTGGCGGGCTCAGTCCCAAGGAGG
TCGAGTTTCTGGCCACGCTCTCGCAGAAGGCCAATCCGACGGCCGGTGGA
CGTAGGCACTCGGTGGTCACCATATCGGCGGTGCCGCCAACGCTTTTCGG
ACGCAATCGCCGCGAGTCCATTTCCGGTGTATCCTTCAGTGGCAGTCGCC
GTGGCAGCGTCATCGCCGGACCGCCATTAACCGATCACCGCGGCAGCGTG
CACAACTTGCAGCTGGACATCATGGATGGCATCGTCCAGCAGCGGAAGAC
GCGCAGCGGAAGCGGCGTCTGGACAGCGCCCGTTCTGCAGGAGGCCGATA
GCAATGTGCCCGTGCAGACAGCAAGCTTTCTAGACC

BO08054.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG32700-PA 657 CG32700-RA 1..654 17..670 3270 100 Plus
CG32700-PB 657 CG32700-RB 1..654 17..670 3270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:20:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG32700-RB 4208 CG32700-RB 442..1095 17..670 3270 100 Plus
CG32700-RA 1441 CG32700-RA 438..1091 17..670 3270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:20:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9510160..9510632 489..17 2365 100 Minus
X 23542271 X 9507082..9507265 670..487 920 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:20:23 has no hits.

BO08054.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:34 Download gff for BO08054.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32700-PA 1..657 17..674 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:16 Download gff for BO08054.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32700-PB 1..657 17..674 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:10:34 Download gff for BO08054.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32700-RA 430..1100 9..681 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:17:38 Download gff for BO08054.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32700-RA 430..1100 9..681 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:17:38 Download gff for BO08054.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9507073..9507262 490..681 97 <- Minus
X 9510160..9510640 9..489 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:10:34 Download gff for BO08054.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9401106..9401295 490..681 97 <- Minus
arm_X 9404193..9404673 9..489 99   Minus

BO08054.complete Sequence

688 bp (688 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ638656

> BO08054.complete
GAAGTTATCAGTCGACATGCGTCGCTCCTCGTTCACGCCCGTCTTCAACT
TGAGCACCCAGGAGCCGCTGATCGTGGTGGAGGAATCGCACACCGCCGAG
GATGGTGATGACTTGGAGGGTGCCGCCGGTGGATGTGATCCCACTGCGGC
CGGGACACGCCGTTCCAACAGCGATGACTCCGAACCGGACTCGCCGGTGA
ATCCCTATCTGCTTTGCCCATTTCCCGATATGCAACAGCGACGCAAGCAT
TCGCTGCCATCGCTTCAAATTACCGAGGGCATCACCGCCAGTCAGGTGCG
TCGATTGTCGGAGGTGGGCGGCGAGACTGGCGGGCTCAGTCCCAAGGAGG
TCGAGTTTCTGGCCACGCTCTCGCAGAAGGCCAATCCGACGGCCGGTGGA
CGTAGGCACTCGGTGGTCACCATATCGGCGGTGCCGCCAACGCTTTTCGG
ACGCAATCGCCGCGAGTCCATTTCCGGTGTATCCTTCAGTGGCAGTCGCC
GTGGCAGCGTCATCGCCGGACCGCCATTAACCGATCACCGCGGCAGCGTG
CACAACTTGCAGCTGGACATCATGGATGGCATCGTCCAGCAGCGGAAGAC
GCGCAGCGGAAGCGGCGTCTGGACAGCGCCCGTTCTGCAGGAGGCCGATA
GCAATGTGCCCGTGCAGACAGCAAGCTTTCTAGACCAT

BO08054.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:04:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG32700-RB 657 CG32700-PB 1..654 17..670 3270 100 Plus
CG32700-RA 657 CG32700-PA 1..654 17..670 3270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:04:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG32700-RB 4208 CG32700-RB 442..1095 17..670 3270 100 Plus
CG32700-RA 1441 CG32700-RA 438..1091 17..670 3270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:03:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9510160..9510632 489..17 2365 100 Minus
X 23542271 X 9507082..9507265 670..487 920 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:03:59 has no hits.

BO08054.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:33 Download gff for BO08054.complete
Subject Subject Range Query Range Percent Splice Strand
CG32700-RB 1..657 17..674 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:46 Download gff for BO08054.complete
Subject Subject Range Query Range Percent Splice Strand
CG32700-RB 825..1495 9..681 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:06 Download gff for BO08054.complete
Subject Subject Range Query Range Percent Splice Strand
CG32700-RA 438..1091 17..672 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:33 Download gff for BO08054.complete
Subject Subject Range Query Range Percent Splice Strand
CG32700-RB 825..1495 9..681 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:40 Download gff for BO08054.complete
Subject Subject Range Query Range Percent Splice Strand
CG32700-RA 438..1091 17..672 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:40 Download gff for BO08054.complete
Subject Subject Range Query Range Percent Splice Strand
X 9507080..9507262 490..672 98 <- Minus
X 9510160..9510632 17..489 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:06 Download gff for BO08054.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9401113..9401295 490..672 98 <- Minus
arm_X 9404193..9404665 17..489 100   Minus

BO08054.pep Sequence

Translation from 16 to 688

> BO08054.pep
MRRSSFTPVFNLSTQEPLIVVEESHTAEDGDDLEGAAGGCDPTAAGTRRS
NSDDSEPDSPVNPYLLCPFPDMQQRRKHSLPSLQITEGITASQVRRLSEV
GGETGGLSPKEVEFLATLSQKANPTAGGRRHSVVTISAVPPTLFGRNRRE
SISGVSFSGSRRGSVIAGPPLTDHRGSVHNLQLDIMDGIVQQRKTRSGSG
VWTAPVLQEADSNVPVQTASFLDH

BO08054.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG32700-PB 218 CG32700-PB 1..218 1..218 1120 100 Plus
CG32700-PA 218 CG32700-PA 1..218 1..218 1120 100 Plus
CG6123-PB 614 CG6123-PB 44..247 12..215 458 53.7 Plus
CG6123-PA 614 CG6123-PA 44..247 12..215 458 53.7 Plus