Clone Sequence Records
BO08055.3prime Sequence
953 bp (787 high quality bases) assembled on 2006-01-06
> BO08055.3prime
ATGGTCTAGAAAGCTTGCATCAACAACAAAACAGTAAAAGTTCTTAAACA
TAAAAGACGCTTCATTATCTGATATAAAATTACGTTCTGGCTTTTCCGAG
GAAAACGGATTTACAGTTGGCGGCATTACGACATTTAAGTGTCGATTCGA
TTGGTTAATAAATTGAATCATATCCAAAGGGGCCTCGTATTTTGTATAGG
AAGTAACTACGATGGGGCAGTTGAGATTGAGTGCAGCTTGAATGGTATCT
GGCCAAGTATCCTCCAGAGCGAAACCAGTTGATCGGTACAGACCGCAGTT
AAAGAAGCAAATCAAATTCGGCTGAAGAAAGTGCGATTCTCTGCAGTAAT
CGTGATATAAACTATTCTCAAAATGATAGTTAACCGTTCTCTGGGCTTTT
CTGCAGAAACGGCAGCATTTGATTTTCTTTAGCTGTTCAAAGGATATATT
ATTAGGATTAAGTTCAGGTCCAACAAAGACCACATTCAGAGTTTTCACCG
CTGGCGTTATGTGGAGCAGGAAGAGTTCCCATTTCTGCAGCATATCCGCC
TCAAATTCGATCTCGGCTCCAATTAAGTGAAGAGTCATCTCCTCGCAGTT
TCTGAGGCGCTCGCAAAGTTTCAAGGCAAACCAGGCAGTTAATGGGCCAG
TGGACACCTGGGTAAGTGCTGCGTACTCACACTCATTGGTAACATTAAAG
CTTAGCTTCTTCATCATCTGCTTGGTGTTGGAGCAAGCCATGGGCAGCTC
TCTAAGAATCTTACTGGGCAGTGATGGCTCCATGCGGCCGAACTGTTCCT
GAAACATGATGAAGGCCTTGAAAATCTGATAGGCTCCACACCACTTGGCG
TGCTCCTTGCCTCGGTGCTCCGGCTTATCCCTGCAGAAAGCCACCTCGCC
ACATCCACCGCACATGGATAGACGTTTAAAGCGATGCTCCCCGCACTTGA
GTC
BO08055.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13458-PA | 1905 | CG13458-RA | 973..1902 | 948..19 | 4600 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:25:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13458-RA | 2188 | CG13458-RA | 1180..2115 | 953..19 | 4625 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:25:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15116008..15116300 | 311..19 | 1465 | 100 | Minus |
| 3L | 28110227 | 3L | 15115507..15115783 | 695..419 | 1385 | 100 | Minus |
| 3L | 28110227 | 3L | 15115194..15115446 | 948..696 | 1235 | 99.2 | Minus |
| 3L | 28110227 | 3L | 15115844..15115950 | 418..312 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:25:53 has no hits.
BO08055.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:35 Download gff for
BO08055.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13458-PA | 967..1905 | 15..953 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:17 Download gff for
BO08055.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13458-PA | 967..1905 | 15..953 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:32:16 Download gff for
BO08055.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13458-RA | 1180..2118 | 15..953 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:43:25 Download gff for
BO08055.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13458-RA | 1180..2118 | 15..953 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:43:25 Download gff for
BO08055.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15115188..15115446 | 696..953 | 98 | -> | Minus |
| 3L | 15115507..15115783 | 419..695 | 100 | -> | Minus |
| 3L | 15115844..15115950 | 312..418 | 100 | -> | Minus |
| 3L | 15116008..15116303 | 15..311 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:32:16 Download gff for
BO08055.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15108288..15108546 | 696..953 | 98 | -> | Minus |
| arm_3L | 15108607..15108883 | 419..695 | 100 | -> | Minus |
| arm_3L | 15108944..15109050 | 312..418 | 100 | -> | Minus |
| arm_3L | 15109108..15109403 | 15..311 | 99 | | Minus |
BO08055.5prime Sequence
913 bp (818 high quality bases) assembled on 2006-01-06
> BO08055.5prime
GAAGTTATCAGTCGACATGATTCAGTCGGGGGTCCACAAAAAGAAGCCAA
GGATTCGGAATCGCCAGCGCAACAAGATCAACCAGGTGCCACAGGATCAA
GGGGAATCTCCAGACGCAATTGCGTCTTCACTCAAAAGTAATGGCTCAAA
AGCGGCAAATGGTGTAGAAAGTAAACCTCCGGTGGAAAAGCCCTTACTTA
CAAGTGGAAATTCTCTGCTTGAATCATTATCAAAAATTGGTCAAGTGGAA
AATCCGCAAGAGAACGATACAATCCGGCTGATACAGCAACTGTTACGTAG
GAAATTATTGGCCAAAAATAGTGCTGTGCCATCCAGCGAAAATAAGCCAT
CAACTGATCCGGTCAAAATAGTTACCCAACCAAAGGAAATCAAAAGTGAA
GAAAAGAAACCAAAGATTTCGAGTACCTCGGTTACTCCAAAACTCAAAAC
AGAAGCCAAGGCATCTGGAATTTCAAAAGAAGAGGAAATAAATGATCTAC
TCAAATGCTTGGGCAGCAAACTGCCAAAGGGATCTGGTGAATCCCCAGCA
GCCGCGTTATTCAGCAATCTTGGAAAGCTTTTCAGCCAAGCGCCGCCCAG
CGATGTCGAGTCATCCGATGAGGAAGTGGAGGAGTATGTGGAGTACATCT
ATAAGCCAAGGCAATATTTTATGGCCTCACTGTGCAATTTCTGCAAGTCG
GATCTGTGCGGCCAGAATCGGATACCCTGCTCCCGCTGTGGACTGAGCTA
CTACTGCAGCAGTGGGCACATGAAAGACGACCAGGAGCACCGCCAGCTGT
GCTACGCCCTGCGCCAGACGGTGGACCGCAATGGTCACGAGATGTTCTAC
AAGTGCGGCGACTTCAGTGACGAACAGTTCCGTTCCTTCCNGATCGTGTG
CATTTCGCAGGTG
BO08055.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13458-PA | 1905 | CG13458-RA | 1..888 | 17..904 | 4421 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:23:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13458-RA | 2188 | CG13458-RA | 212..1101 | 15..904 | 4439 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:23:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15113768..15114284 | 15..531 | 2585 | 100 | Plus |
| 3L | 28110227 | 3L | 15114343..15114501 | 530..688 | 795 | 100 | Plus |
| 3L | 28110227 | 3L | 15114823..15114969 | 689..835 | 735 | 100 | Plus |
| 3L | 28110227 | 3L | 15115038..15115109 | 833..904 | 349 | 98.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:23:55 has no hits.
BO08055.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:36 Download gff for
BO08055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13458-PA | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:18 Download gff for
BO08055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13458-PA | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:10:37 Download gff for
BO08055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13458-RA | 206..1110 | 9..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:18:04 Download gff for
BO08055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13458-RA | 206..1110 | 9..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:18:04 Download gff for
BO08055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15113762..15114283 | 9..530 | 99 | -> | Plus |
| 3L | 15114344..15114501 | 531..688 | 100 | -> | Plus |
| 3L | 15114823..15114967 | 689..833 | 100 | -> | Plus |
| 3L | 15115039..15115118 | 834..913 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:10:37 Download gff for
BO08055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15106862..15107383 | 9..530 | 99 | -> | Plus |
| arm_3L | 15107444..15107601 | 531..688 | 100 | -> | Plus |
| arm_3L | 15107923..15108067 | 689..833 | 100 | -> | Plus |
| arm_3L | 15108139..15108218 | 834..913 | 96 | | Plus |
BO08055.complete Sequence
1936 bp assembled on 2007-11-30
GenBank Submission: FJ631030
> BO08055.complete
GAAGTTATCAGTCGACATGATTCAGTCGGGGGTCCACAAAAAGAAGCCAA
GGATTCGGAATCGCCAGCGCAACAAGATCAACCAGGTGCCACAGGATCAA
GGGGAATCTCCAGACGCAATTGCGTCTTCACTCAAAAGTAATGGCTCAAA
AGCGGCAAATGGTGTAGAAAGTAAACCTCCGGTGGAAAAGCCCTTACTTA
CAAGTGGAAATTCTCTGCTTGAATCATTATCAAAAATTGGTCAAGTGGAA
AATCCGCAAGAGAACGATACAATCCGGCTGATACAGCAACTGTTACGTAG
GAAATTATTGGCCAAAAATAGTGCTGTGCCATCCAGCGAAAATAAGCCAT
CAACTGATCCGGTCAAAATAGTTACCCAACCAAAGGAAATCAAAAGTGAA
GAAAAGAAACCAAAGATTTCGAGTACCTCGGTTACTCCAAAACTCAAAAC
AGAAGCCAAGGCATCTGGAATTTCAAAAGAAGAGGAAATAAATGATCTAC
TCAAATGCTTGGGCAGCAAACTGCCAAAGGGATCTGGTGAATCCCCAGCA
GCCGCGTTATTCAGCAATCTTGGAAAGCTTTTCAGCCAAGCGCCGCCCAG
CGATGTCGAGTCATCCGATGAGGAAGTGGAGGAGTATGTGGAGTACATCT
ATAAGCCAAGGCAATATTTTATGGCCTCACTGTGCAATTTCTGCAAGTCG
GATCTGTGCGGCCAGAATCGGATACCCTGCTCCCGCTGTGGACTGAGCTA
CTACTGCAGCAGTGGGCACATGAAAGACGACCAGGAGCACCGCCAGCTGT
GCTACGCCCTGCGCCAGACGGTGGACCGCAATGGTCACGAGATGTTCTAC
AAGTGCGGCGACTTCAGTGACGAACAGTTCCGTTCCTTCCGGATCGTGTG
CATTCGCCAGGTGGAGAAGGAGATGAATCGTCAGCTCAGCGCAACGGAGA
GAGAGTTGCTCCTATTTCCACTGATCTGCGCCGACTCAAAGTGCCGGGAG
CATCGCTTTAAACGTCTATCCATGTGCGGTGGATGTGGCGAGGTGGCTTT
CTGCAAGGATAAGCCGGAGCACCGAGGCAAGGAGCACGCCAAGTGGTGTG
GAGCCTATCAGATTTTCAAGGCCTTCATCATGTTTCAGGAACAGTTCGGC
CGCATGGAGCCATCACTGCCCAGTAAGATTCTTAGAGAGCTGCCCATGGC
TTGCTCCAACACCAAGCAGATGATGAAGAAGCTAAGCTTTAATGTTACCA
ATGAGTGTGAGTACGCAGCACTTACCCAGGTGTCCACTGGCCCATTAACT
GCCTGGTTTGCCTTGAAACTTTGCGAGCGCCTCAGAAACTGCGAGGAGAT
GACTCTTCACTTAATTGGAGCCGAGATCGAATTTGAGGCGGATATGCTGC
AGAAATGGGAACTCTTCCTGCTCCACATAACGCCAGCGGTGAAAACTCTG
AATGTGGTCTTTGTTGGACCTGAACTTAATCCTAATAATATATCCTTTGA
ACAGCTAAAGAAAATCAAATGCTGCCGTTTCTGCAGAAAAGCCCAGAGAA
CGGTTAACTATCATTTTGAGAATAGTTTATATCACGATTACTGCAGAGAA
TCGCACTTTCTTCAGCCGAATTTGATTTGCTTCTTTAACTGCGGTCTGTA
CCGATCAACTGGTTTCGCTCTGGAGGATACTTGGCCAGATACCATTCAAG
CTGCACTCAATCTCAACTGCCCCATCGTAGTTACTTCCTATACAAAATAC
GAGGCCCCTTTGGATATGATTCAATTTATTAACCAATCGAATCGACACTT
AAATGTCGTAATGCCGCCAACTGTAAATCCGTTTTCCTCGGAAAAGCCAG
AACGTAATTTTATATCAGATAATGAAGCGTCTTTTATGTTTAAGAACTTT
TACTGTTTTGTTGTTGATGCAAGCTTTCTAGACCAT
BO08055.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:33:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13458-RA | 1905 | CG13458-PA | 1..1902 | 17..1918 | 9510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:33:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13458-RA | 2188 | CG13458-RA | 212..2115 | 15..1918 | 9520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:33:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15113768..15114284 | 15..531 | 2585 | 100 | Plus |
| 3L | 28110227 | 3L | 15115038..15115446 | 833..1241 | 2045 | 100 | Plus |
| 3L | 28110227 | 3L | 15116008..15116300 | 1626..1918 | 1465 | 100 | Plus |
| 3L | 28110227 | 3L | 15115507..15115783 | 1242..1518 | 1385 | 100 | Plus |
| 3L | 28110227 | 3L | 15114343..15114501 | 530..688 | 795 | 100 | Plus |
| 3L | 28110227 | 3L | 15114823..15114969 | 689..835 | 735 | 100 | Plus |
| 3L | 28110227 | 3L | 15115844..15115950 | 1519..1625 | 535 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:33:45 has no hits.
BO08055.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:26 Download gff for
BO08055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13458-RA | 1..1905 | 17..1922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:05:41 Download gff for
BO08055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13458-RA | 206..2118 | 9..1922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:58 Download gff for
BO08055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13458-RA | 214..2115 | 17..1920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:44 Download gff for
BO08055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13458-RA | 214..2115 | 17..1920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:53 Download gff for
BO08055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13458-RA | 214..2115 | 17..1920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:53 Download gff for
BO08055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15115507..15115783 | 1242..1518 | 100 | -> | Plus |
| 3L | 15115844..15115950 | 1519..1625 | 100 | -> | Plus |
| 3L | 15116008..15116300 | 1626..1920 | 99 | | Plus |
| 3L | 15115039..15115446 | 834..1241 | 100 | -> | Plus |
| 3L | 15113770..15114283 | 17..530 | 100 | -> | Plus |
| 3L | 15114344..15114501 | 531..688 | 100 | -> | Plus |
| 3L | 15114823..15114967 | 689..833 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:58 Download gff for
BO08055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15108607..15108883 | 1242..1518 | 100 | -> | Plus |
| arm_3L | 15108944..15109050 | 1519..1625 | 100 | -> | Plus |
| arm_3L | 15106870..15107383 | 17..530 | 100 | -> | Plus |
| arm_3L | 15107444..15107601 | 531..688 | 100 | -> | Plus |
| arm_3L | 15107923..15108067 | 689..833 | 100 | -> | Plus |
| arm_3L | 15108139..15108546 | 834..1241 | 100 | -> | Plus |
| arm_3L | 15109108..15109400 | 1626..1920 | 99 | | Plus |
BO08055.pep Sequence
Translation from 16 to 1936
> BO08055.pep
MIQSGVHKKKPRIRNRQRNKINQVPQDQGESPDAIASSLKSNGSKAANGV
ESKPPVEKPLLTSGNSLLESLSKIGQVENPQENDTIRLIQQLLRRKLLAK
NSAVPSSENKPSTDPVKIVTQPKEIKSEEKKPKISSTSVTPKLKTEAKAS
GISKEEEINDLLKCLGSKLPKGSGESPAAALFSNLGKLFSQAPPSDVESS
DEEVEEYVEYIYKPRQYFMASLCNFCKSDLCGQNRIPCSRCGLSYYCSSG
HMKDDQEHRQLCYALRQTVDRNGHEMFYKCGDFSDEQFRSFRIVCIRQVE
KEMNRQLSATERELLLFPLICADSKCREHRFKRLSMCGGCGEVAFCKDKP
EHRGKEHAKWCGAYQIFKAFIMFQEQFGRMEPSLPSKILRELPMACSNTK
QMMKKLSFNVTNECEYAALTQVSTGPLTAWFALKLCERLRNCEEMTLHLI
GAEIEFEADMLQKWELFLLHITPAVKTLNVVFVGPELNPNNISFEQLKKI
KCCRFCRKAQRTVNYHFENSLYHDYCRESHFLQPNLICFFNCGLYRSTGF
ALEDTWPDTIQAALNLNCPIVVTSYTKYEAPLDMIQFINQSNRHLNVVMP
PTVNPFSSEKPERNFISDNEASFMFKNFYCFVVDASFLDH
BO08055.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:44:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13458-PA | 634 | CG13458-PA | 1..634 | 1..634 | 3364 | 100 | Plus |
