Clone Sequence Records
BO08056.3prime Sequence
970 bp (796 high quality bases) assembled on 2006-01-06
> BO08056.3prime
ATGGTCTAGAAAGCTTGCTTTGGGCCGAATCTTCTCGTACATGAATTTCT
GCACGTGCTTGTTGTCCGGCTGCATGAGCTTCTTCTTGTTGAACTCGAAT
TGGGCCAGCGCGAAATCGTACAGATCGTTTTCCATTTGCCAGATTTTTGT
CTTTTGAATGGATTTAATTGTCGATTCGCTGGGCGGAAGCTTGGAAGATG
TCACCCGCAGATGAGATTTGTTTGAATTATGATAGTGCTCACGAAAGCCG
TGAAAAATTCTTGGAAGGGATCTCTCGAGCAGATCCACAAACTCGTACAT
CTGCTCTGTGACTCCGACTAGGAAGTATTCGTTGACTAGATTGCGCTTGG
CCTGGTCCAAGGCCCAACTGCTGCCGGGTTCCCAGCACTCGGCTGCATGG
CCACAGAAGAAGGGTATCTGCAGCCACATGTTTTTGGGATCACAGTCGGG
TTGTTTCTGCACCACGCACTCATCGAAGGTAATTTTATTGCCCGCCTTCT
TGCGGACTAAATTCGGTCGGTAGTTGTCGCCAAAGCGTAGAAAGTAATAG
TAGGAGACAAGTCTGTCGAGCGGTTTGCGCACCAAATTGATGTAGATGGG
CTTGTGGGCGATTTGGAATTTTGAGAAGTCTAGGAAGGCCATGTGGCCGT
GATAAAGAGCTGGCTTCATCTCGTGCCACCTGGAAACATTGCGCACGAAT
TGGATTTGATTGGGAAGCGAGAGGACGTGCATGTTGGCAGTGACATTGAT
GTGCAGCACATGGAATTTATTGGGCTTGCACAGATCGTATGCTATGTTAA
CAAAGCTGGTGGATCCCGTTTTCGGTACGCGATTGTAAAGCACCACTAGG
TGCTCCTCGAAGTCAAAGTCATCGGTGGTGGACGAGGCATGCTGATCTGG
GCTCAGAGAATCGCCCAGCTTGAAAAGCGGCTTGAAAGCATGTTCCAGGC
GAATCTCTGACCAAAGCACC
BO08056.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10234-PA | 1050 | Hs2st-RA | 98..1047 | 968..19 | 4700 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:36:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hs2st-RA | 1652 | CG10234-RA | 229..1178 | 968..19 | 4720 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:36:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19444109..19444425 | 620..936 | 1570 | 99.7 | Plus |
2L | 23513712 | 2L | 19443307..19443549 | 19..261 | 1215 | 100 | Plus |
2L | 23513712 | 2L | 19443631..19443851 | 260..480 | 1105 | 100 | Plus |
2L | 23513712 | 2L | 19443912..19444050 | 481..619 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:36:44 has no hits.
BO08056.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:37 Download gff for
BO08056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs2st-PA | 95..1050 | 16..970 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:21 Download gff for
BO08056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10234-PA | 95..1050 | 16..970 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:38:09 Download gff for
BO08056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs2st-RA | 237..1189 | 19..970 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:47 Download gff for
BO08056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs2st-RA | 226..1178 | 19..970 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:47 Download gff for
BO08056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19443307..19443547 | 19..259 | 100 | <- | Plus |
2L | 19443631..19443851 | 260..480 | 100 | <- | Plus |
2L | 19443912..19444050 | 481..619 | 100 | <- | Plus |
2L | 19444109..19444427 | 620..938 | 99 | <- | Plus |
2L | 19444493..19444524 | 939..970 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:38:09 Download gff for
BO08056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19443307..19443547 | 19..259 | 100 | <- | Plus |
arm_2L | 19443631..19443851 | 260..480 | 100 | <- | Plus |
arm_2L | 19443912..19444050 | 481..619 | 100 | <- | Plus |
arm_2L | 19444109..19444427 | 620..938 | 99 | <- | Plus |
arm_2L | 19444493..19444524 | 939..970 | 96 | | Plus |
BO08056.5prime Sequence
939 bp (815 high quality bases) assembled on 2006-01-06
> BO08056.5prime
GAAGTTATCAGTCGACATGTTTAGGAAACTGCTTAAGATGTGGATTCTGC
TCCGACCCACCCACTGGCTGATCCTGATAGCCCTGTGCGCGGTCACCTGT
GCAGGTTACTGGTTGCTTTGGTCAGAGATTCGCCTGGAACATGCCTTCAA
GCCGCTTTCCAAGCTGGGCGATTCTCTGAGCCCAGATCAGCATGCCTCGT
CCACCACCGATGACTTTGACTTCGAGGAGCACCTAGTGGTGCTTTACAAT
CGCGTACCGAAAACGGGATCCACCAGCTTTGTTAACATAGCATACGATCT
GTGCAAGCCCAATAAATTCCATGTGCTGCACATCAATGTCACTGCCAACA
TGCACGTCCTCTCGCTTCCCAATCAAATCCAATTCGTGCGCAATGTTTCC
AGGTGGCACGAGATGAAGCCAGCTCTTTATCACGGCCACATGGCCTTCCT
AGACTTCTCAAAATTCCAAATCGCCCACAAGCCCATCTACATCAATTTGG
TGCGCAAACCGCTCGACAGACTTGTCTCCTACTATTACTTTCTACGCTTT
GGCGACAACTACCGACCGAATTTAGTCCGCAAGAAGGCGGGCAATAAAAT
TACCTTCGATGAGTGCGTGGTGCAGAAACAACCCGACTGTGATCCCAAAA
ACATGTGGCTGCAGATACCCTTCTTCTGTGGCCATGCAGCCGAGTGCTGG
GAACCCGGCAGCAGTTGGGCCTTGGACCAGGCCAAGCGCAATCTAGTCAA
CGAATACTTCCTAGTCGGAGTCACAGAGCAGATGTACGAGTTTGTGGATC
TGCTCGAGAGATCCCTTCCAAGAATTTTTCACGGCTTTCGTGAGCACTAT
CATAATTCAAACAAATCTCATCTGCGGGTGACATCTTCCAAGCTTCCGCC
CAGCGAATCGACAATTAAATCCATTCAAAAGACAAAAAT
BO08056.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10234-PA | 1050 | Hs2st-RA | 1..923 | 17..939 | 4615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:55:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hs2st-RA | 1652 | CG10234-RA | 131..1054 | 16..939 | 4620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:54:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19444109..19444428 | 462..143 | 1600 | 100 | Minus |
2L | 23513712 | 2L | 19443631..19443851 | 822..602 | 1105 | 100 | Minus |
2L | 23513712 | 2L | 19443912..19444050 | 601..463 | 695 | 100 | Minus |
2L | 23513712 | 2L | 19444493..19444620 | 143..16 | 640 | 100 | Minus |
2L | 23513712 | 2L | 19443431..19443549 | 939..821 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:54:59 has no hits.
BO08056.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:38 Download gff for
BO08056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs2st-PA | 1..923 | 17..939 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:22 Download gff for
BO08056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10234-PA | 1..923 | 17..939 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:45:43 Download gff for
BO08056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs2st-RA | 139..1065 | 10..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:24:05 Download gff for
BO08056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs2st-RA | 128..1054 | 10..939 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:24:05 Download gff for
BO08056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19444109..19444427 | 144..462 | 100 | <- | Minus |
2L | 19444493..19444623 | 10..143 | 97 | | Minus |
2L | 19443431..19443547 | 823..939 | 100 | <- | Minus |
2L | 19443631..19443851 | 602..822 | 100 | <- | Minus |
2L | 19443912..19444050 | 463..601 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:45:43 Download gff for
BO08056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19443431..19443547 | 823..939 | 100 | <- | Minus |
arm_2L | 19443631..19443851 | 602..822 | 100 | <- | Minus |
arm_2L | 19443912..19444050 | 463..601 | 100 | <- | Minus |
arm_2L | 19444109..19444427 | 144..462 | 100 | <- | Minus |
arm_2L | 19444493..19444623 | 10..143 | 97 | | Minus |
BO08056.complete Sequence
1081 bp (1081 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631031
> BO08056.complete
GAAGTTATCAGTCGACATGTTTAGGAAACTGCTTAAGATGTGGATTCTGC
TCCGACCCACCCACTGGCTGATCCTGATAGCCCTGTGCGCGGTCACCTGT
GCAGGTTACTGGTTGCTTTGGTCAGAGATTCGCCTGGAACATGCCTTCAA
GCCGCTTTCCAAGCTGGGCGATTCTCTGAGCCCAGATCAGCATGCCTCGT
CCACCACCGATGACTTTGACTTCGAGGAGCACCTAGTGGTGCTTTACAAT
CGCGTACCGAAAACGGGATCCACCAGCTTTGTTAACATAGCATACGATCT
GTGCAAGCCCAATAAATTCCATGTGCTGCACATCAATGTCACTGCCAACA
TGCACGTCCTCTCGCTTCCCAATCAAATCCAATTCGTGCGCAATGTTTCC
AGGTGGCACGAGATGAAGCCAGCTCTTTATCACGGCCACATGGCCTTCCT
AGACTTCTCAAAATTCCAAATCGCCCACAAGCCCATCTACATCAATTTGG
TGCGCAAACCGCTCGACAGACTTGTCTCCTACTATTACTTTCTACGCTTT
GGCGACAACTACCGACCGAATTTAGTCCGCAAGAAGGCGGGCAATAAAAT
TACCTTCGATGAGTGCGTGGTGCAGAAACAACCCGACTGTGATCCCAAAA
ACATGTGGCTGCAGATACCCTTCTTCTGTGGCCATGCAGCCGAGTGCTGG
GAACCCGGCAGCAGTTGGGCCTTGGACCAGGCCAAGCGCAATCTAGTCAA
CGAATACTTCCTAGTCGGAGTCACAGAGCAGATGTACGAGTTTGTGGATC
TGCTCGAGAGATCCCTTCCAAGAATTTTTCACGGCTTTCGTGAGCACTAT
CATAATTCAAACAAATCTCATCTGCGGGTGACATCTTCCAAGCTTCCGCC
CAGCGAATCGACAATTAAATCCATTCAAAAGACAAAAATCTGGCAAATGG
AAAACGATCTGTACGATTTCGCGCTGGCCCAATTCGAGTTCAACAAGAAG
AAGCTCATGCAGCCGGACAACAAGCACGTGCAGAAATTCATGTACGAGAA
GATTCGGCCCAAAGCAAGCTTTCTAGACCAT
BO08056.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:43:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hs2st-RA | 1050 | CG10234-PA | 1..1047 | 17..1063 | 5235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:43:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hs2st-RA | 1652 | CG10234-RA | 131..1178 | 16..1063 | 5240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:42:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19444109..19444428 | 462..143 | 1600 | 100 | Minus |
2L | 23513712 | 2L | 19443307..19443549 | 1063..821 | 1215 | 100 | Minus |
2L | 23513712 | 2L | 19443631..19443851 | 822..602 | 1105 | 100 | Minus |
2L | 23513712 | 2L | 19443912..19444050 | 601..463 | 695 | 100 | Minus |
2L | 23513712 | 2L | 19444493..19444620 | 143..16 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:43:00 has no hits.
BO08056.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:27 Download gff for
BO08056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs2st-RA | 1..1050 | 17..1066 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:38 Download gff for
BO08056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs2st-RA | 139..1189 | 10..1063 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:34:36 Download gff for
BO08056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs2st-RA | 149..1189 | 23..1065 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:27 Download gff for
BO08056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs2st-RA | 139..1189 | 10..1063 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:40:26 Download gff for
BO08056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs2st-RA | 138..1178 | 23..1065 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:40:26 Download gff for
BO08056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19443631..19443851 | 602..822 | 100 | <- | Minus |
2L | 19443912..19444050 | 463..601 | 100 | <- | Minus |
2L | 19443304..19443547 | 823..1065 | 99 | <- | Minus |
2L | 19444109..19444427 | 144..462 | 100 | <- | Minus |
2L | 19444493..19444613 | 23..143 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:34:36 Download gff for
BO08056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19443631..19443851 | 602..822 | 100 | <- | Minus |
arm_2L | 19443912..19444050 | 463..601 | 100 | <- | Minus |
arm_2L | 19443304..19443547 | 823..1065 | 99 | <- | Minus |
arm_2L | 19444109..19444427 | 144..462 | 100 | <- | Minus |
arm_2L | 19444493..19444613 | 23..143 | 100 | | Minus |
BO08056.pep Sequence
Translation from 16 to 1081
> BO08056.pep
MFRKLLKMWILLRPTHWLILIALCAVTCAGYWLLWSEIRLEHAFKPLSKL
GDSLSPDQHASSTTDDFDFEEHLVVLYNRVPKTGSTSFVNIAYDLCKPNK
FHVLHINVTANMHVLSLPNQIQFVRNVSRWHEMKPALYHGHMAFLDFSKF
QIAHKPIYINLVRKPLDRLVSYYYFLRFGDNYRPNLVRKKAGNKITFDEC
VVQKQPDCDPKNMWLQIPFFCGHAAECWEPGSSWALDQAKRNLVNEYFLV
GVTEQMYEFVDLLERSLPRIFHGFREHYHNSNKSHLRVTSSKLPPSESTI
KSIQKTKIWQMENDLYDFALAQFEFNKKKLMQPDNKHVQKFMYEKIRPKA
SFLDH
BO08056.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hs2st-PA | 349 | CG10234-PA | 1..349 | 1..349 | 1898 | 100 | Plus |
pip-PA | 413 | CG9614-PA | 124..382 | 74..318 | 256 | 28.4 | Plus |
pip-PN | 513 | CG9614-PN | 169..476 | 37..318 | 246 | 26.8 | Plus |
pip-PL | 514 | CG9614-PL | 170..477 | 37..318 | 246 | 26.8 | Plus |
pip-PI | 358 | CG9614-PI | 124..339 | 74..275 | 237 | 30.6 | Plus |