Clone BO08056 Report

Search the DGRC for BO08056

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:80
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptHs2st-RA
Protein status:BO08056.pep: validated full length
Sequenced Size:1081

Clone Sequence Records

BO08056.3prime Sequence

970 bp (796 high quality bases) assembled on 2006-01-06

> BO08056.3prime
ATGGTCTAGAAAGCTTGCTTTGGGCCGAATCTTCTCGTACATGAATTTCT
GCACGTGCTTGTTGTCCGGCTGCATGAGCTTCTTCTTGTTGAACTCGAAT
TGGGCCAGCGCGAAATCGTACAGATCGTTTTCCATTTGCCAGATTTTTGT
CTTTTGAATGGATTTAATTGTCGATTCGCTGGGCGGAAGCTTGGAAGATG
TCACCCGCAGATGAGATTTGTTTGAATTATGATAGTGCTCACGAAAGCCG
TGAAAAATTCTTGGAAGGGATCTCTCGAGCAGATCCACAAACTCGTACAT
CTGCTCTGTGACTCCGACTAGGAAGTATTCGTTGACTAGATTGCGCTTGG
CCTGGTCCAAGGCCCAACTGCTGCCGGGTTCCCAGCACTCGGCTGCATGG
CCACAGAAGAAGGGTATCTGCAGCCACATGTTTTTGGGATCACAGTCGGG
TTGTTTCTGCACCACGCACTCATCGAAGGTAATTTTATTGCCCGCCTTCT
TGCGGACTAAATTCGGTCGGTAGTTGTCGCCAAAGCGTAGAAAGTAATAG
TAGGAGACAAGTCTGTCGAGCGGTTTGCGCACCAAATTGATGTAGATGGG
CTTGTGGGCGATTTGGAATTTTGAGAAGTCTAGGAAGGCCATGTGGCCGT
GATAAAGAGCTGGCTTCATCTCGTGCCACCTGGAAACATTGCGCACGAAT
TGGATTTGATTGGGAAGCGAGAGGACGTGCATGTTGGCAGTGACATTGAT
GTGCAGCACATGGAATTTATTGGGCTTGCACAGATCGTATGCTATGTTAA
CAAAGCTGGTGGATCCCGTTTTCGGTACGCGATTGTAAAGCACCACTAGG
TGCTCCTCGAAGTCAAAGTCATCGGTGGTGGACGAGGCATGCTGATCTGG
GCTCAGAGAATCGCCCAGCTTGAAAAGCGGCTTGAAAGCATGTTCCAGGC
GAATCTCTGACCAAAGCACC

BO08056.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG10234-PA 1050 Hs2st-RA 98..1047 968..19 4700 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
Hs2st-RA 1652 CG10234-RA 229..1178 968..19 4720 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:36:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19444109..19444425 620..936 1570 99.7 Plus
2L 23513712 2L 19443307..19443549 19..261 1215 100 Plus
2L 23513712 2L 19443631..19443851 260..480 1105 100 Plus
2L 23513712 2L 19443912..19444050 481..619 695 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:36:44 has no hits.

BO08056.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:37 Download gff for BO08056.3prime
Subject Subject Range Query Range Percent Splice Strand
Hs2st-PA 95..1050 16..970 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:21 Download gff for BO08056.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10234-PA 95..1050 16..970 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:38:09 Download gff for BO08056.3prime
Subject Subject Range Query Range Percent Splice Strand
Hs2st-RA 237..1189 19..970 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:47 Download gff for BO08056.3prime
Subject Subject Range Query Range Percent Splice Strand
Hs2st-RA 226..1178 19..970 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:47 Download gff for BO08056.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19443307..19443547 19..259 100 <- Plus
2L 19443631..19443851 260..480 100 <- Plus
2L 19443912..19444050 481..619 100 <- Plus
2L 19444109..19444427 620..938 99 <- Plus
2L 19444493..19444524 939..970 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:38:09 Download gff for BO08056.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19443307..19443547 19..259 100 <- Plus
arm_2L 19443631..19443851 260..480 100 <- Plus
arm_2L 19443912..19444050 481..619 100 <- Plus
arm_2L 19444109..19444427 620..938 99 <- Plus
arm_2L 19444493..19444524 939..970 96   Plus

BO08056.5prime Sequence

939 bp (815 high quality bases) assembled on 2006-01-06

> BO08056.5prime
GAAGTTATCAGTCGACATGTTTAGGAAACTGCTTAAGATGTGGATTCTGC
TCCGACCCACCCACTGGCTGATCCTGATAGCCCTGTGCGCGGTCACCTGT
GCAGGTTACTGGTTGCTTTGGTCAGAGATTCGCCTGGAACATGCCTTCAA
GCCGCTTTCCAAGCTGGGCGATTCTCTGAGCCCAGATCAGCATGCCTCGT
CCACCACCGATGACTTTGACTTCGAGGAGCACCTAGTGGTGCTTTACAAT
CGCGTACCGAAAACGGGATCCACCAGCTTTGTTAACATAGCATACGATCT
GTGCAAGCCCAATAAATTCCATGTGCTGCACATCAATGTCACTGCCAACA
TGCACGTCCTCTCGCTTCCCAATCAAATCCAATTCGTGCGCAATGTTTCC
AGGTGGCACGAGATGAAGCCAGCTCTTTATCACGGCCACATGGCCTTCCT
AGACTTCTCAAAATTCCAAATCGCCCACAAGCCCATCTACATCAATTTGG
TGCGCAAACCGCTCGACAGACTTGTCTCCTACTATTACTTTCTACGCTTT
GGCGACAACTACCGACCGAATTTAGTCCGCAAGAAGGCGGGCAATAAAAT
TACCTTCGATGAGTGCGTGGTGCAGAAACAACCCGACTGTGATCCCAAAA
ACATGTGGCTGCAGATACCCTTCTTCTGTGGCCATGCAGCCGAGTGCTGG
GAACCCGGCAGCAGTTGGGCCTTGGACCAGGCCAAGCGCAATCTAGTCAA
CGAATACTTCCTAGTCGGAGTCACAGAGCAGATGTACGAGTTTGTGGATC
TGCTCGAGAGATCCCTTCCAAGAATTTTTCACGGCTTTCGTGAGCACTAT
CATAATTCAAACAAATCTCATCTGCGGGTGACATCTTCCAAGCTTCCGCC
CAGCGAATCGACAATTAAATCCATTCAAAAGACAAAAAT

BO08056.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG10234-PA 1050 Hs2st-RA 1..923 17..939 4615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
Hs2st-RA 1652 CG10234-RA 131..1054 16..939 4620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:54:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19444109..19444428 462..143 1600 100 Minus
2L 23513712 2L 19443631..19443851 822..602 1105 100 Minus
2L 23513712 2L 19443912..19444050 601..463 695 100 Minus
2L 23513712 2L 19444493..19444620 143..16 640 100 Minus
2L 23513712 2L 19443431..19443549 939..821 595 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:54:59 has no hits.

BO08056.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:38 Download gff for BO08056.5prime
Subject Subject Range Query Range Percent Splice Strand
Hs2st-PA 1..923 17..939 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:22 Download gff for BO08056.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10234-PA 1..923 17..939 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:45:43 Download gff for BO08056.5prime
Subject Subject Range Query Range Percent Splice Strand
Hs2st-RA 139..1065 10..939 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:24:05 Download gff for BO08056.5prime
Subject Subject Range Query Range Percent Splice Strand
Hs2st-RA 128..1054 10..939 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:24:05 Download gff for BO08056.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19444109..19444427 144..462 100 <- Minus
2L 19444493..19444623 10..143 97   Minus
2L 19443431..19443547 823..939 100 <- Minus
2L 19443631..19443851 602..822 100 <- Minus
2L 19443912..19444050 463..601 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:45:43 Download gff for BO08056.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19443431..19443547 823..939 100 <- Minus
arm_2L 19443631..19443851 602..822 100 <- Minus
arm_2L 19443912..19444050 463..601 100 <- Minus
arm_2L 19444109..19444427 144..462 100 <- Minus
arm_2L 19444493..19444623 10..143 97   Minus

BO08056.complete Sequence

1081 bp (1081 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631031

> BO08056.complete
GAAGTTATCAGTCGACATGTTTAGGAAACTGCTTAAGATGTGGATTCTGC
TCCGACCCACCCACTGGCTGATCCTGATAGCCCTGTGCGCGGTCACCTGT
GCAGGTTACTGGTTGCTTTGGTCAGAGATTCGCCTGGAACATGCCTTCAA
GCCGCTTTCCAAGCTGGGCGATTCTCTGAGCCCAGATCAGCATGCCTCGT
CCACCACCGATGACTTTGACTTCGAGGAGCACCTAGTGGTGCTTTACAAT
CGCGTACCGAAAACGGGATCCACCAGCTTTGTTAACATAGCATACGATCT
GTGCAAGCCCAATAAATTCCATGTGCTGCACATCAATGTCACTGCCAACA
TGCACGTCCTCTCGCTTCCCAATCAAATCCAATTCGTGCGCAATGTTTCC
AGGTGGCACGAGATGAAGCCAGCTCTTTATCACGGCCACATGGCCTTCCT
AGACTTCTCAAAATTCCAAATCGCCCACAAGCCCATCTACATCAATTTGG
TGCGCAAACCGCTCGACAGACTTGTCTCCTACTATTACTTTCTACGCTTT
GGCGACAACTACCGACCGAATTTAGTCCGCAAGAAGGCGGGCAATAAAAT
TACCTTCGATGAGTGCGTGGTGCAGAAACAACCCGACTGTGATCCCAAAA
ACATGTGGCTGCAGATACCCTTCTTCTGTGGCCATGCAGCCGAGTGCTGG
GAACCCGGCAGCAGTTGGGCCTTGGACCAGGCCAAGCGCAATCTAGTCAA
CGAATACTTCCTAGTCGGAGTCACAGAGCAGATGTACGAGTTTGTGGATC
TGCTCGAGAGATCCCTTCCAAGAATTTTTCACGGCTTTCGTGAGCACTAT
CATAATTCAAACAAATCTCATCTGCGGGTGACATCTTCCAAGCTTCCGCC
CAGCGAATCGACAATTAAATCCATTCAAAAGACAAAAATCTGGCAAATGG
AAAACGATCTGTACGATTTCGCGCTGGCCCAATTCGAGTTCAACAAGAAG
AAGCTCATGCAGCCGGACAACAAGCACGTGCAGAAATTCATGTACGAGAA
GATTCGGCCCAAAGCAAGCTTTCTAGACCAT

BO08056.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:43:01
Subject Length Description Subject Range Query Range Score Percent Strand
Hs2st-RA 1050 CG10234-PA 1..1047 17..1063 5235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
Hs2st-RA 1652 CG10234-RA 131..1178 16..1063 5240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:42:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19444109..19444428 462..143 1600 100 Minus
2L 23513712 2L 19443307..19443549 1063..821 1215 100 Minus
2L 23513712 2L 19443631..19443851 822..602 1105 100 Minus
2L 23513712 2L 19443912..19444050 601..463 695 100 Minus
2L 23513712 2L 19444493..19444620 143..16 640 100 Minus
Blast to na_te.dros performed on 2014-11-26 21:43:00 has no hits.

BO08056.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:27 Download gff for BO08056.complete
Subject Subject Range Query Range Percent Splice Strand
Hs2st-RA 1..1050 17..1066 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:38 Download gff for BO08056.complete
Subject Subject Range Query Range Percent Splice Strand
Hs2st-RA 139..1189 10..1063 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:34:36 Download gff for BO08056.complete
Subject Subject Range Query Range Percent Splice Strand
Hs2st-RA 149..1189 23..1065 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:27 Download gff for BO08056.complete
Subject Subject Range Query Range Percent Splice Strand
Hs2st-RA 139..1189 10..1063 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:40:26 Download gff for BO08056.complete
Subject Subject Range Query Range Percent Splice Strand
Hs2st-RA 138..1178 23..1065 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:40:26 Download gff for BO08056.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19443631..19443851 602..822 100 <- Minus
2L 19443912..19444050 463..601 100 <- Minus
2L 19443304..19443547 823..1065 99 <- Minus
2L 19444109..19444427 144..462 100 <- Minus
2L 19444493..19444613 23..143 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:34:36 Download gff for BO08056.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19443631..19443851 602..822 100 <- Minus
arm_2L 19443912..19444050 463..601 100 <- Minus
arm_2L 19443304..19443547 823..1065 99 <- Minus
arm_2L 19444109..19444427 144..462 100 <- Minus
arm_2L 19444493..19444613 23..143 100   Minus

BO08056.pep Sequence

Translation from 16 to 1081

> BO08056.pep
MFRKLLKMWILLRPTHWLILIALCAVTCAGYWLLWSEIRLEHAFKPLSKL
GDSLSPDQHASSTTDDFDFEEHLVVLYNRVPKTGSTSFVNIAYDLCKPNK
FHVLHINVTANMHVLSLPNQIQFVRNVSRWHEMKPALYHGHMAFLDFSKF
QIAHKPIYINLVRKPLDRLVSYYYFLRFGDNYRPNLVRKKAGNKITFDEC
VVQKQPDCDPKNMWLQIPFFCGHAAECWEPGSSWALDQAKRNLVNEYFLV
GVTEQMYEFVDLLERSLPRIFHGFREHYHNSNKSHLRVTSSKLPPSESTI
KSIQKTKIWQMENDLYDFALAQFEFNKKKLMQPDNKHVQKFMYEKIRPKA
SFLDH

BO08056.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:55
Subject Length Description Subject Range Query Range Score Percent Strand
Hs2st-PA 349 CG10234-PA 1..349 1..349 1898 100 Plus
pip-PA 413 CG9614-PA 124..382 74..318 256 28.4 Plus
pip-PN 513 CG9614-PN 169..476 37..318 246 26.8 Plus
pip-PL 514 CG9614-PL 170..477 37..318 246 26.8 Plus
pip-PI 358 CG9614-PI 124..339 74..275 237 30.6 Plus