Clone BO08058 Report

Search the DGRC for BO08058

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:80
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG8560-RA
Protein status:BO08058.pep: validated full length
Sequenced Size:1288

Clone Sequence Records

BO08058.3prime Sequence

954 bp (858 high quality bases) assembled on 2006-01-06

> BO08058.3prime
ATGGTCTAGAAAGCTTGCGTACTTATCGGCAACCTTCTGGGCCATGGCCT
TGATGCCCACCCAGGTCTCGGAAACGAAGCCCTCGATCTGGCTGGTGCTG
GGATTGAAGCCAGTACCGCCGGCCGGCAGTTCCATGGTAATCGACACCGG
GAAGTTGGCCACTCCGAAGGCATAGTCGTCACTGCCGCCGGCAGCAGCGT
ACAGAACGTTGGTGGAACTGCCCACGGTATACTTCGTTCCGGTCGCACTC
TTGATGGCATCCGCTCCACCCTGGGCCACCTCATCGTTGTCGCGCCAGCT
GCTGGGCAGAGCAGACGTCCAGCCCCAAGGATACAGCAGGTAGTTGCCAT
AGGAGTGGAGGGTCAGGTAGAACTTGCCACGTCCGGTCAGACTGAGCAGG
ATATCGCGAATCAACTGAGTCTCCGGCTCGGAGAAGGCCGTCTCACCCTT
GAAGGTATCAGAGCAGGAGTAGCTGGAGGCACCAACCTCTCCCCAATGGA
AATCGAAGTTGCGATTGGCATCGGTTCCATAGCAGGCACTGCTGATTGGC
TTTCTGGTCTTGCGCCACATACGGGTGGTGGTGTGAGAGTATTCATAGCC
ATCGGGATTCACCACCGGCAGGATAACCCAGTCAAAGTCCTTCAGCAGTT
CCGAGTTGGCAGCAAAGTTCTCCACCAGCTGATGGATCACATACAGAGCT
CCAGCATGGGCGATCCATTCGCGAGCATGGATACCAGCATCCAGGAAGAC
AACATTCTTGCCGGTCTTACCATCGCCATTGGTGATAGTGATGGTCTTGA
TGTCACGATTCTCATACGACTTGCCAGCCACCTGGACGGATACACGGCTG
GGATAGGCAGCAGCCAGTTCATCCAGGTAGGCATTGATCTCGGCATGACG
ATGGAACGCCTTGAAGCTAACGCTGCGTTCAGCGGATCGCAAGTTCATCA
CCCT

BO08058.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8560-PA 1257 CG8560-RA 323..1254 950..19 4635 99.8 Minus
CG8562-PA 1275 CG8562-RA 922..977 369..314 155 91 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:40:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8560-RB 1334 CG8560-RB 365..1300 954..19 4650 99.8 Minus
CG8560-RA 1566 CG8560-RA 597..1532 954..19 4650 99.8 Minus
CG8562-RA 1483 CG8562-RA 501..703 795..593 310 77.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:40:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7402728..7403368 314..954 3175 99.7 Plus
3L 28110227 3L 7402366..7402660 19..313 1475 100 Plus
3L 28110227 3L 7398870..7399072 795..593 310 76.8 Minus
3L 28110227 3L 7399311..7399366 369..314 205 91.1 Minus
Blast to na_te.dros performed on 2015-02-13 05:40:16 has no hits.

BO08058.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:41 Download gff for BO08058.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8560-PA 319..1257 18..954 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:26 Download gff for BO08058.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8560-PA 319..1257 18..954 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:06:14 Download gff for BO08058.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8560-RA 597..1537 13..954 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:56:26 Download gff for BO08058.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8560-RA 597..1537 13..954 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:56:26 Download gff for BO08058.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7402361..7402660 13..313 99 <- Plus
3L 7402728..7403368 314..954 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:06:14 Download gff for BO08058.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7395461..7395760 13..313 99 <- Plus
arm_3L 7395828..7396468 314..954 99   Plus

BO08058.5prime Sequence

937 bp (791 high quality bases) assembled on 2006-01-06

> BO08058.5prime
GAAGTTATCAGTCGACATGTTGAAACTATTTGCTGTGGTGCTCCTGCTGG
CCAGCGTGGCCTTGGCGGTGGAAAACTACGATGGCTACAAGATCTACGAC
ATCAATGCTCGCAACGCTTTTGAGAAGCAGCTGCTGCTGCGTTTGTCCGG
AAATGAGGCATACGACTTCTTTGACCTGCCCCGTTCCCTGGACGCGTCCA
GTCGCGTGATGGTCAAGCCCGAGGATCAGGAGGGATTCGAGCACCTGCTG
GAGAAGTACGGCGTAAACTACTCGGTGATCAACGAGAATTTCGGTGAGTC
GCTGCGTCAGGAGCGCGATGAGAACCAGAACCAGAGGTTGATGAACCTGC
GATCCGCTGAACGCAGCGTTAGCTTCAAGGCGTTCCATCGTCATGCCGAG
ATCAATGCCTACCTGGATGAACTGGCTGCTGCCTATCCCAGCCGTGTATC
CGTCCAGGTGGCTGGCAAGTCGTATGAGAATCGTGACATCAAGACCATCA
CTATCACCAATGGCGATGGTAAGACCGGCAAGAATGTTGTCTTCCTGGAT
GCTGGTATCCATGCTCGCGAATGGATCGCCCATGCTGGAGCTCTGTATGT
GATCCATCAGCTGGTGGAGAACTTTGCTGCCAACTCGGAACTGCTGAAGG
ACTTTGACTGGGTTATCCTGCCGGTGGTGAATCCCGATGGCTATGAATAC
TCTCACACCACCACCCGTATGTGGCGCAAGACCAGAAAGCCAATCAGCAG
TGCCTGCTATGGAACCGATGCCAATCGCAACTTCGATTTCCATTGGGGAG
AGGTTGGTGCCTCCAGCTACTCCTGCTCTGATACCTTCAAGGGTGAGACG
GCCTTCTCCGAGCCGGAGACTCAGTTGATTCGCGATATCCTGCTCAGTCT
GACGGGACGTGGCAAGTTCTACCTGACCCTCCACTCC

BO08058.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8560-PA 1257 CG8560-RA 1..921 17..937 4580 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG8560-RB 1334 CG8560-RB 47..967 17..937 4590 99.9 Plus
CG8560-RA 1566 CG8560-RA 279..1199 17..937 4590 99.9 Plus
CG8562-RA 1483 CG8562-RA 501..703 494..696 310 77.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:30:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7402766..7403619 937..84 4255 99.9 Minus
3L 28110227 3L 7403836..7403903 84..17 340 100 Minus
3L 28110227 3L 7398870..7399072 494..696 310 76.8 Plus
Blast to na_te.dros performed on 2015-02-12 00:30:06 has no hits.

BO08058.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:42 Download gff for BO08058.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8560-PA 1..921 17..937 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:27 Download gff for BO08058.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8560-PA 1..921 17..937 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:50:04 Download gff for BO08058.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8560-RA 279..1199 17..937 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:14 Download gff for BO08058.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8560-RA 279..1199 17..937 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:14 Download gff for BO08058.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7402766..7403618 85..937 99 <- Minus
3L 7403836..7403903 17..84 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:50:04 Download gff for BO08058.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7395866..7396718 85..937 99 <- Minus
arm_3L 7396936..7397003 17..84 100   Minus

BO08058.complete Sequence

1288 bp (1288 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631032

> BO08058.complete
GAAGTTATCAGTCGACATGTTGAAACTATTTGCTGTGGTGCTCCTGCTGG
CCAGCGTGGCCTTGGCGGTGGAAAACTACGATGGCTACAAGATCTACGAC
ATCAATGCTCGCAACGCTTTTGAGAAGCAGCTGCTGCTGCGTTTGTCCGG
AAATGAGGCATACGACTTCTTTGACCTGCCCCGTTCCCTGGACGCGTCCA
GTCGCGTGATGGTCAAGCCCGAGGATCAGGAGGGATTCGAGCACCTGCTG
GAGAAGTACGGCGTAAACTACTCGGTGATCAACGAGAATTTCGGTGAGTC
GCTGCGTCAGGAGCGCGATGAGAACCAGAACCAGAGGTTGATGAACCTGC
GATCCGCTGAACGCAGCGTTAGCTTCAAGGCGTTCCATCGTCATGCCGAG
ATCAATGCCTACCTGGATGAACTGGCTGCTGCCTATCCCAGCCGTGTATC
CGTCCAGGTGGCTGGCAAGTCGTATGAGAATCGTGACATCAAGACCATCA
CTATCACCAATGGCGATGGTAAGACCGGCAAGAATGTTGTCTTCCTGGAT
GCTGGTATCCATGCTCGCGAATGGATCGCCCATGCTGGAGCTCTGTATGT
GATCCATCAGCTGGTGGAGAACTTTGCTGCCAACTCGGAACTGCTGAAGG
ACTTTGACTGGGTTATCCTGCCGGTGGTGAATCCCGATGGCTATGAATAC
TCTCACACCACCACCCGTATGTGGCGCAAGACCAGAAAGCCAATCAGCAG
TGCCTGCTATGGAACCGATGCCAATCGCAACTTCGATTTCCATTGGGGAG
AGGTTGGTGCCTCCAGCTACTCCTGCTCTGATACCTTCAAGGGTGAGACG
GCCTTCTCCGAGCCGGAGACTCAGTTGATTCGCGATATCCTGCTCAGTCT
GACCGGACGTGGCAAGTTCTACCTGACCCTCCACTCCTATGGCAACTACC
TGCTGTATCCTTGGGGCTGGACGTCTGCTCTGCCCAGCAGCTGGCGCGAC
AACGATGAGGTGGCCCAGGGTGGAGCGGATGCCATCAAGAGTGCGACCGG
AACGAAGTATACCGTGGGCAGTTCCACCAACGTTCTGTACGCTGCTGCCG
GCGGCAGTGACGACTATGCCTTCGGAGTGGCCAACTTCCCGGTGTCGATT
ACCATGGAACTGCCGGCCGGCGGTACTGGCTTCAATCCCAGCACCAGCCA
GATCGAGGGCTTCGTTTCCGAGACCTGGGTGGGCATCAAGGCCATGGCCC
AGAAGGTTGCCGATAAGTACGCAAGCTTTCTAGACCAT

BO08058.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:17:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG8560-RB 1257 CG8560-PB 1..1254 17..1270 6270 100 Plus
CG8560-RA 1257 CG8560-PA 1..1254 17..1270 6270 100 Plus
CG8562-RA 1275 CG8562-PA 481..683 494..696 310 76.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG8560-RB 1334 CG8560-RB 47..1300 17..1270 6270 100 Plus
CG8560-RA 1566 CG8560-RA 279..1532 17..1270 6270 100 Plus
CG8562-RA 1483 CG8562-RA 501..703 494..696 310 76.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7402728..7403619 975..84 4460 100 Minus
3L 28110227 3L 7402366..7402660 1270..976 1475 100 Minus
3L 28110227 3L 7403836..7403903 84..17 340 100 Minus
3L 28110227 3L 7398870..7399072 494..696 310 76.8 Plus
3L 28110227 3L 7399311..7399366 920..975 205 91.1 Plus
Blast to na_te.dros performed on 2014-11-27 15:17:43 has no hits.

BO08058.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:28 Download gff for BO08058.complete
Subject Subject Range Query Range Percent Splice Strand
CG8560-RA 1..1257 17..1271 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:41 Download gff for BO08058.complete
Subject Subject Range Query Range Percent Splice Strand
CG8560-RA 279..1537 17..1276 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:39 Download gff for BO08058.complete
Subject Subject Range Query Range Percent Splice Strand
CG8560-RA 284..1532 22..1272 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:29 Download gff for BO08058.complete
Subject Subject Range Query Range Percent Splice Strand
CG8560-RA 279..1537 17..1276 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:25 Download gff for BO08058.complete
Subject Subject Range Query Range Percent Splice Strand
CG8560-RA 284..1532 22..1272 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:25 Download gff for BO08058.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7402364..7402660 976..1272 99 <- Minus
3L 7402728..7403618 85..975 100 <- Minus
3L 7403836..7403898 22..84 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:39 Download gff for BO08058.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7395464..7395760 976..1272 99 <- Minus
arm_3L 7395828..7396718 85..975 100 <- Minus
arm_3L 7396936..7396998 22..84 100   Minus

BO08058.pep Sequence

Translation from 16 to 1288

> BO08058.pep
MLKLFAVVLLLASVALAVENYDGYKIYDINARNAFEKQLLLRLSGNEAYD
FFDLPRSLDASSRVMVKPEDQEGFEHLLEKYGVNYSVINENFGESLRQER
DENQNQRLMNLRSAERSVSFKAFHRHAEINAYLDELAAAYPSRVSVQVAG
KSYENRDIKTITITNGDGKTGKNVVFLDAGIHAREWIAHAGALYVIHQLV
ENFAANSELLKDFDWVILPVVNPDGYEYSHTTTRMWRKTRKPISSACYGT
DANRNFDFHWGEVGASSYSCSDTFKGETAFSEPETQLIRDILLSLTGRGK
FYLTLHSYGNYLLYPWGWTSALPSSWRDNDEVAQGGADAIKSATGTKYTV
GSSTNVLYAAAGGSDDYAFGVANFPVSITMELPAGGTGFNPSTSQIEGFV
SETWVGIKAMAQKVADKYASFLDH

BO08058.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG8560-PB 418 CG8560-PB 1..418 1..418 2183 100 Plus
CG8560-PA 418 CG8560-PA 1..418 1..418 2183 100 Plus
CG8562-PA 424 CG8562-PA 9..424 7..418 1154 55 Plus
CG18417-PA 427 CG18417-PA 6..424 7..418 1032 49.3 Plus
CG32379-PB 344 CG32379-PB 1..344 78..420 860 48.3 Plus